|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-BC-glcB |
TIGR02002 |
PTS system, glucose-specific IIBC component; This model represents the combined B and C ... |
2-507 |
2.80e-168 |
|
PTS system, glucose-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273923 [Multi-domain] Cd Length: 502 Bit Score: 485.06 E-value: 2.80e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 2 KSLFEKAQQFGKSFMLPIAILPAAGLLLGIGGALSNPNTVKAYPILDITLLQNIFTLMSAAGSIVFQNLPVIFAIGVAIG 81
Cdd:TIGR02002 2 KKAFGQLQKIGKALMLPVAVLPVAGILLGFGNANQNNQVFSFLPFLHMEWIQLVSKVMEAAGGIIFANLPLIFAIGVALG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 82 LSRSDkGTAGLAALLGFLIMNATMNGLLTITGTLAKDQLAqnGQGMVLGIQTVETGVFGGIITGIMTAILHNKYHKVVLP 161
Cdd:TIGR02002 82 LAGND-GVAGLAALVGYLIMNKTMGVVAGLTLLLIASEIA--SFASVLGIPTLQTGVFGGIIIGAIAAYCYNRFYNIKLP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 162 PYLGFFGGSRFVPIVTAFAAIFLGVLMFFIWPSIQAGIYHVGGFVTKTG-AIGTFVYGFILRLLGPLGLHHIFYLPFWqT 240
Cdd:TIGR02002 159 EYLGFFAGKRFVPIITGLAAIVTGIVLSFIWPPVQDALNTFSHWAAYQNpVVAFFIFGFIERSLIPFGLHHIFNAPFW-F 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 241 ALGGTLEVKGHLVQGTQNIFFAQLGDPdvTKYYSGvsRFMSGRFITMMFGLCGAALAIYHTAKPEHKKVVGGLMLSAALT 320
Cdd:TIGR02002 238 EFGSYTNEAGNLFRGDQPIFMAQLKDG--VAFTAG--GFLSGGFPFMMFGLPAAALAIYHSAKPENKKLVGGLMISAALT 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 321 SFLTGITEPLEFSFLFVAPILYVIHAFFDGLAFMMADIFNITIGQTFSGGFIDFLLFGVLQGnsKTNYLYVIPIGIVWFC 400
Cdd:TIGR02002 314 SFLTGITEPLEFSFLFVAPILYVIHAILAGLSFPIMILLGVKIGTTFSGGAIDFILYGLLSN--RSKAWLFIIVGIGYAI 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 401 LYYIVFRFLITKFNFKTPGREDKAAAQQV--EATERAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLESTGA 478
Cdd:TIGR02002 392 IYYFLFRFLIKKLNLKTPGREDATAEAKAtgEPSELAFDVVAALGGKENITSLDACITRLRVSVADISKVDVAKLKKLGA 471
|
490 500
....*....|....*....|....*....
gi 446760948 479 KGVIQQGTGVQVIYGPHVTVIKNEIEELL 507
Cdd:TIGR02002 472 AGVLVVGNNVQAIFGPKSDTIKSEMHDII 500
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
3-508 |
4.50e-142 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 419.14 E-value: 4.50e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 3 SLFEKAQQFGKSFMLPIAILPAAGLLLGIGGALSNPNTVKAYPILDITLLQNIFTLMSAAGSIVFQNLPVIFAIGVAIGL 82
Cdd:PRK10110 10 TLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPFLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 83 SRSDKGTAGLAALLGFLIMNATMNGLLTITGTLAKD---QLAQNGQGMVLGIQTVETGVFGGIITGIMTAILHNKYHKVV 159
Cdd:PRK10110 90 ARENKGVAAFAGFVGYAVMNLAVNFWLTNKGILPTTdaaVLKANNIQSILGIQSIDTGILGAVIAGIIVWMLHERFHNIR 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 160 LPPYLGFFGGSRFVPIVTAFAAIFLGVLMFFIWPSIQAGIYHVGGFVTKTGAIGTFVYGFILRLLGPLGLHHIFYLPFWQ 239
Cdd:PRK10110 170 LPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHILVALIRF 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 240 TALGGTLEVKGHLVQGTQNIFFAQLGDPDVTKYYSGVSRFMS-GRFITMMFGLCGAALAIYHTAKPEHKKVVGGLMLSAA 318
Cdd:PRK10110 250 TDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATRFLSqGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISGV 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 319 LTSFLTGITEPLEFSFLFVAPILYVIHAFFDGLAFMMADIFNITIGQTfSGGFIDFLLFGVLQGNSkTNYLYVIPIGIVW 398
Cdd:PRK10110 330 IACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNT-DGNIIDFVVFGILHGLS-TKWYMVPVVAAIW 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 399 FCLYYIVFRFLITKFNFKTPGREDKAAA---QQVEATE-----RAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDK 470
Cdd:PRK10110 408 FVVYYVIFRFAITRFNLKTPGRDSEVASsieKAVAGAPgksgyNVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVDV 487
|
490 500 510
....*....|....*....|....*....|....*....
