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Conserved domains on  [gi|446753024|ref|WP_000830280|]
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MULTISPECIES: flagellar type III secretion system pore protein FliP [Enterobacteriaceae]

Protein Classification

flagellar type III secretion system pore protein FliP( domain architecture ID 10003557)

flagellar type III secretion system pore protein FliP plays a role in the flagellum-specific transport system

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
30-243 3.32e-110

Flagellar biosynthesis protein FliP [Cell motility];


:

Pssm-ID: 440949  Cd Length: 249  Bit Score: 317.44  E-value: 3.32e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  30 LNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109
Cdd:COG1338   32 LTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFFVMAPVFD 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKG--HAADQDLSIVVPAYVLSELKTAFQIG 187
Cdd:COG1338  112 QIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPpeTPEDVPLRVLIPAFVISELKTAFQIG 191

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446753024 188 FMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
Cdd:COG1338  192 FLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRS 247
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
30-243 3.32e-110

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 317.44  E-value: 3.32e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  30 LNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109
Cdd:COG1338   32 LTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFFVMAPVFD 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKG--HAADQDLSIVVPAYVLSELKTAFQIG 187
Cdd:COG1338  112 QIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPpeTPEDVPLRVLIPAFVISELKTAFQIG 191

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446753024 188 FMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
Cdd:COG1338  192 FLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRS 247
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 23-246 2.91e-105

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 304.81  E-value: 2.91e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  23 QGGDIALLNVVTHGN-TQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTM 101
Cdd:PRK05699  20 AAAPLPGLNLLPGANgGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPNQVLIGLALFLTF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024 102 LVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGH-AADQDLSIVVPAYVLSEL 180
Cdd:PRK05699 100 FIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGEPPKtPEDVPLSVLVPAFVLSEL 179

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446753024 181 KTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTSIRG 246
Cdd:PRK05699 180 KTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSFGG 245
FliP pfam00813
FliP family;
51-240 3.38e-95

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 276.99  E-value: 3.38e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024   51 MTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDAL 130
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  131 STAATPLKRFMLAQTDKKAMAQIMTIGGAKG-HAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209
Cdd:pfam00813  81 ERASEPLREFMLKQTREKDLALFLDLAGQWPeTAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSMG 160

                         170       180       190
                  ....*....|....*....|....*....|.
gi 446753024  210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTL 240
Cdd:pfam00813 161 MMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 50-243 1.99e-74

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 224.57  E-value: 1.99e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024   50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDA 129
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  130 LSTAATPLKRFMLAQTDKKAMAQIMTIGGAKG--HAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMA 207
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTRDKDLALFMRLAKIPKpqTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMA 160

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 446753024  208 MGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
Cdd:TIGR01103 161 MGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQS 196
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
30-243 3.32e-110

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 317.44  E-value: 3.32e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  30 LNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109
Cdd:COG1338   32 LTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFFVMAPVFD 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKG--HAADQDLSIVVPAYVLSELKTAFQIG 187
Cdd:COG1338  112 QIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPpeTPEDVPLRVLIPAFVISELKTAFQIG 191

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446753024 188 FMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
Cdd:COG1338  192 FLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRS 247
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 23-246 2.91e-105

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 304.81  E-value: 2.91e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  23 QGGDIALLNVVTHGN-TQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTM 101
Cdd:PRK05699  20 AAAPLPGLNLLPGANgGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPNQVLIGLALFLTF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024 102 LVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGH-AADQDLSIVVPAYVLSEL 180
Cdd:PRK05699 100 FIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGEPPKtPEDVPLSVLVPAFVLSEL 179

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446753024 181 KTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTSIRG 246
Cdd:PRK05699 180 KTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSFGG 245
FliP pfam00813
FliP family;
51-240 3.38e-95

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 276.99  E-value: 3.38e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024   51 MTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDAL 130
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  131 STAATPLKRFMLAQTDKKAMAQIMTIGGAKG-HAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209
Cdd:pfam00813  81 ERASEPLREFMLKQTREKDLALFLDLAGQWPeTAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSMG 160

                         170       180       190
                  ....*....|....*....|....*....|.
gi 446753024  210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTL 240
Cdd:pfam00813 161 MMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 50-243 1.99e-74

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 224.57  E-value: 1.99e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024   50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDA 129
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  130 LSTAATPLKRFMLAQTDKKAMAQIMTIGGAKG--HAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMA 207
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTRDKDLALFMRLAKIPKpqTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMA 160

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 446753024  208 MGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
Cdd:TIGR01103 161 MGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQS 196
EscR COG4790
Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and ...
 45-240 8.96e-68

Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443819  Cd Length: 216  Bit Score: 208.49  E-value: 8.96e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  45 IQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYD--HAVVPFEND 122
Cdd:COG4790    8 LSLILLLALLSLLPFLVVMGTSFLKISVVLSLLRNALGVQQVPPNMVLNGIALILTLFVMAPVGQEIYDrlQAAPVDFSS 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024 123 QITLTDALSTAATPLKRFMLAQTDKK------AMAQIMTIGGAKGHAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLV 196
Cdd:COG4790   88 SASVLEAVDAGLEPLRDFLKKNTDPEerafflDAAQRLWPEEYAAKLKPDDLLVLLPAFVLSELTSAFKIGFLLYLPFVV 167

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 446753024 197 IDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTL 240
Cdd:COG4790  168 IDLVVSNILLALGMMMVSPMTISLPFKLLLFVLVDGWTLLLHGL 211
PRK12430 PRK12430
putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
 38-243 1.87e-64

putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional


Pssm-ID: 237101 [Multi-domain]  Cd Length: 379  Bit Score: 205.50  E-value: 1.87e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  38 TQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAVV 117
Cdd:PRK12430 169 SQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFDKIYKDAYL 248

