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Conserved domains on  [gi|446756137|ref|WP_000833393|]
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MULTISPECIES: DUF1249 family protein [Enterobacteriaceae]

Protein Classification

DUF1249 domain-containing protein( domain architecture ID 10013716)

DUF1249 domain-containing protein similar to Escherichia coli YqiB

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK11039 PRK11039
DUF1249 family protein;
1-140 3.71e-111

DUF1249 family protein;


:

Pssm-ID: 182921  Cd Length: 140  Bit Score: 310.86  E-value: 3.71e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446756137   1 MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQYRLTIVESTRYTTLVTIEQTAPAISYWSLPSMTVRL 80
Cdd:PRK11039   1 MKRYTPDFPEMMRLCETNFAQLRRLLPRNDEVGETVSYQVANAQYRLTIVESTRYTTLVEIEQTAPAISYWSLPSMTVRL 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446756137  81 YHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVY 140
Cdd:PRK11039  81 YHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVC 140
 
Name Accession Description Interval E-value
PRK11039 PRK11039
DUF1249 family protein;
1-140 3.71e-111

DUF1249 family protein;


Pssm-ID: 182921  Cd Length: 140  Bit Score: 310.86  E-value: 3.71e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446756137   1 MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQYRLTIVESTRYTTLVTIEQTAPAISYWSLPSMTVRL 80
Cdd:PRK11039   1 MKRYTPDFPEMMRLCETNFAQLRRLLPRNDEVGETVSYQVANAQYRLTIVESTRYTTLVEIEQTAPAISYWSLPSMTVRL 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446756137  81 YHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVY 140
Cdd:PRK11039  81 YHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVC 140
yqiB COG3151
Uncharacterized conserved protein YqiB, DUF1249 family [Function unknown];
1-139 1.14e-64

Uncharacterized conserved protein YqiB, DUF1249 family [Function unknown];


Pssm-ID: 442385  Cd Length: 145  Bit Score: 193.61  E-value: 1.14e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446756137   1 MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQ-YRLTIVESTRYTTLVTIEQTAPAISYWSLPSMTVR 79
Cdd:COG3151    6 RPRYVPDLAALMALCEANYARLLRLLPDLDEVGDSYVSSVGGGLdLHLEVLERSPYTTTLELTQLFPDLPGLPDPDLTVR 85
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446756137  80 LYHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPV 139
Cdd:COG3151   86 LYHDARLAEVLSCQQIRRLQPRYGYPNPKMHQLDEKWQLNRFLGEWLDYCLRQGHSFTSL 145
DUF1249 pfam06853
Protein of unknown function (DUF1249); This family consists of several hypothetical bacterial ...
21-133 4.18e-50

Protein of unknown function (DUF1249); This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.


Pssm-ID: 429154  Cd Length: 116  Bit Score: 155.44  E-value: 4.18e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446756137   21 QLRRLLPRNDAPGETVSYQVAN-AQYRLTIVESTRYTTLVTIEQTAPAISYWSLPSMTVRLYHDAMVAEVCSSQQIFRFK 99
Cdd:pfam06853   1 RLLRLLPDLRDLGGSRVSSVSNlLDLHLEVLERAPYTTTLRLTQLFGQLPWLPDPKLTVRLYHDARMAEVLSAQQHRRLR 80
                          90       100       110
                  ....*....|....*....|....*....|....
gi 446756137  100 ARYDYPNKKLHQRDEKHQINQFLADWLRYCLAHG 133
Cdd:pfam06853  81 PRYDYPNPKMHQLDEKWQLNRFLAEWLDYCLAQG 114
 
Name Accession Description Interval E-value
PRK11039 PRK11039
DUF1249 family protein;
1-140 3.71e-111

DUF1249 family protein;


Pssm-ID: 182921  Cd Length: 140  Bit Score: 310.86  E-value: 3.71e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446756137   1 MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQYRLTIVESTRYTTLVTIEQTAPAISYWSLPSMTVRL 80
Cdd:PRK11039   1 MKRYTPDFPEMMRLCETNFAQLRRLLPRNDEVGETVSYQVANAQYRLTIVESTRYTTLVEIEQTAPAISYWSLPSMTVRL 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446756137  81 YHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVY 140
Cdd:PRK11039  81 YHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVC 140
yqiB COG3151
Uncharacterized conserved protein YqiB, DUF1249 family [Function unknown];
1-139 1.14e-64

Uncharacterized conserved protein YqiB, DUF1249 family [Function unknown];


Pssm-ID: 442385  Cd Length: 145  Bit Score: 193.61  E-value: 1.14e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446756137   1 MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQ-YRLTIVESTRYTTLVTIEQTAPAISYWSLPSMTVR 79
Cdd:COG3151    6 RPRYVPDLAALMALCEANYARLLRLLPDLDEVGDSYVSSVGGGLdLHLEVLERSPYTTTLELTQLFPDLPGLPDPDLTVR 85
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446756137  80 LYHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPV 139
Cdd:COG3151   86 LYHDARLAEVLSCQQIRRLQPRYGYPNPKMHQLDEKWQLNRFLGEWLDYCLRQGHSFTSL 145
DUF1249 pfam06853
Protein of unknown function (DUF1249); This family consists of several hypothetical bacterial ...
21-133 4.18e-50

Protein of unknown function (DUF1249); This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.


Pssm-ID: 429154  Cd Length: 116  Bit Score: 155.44  E-value: 4.18e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446756137   21 QLRRLLPRNDAPGETVSYQVAN-AQYRLTIVESTRYTTLVTIEQTAPAISYWSLPSMTVRLYHDAMVAEVCSSQQIFRFK 99
Cdd:pfam06853   1 RLLRLLPDLRDLGGSRVSSVSNlLDLHLEVLERAPYTTTLRLTQLFGQLPWLPDPKLTVRLYHDARMAEVLSAQQHRRLR 80
                          90       100       110
                  ....*....|....*....|....*....|....
gi 446756137  100 ARYDYPNKKLHQRDEKHQINQFLADWLRYCLAHG 133
Cdd:pfam06853  81 PRYDYPNPKMHQLDEKWQLNRFLAEWLDYCLAQG 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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