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024 118 PFENDQITLTDALSTAATPLKRFMLAQT---DKKAMAQIMTIGGAKgHAADQDLSIVVPAYVLSELKTAFQIGFMIYIPF 194
Cdd:PRK12430 249 PFSQEKINMDDAILKGAMPLKKFMLNQTrtpDLELFSKLAHISSYK-NKNEIPMRILLPSFITSELKTAFQIGFTIFIPF 327

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 446753024 195 LVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
Cdd:PRK12430 328 LIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHS 376
PRK12797 PRK12797
type III secretion system protein YscR; Provisional
 45-240 5.47e-60

type III secretion system protein YscR; Provisional


Pssm-ID: 237210  Cd Length: 213  Bit Score: 188.54  E-value: 5.47e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  45 IQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYD---HAVVPFEN 121
Cdd:PRK12797   8 LQLIILLALLSLLPLIAVMGTSFLKISVVLSLLRNALGVQQVPPNMALYGLALILTLFVMAPVGLAIQDrlqQPPLSLQD 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024 122 DQItLTDALSTAATPLKRFMLAQTDKKAMAQIMTIG------GAKGHAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFL 195
Cdd:PRK12797  88 PDS-VLQLLDAALAPLRDFLKKHTDERERTFFVRSAqriwpeEAADSLKKDDLLILIPAFTLSELTRAFEIGFLLYLPFI 166

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 446753024 196 VIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTL 240
Cdd:PRK12797 167 VIDLIISNILLAMGMMMVSPTTISLPFKLLLFVLVDGWSRLLHGL 211
yscR TIGR01102
type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic ...
 48-240 2.08e-54

type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130172  Cd Length: 202  Bit Score: 173.68  E-value: 2.08e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024   48 LILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFE--NDQIT 125
Cdd:TIGR01102   2 IAVLAALSLLPFIIVVGTSFLKISVVLGILRNALGVQQVPPNMALYGIALILSMFVMAPVGHQAQDRFHQEPVaySNIDF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  126 LTDALSTAATPLKRFMLAQTDKKAM------AQIMTIGGAKGHAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDL 199
Cdd:TIGR01102  82 LQKSLDAGLAPYREFLKKNTDEDEVaffersTQKMWPKEMADRLKKDSLLILLPAFTLSELTAAFKIGFLLYLPFIVIDL 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 446753024  200 IVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTL 240
Cdd:TIGR01102 162 IVSNILLALGMMMVSPMTISLPFKLLLFVLIDGWSRLLHGL 202
PRK09617 PRK09617
type III secretion system protein; Reviewed
 49-245 8.73e-50

type III secretion system protein; Reviewed


Pssm-ID: 236593  Cd Length: 243  Bit Score: 163.38  E-value: 8.73e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  49 ILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDQI---- 124
Cdd:PRK09617  30 VILIFLALSPFLVMLLTSFLKIIIVLSLLRNALGVQQTPPSQVLNGIALILSIYIMFPTGVAMYNDAQKGIESNAVprsl 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024 125 -------TLTDALSTAATPLKRFMLAQTDKKA------MAQIMTIGGAKGHAADQDLSIVVPAYVLSELKTAFQIGFMIY 191
Cdd:PRK09617 110 fsaegaeTVFVAANKSKEPLRSFLIKNTPKPQiasfykISQKTFPPEIRDALTPSDFMIIIPAFIMGQLKNAFEIGVLIY 189

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446753024 192 IPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTSIR 245
Cdd:PRK09617 190 LPFFVIDLVTANVLLAMGMMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISFK 243
fliP PRK12783
flagellar biosynthesis protein FliP; Reviewed
 45-243 9.08e-49

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 171720  Cd Length: 255  Bit Score: 161.19  E-value: 9.08e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  45 IQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDQI 124
Cdd:PRK12783  51 IQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRI 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024 125 TLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGHAADQ----DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLI 200
Cdd:PRK12783 131 SEEEAFGKIVDPFREFMTQHVRPKDLQTFTDLASRSFPKAEAgekiDLRILIPAFMISELRRGFEIGFLIVLPFLVIDMI 210

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 446753024 201 VASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243
Cdd:PRK12783 211 VATIVMSMGMMMLPPTVISLPFKVLFFVLIDGWNLLVSGLVRS 253
spaP PRK12796
EscR/YscR/HrcR family type III secretion system export apparatus protein;
45-235 1.02e-44

EscR/YscR/HrcR family type III secretion system export apparatus protein;


Pssm-ID: 237209  Cd Length: 221  Bit Score: 149.75  E-value: 1.02e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024  45 IQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHavvpFENDQI 124
Cdd:PRK12796   5 ISLIALLSFFTLLPFIIASGTCFIKFSIVFVMVRNALGLQQVPSNMTLNGIALLLSMFVMMPVIQDIYVY----FQNEPV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446753024 125 TLTDA------LSTAATPLKRFMLAQTDKKAM-----AQIMTIGGAKGHAADQDLSI-----VVPAYVLSELKTAFQIGF 188
Cdd:PRK12796  81 DFNNIasvvkfVDEGLGGYRDYLIKYSDPELVrfferAQKKRSYGDEAEANDHDKDEislfsLLPAYALSEIKSAFKIGF 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 446753024 189 MIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSL 235
Cdd:PRK12796 161 YLYLPFVVVDLVVSSVLLALGMMMMSPVTISVPIKLILFVAMDGWTL 207
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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