gi 446760948 471 VLLESTGAKGVIQ-QGTGVQVIYGPHVTVIKNEIEELLG 508
Cdd:PRK10110 488 QALKDNRAIGVVQlNQHNLQVVIGPQVQSVKDEMAGLMH 526
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
1-507 |
5.53e-92 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 287.99 E-value: 5.53e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 1 MKSLFEKAQQFGKSFMLPIAILPAAGLLLGIGGALSNPNTVKaypilDITLLQNIFTLMSAAGSIVFQNLPVIFAIGVAI 80
Cdd:COG1263 5 KNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLG-----EGSFLSGTYQILNAAGDAVFYFLPLLFAIGAAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 81 GLsrsdKGTAGLAALLGFLIMNATMNGLLTITGtlakdqlaqnGQGMVLGIQTV---ETGVFGGIITGIMTAILhNKYHK 157
Cdd:COG1263 80 GF----GGNPALAAVIGYLLVHPTLLNAYAVAG----------GYISFLGIPTLigyQGGVFPGILAGWLAAYL-EKFLK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 158 VVLPPYLGFFggsrFVPIVTAFAAIFLGV-LMFFIWPSIQAGIYH-VGGFVTKTGAIGTFVYGFILRLLGPLGLHHIFYL 235
Cdd:COG1263 145 KKLPDALGFF----FVPILTLLIMVPLALlVIGPIWPPIGNGIAAgLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNP 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 236 PFWQtALGGTlevkghlvqGTQNIFFAQLGdpdvtkyysgvsrfmsgrfitMMFGLCGAALAIYHTAKPehKKVVGGLML 315
Cdd:COG1263 221 IFWF-LLGGT---------GDDGLFPILAA---------------------AMFGQPGAALAVYLKAKP--NKKVKGLAI 267
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 316 SAALTSFLTGITEPLEFSFLFVAPILYVIHAFFDGLAFMMADIFNITIgQTFS-GGFIDFLLFgvlqGNSKTNYLYVIPI 394
Cdd:COG1263 268 SAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKA-FSFGvGGLIDFPSI----LNPGATNLLLYLI 342
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 395 GIVWFCLYYIVFRFLITKFNFKTPGREDKAAAQQVEATERAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLE 474
Cdd:COG1263 343 GLVIAFVYYFVFTFLIGREDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKDVVKLA 422
|
490 500 510
....*....|....*....|....*....|...
gi 446760948 475 STGAKGVIQQGTGVQVIYGPHVTVIKNEIEELL 507
Cdd:COG1263 423 AAGAVVVGVGGVGAVGGVGGGGVVIVIVIIILV 455
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
12-350 |
9.43e-61 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 202.19 E-value: 9.43e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 12 GKSFMLPIAILPAAGLLLGIGgalSNPNTVKAYPILDITLLQNIFTLMSAAGSIVFQNLPVIFAIGVAIGLSrSDKGTAG 91
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLG---NLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLA-GGDGVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 92 LAALLGFLIMN--ATMNGLLTITGTlakdqlaqNGQGMVLGIQTVETGVFGGIITGIMTAILHNKYHKVV---LPPYLGF 166
Cdd:pfam02378 77 AAGLIGLLSFNlaAAISVALTAAGL--------SGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNItikLPDSLPF 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 167 FGGSRFVPIVTAF-AAIFLGVLMFFIWPSIQAGIYHVGGFVT-KTGAIGTFVYGFILRLLGPLGLHHIFYLPFWQTALGG 244
Cdd:pfam02378 149 FVGKRFVPIITGFvTLLVIGPVLGLIWPAIQGGLNALGLLLIiAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIGG 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 245 TLEVKGHLVqgtqniffaqlgdpdvtkYYSGVSRFMSGRFiTMMFGLCGAALAIYHTAKPEHKKVVGGLMLSAALTSFLT 324
Cdd:pfam02378 229 SNPIANQQA------------------YGAGAAHILTGGF-DVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLF 289
|
330 340
....*....|....*....|....*.
gi 446760948 325 GITEPLEFSFLFVAPILYVIHAFFDG 350
Cdd:pfam02378 290 GITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
432-507 |
2.57e-25 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 99.14 E-value: 2.57e-25
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446760948 432 TERAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLEST-GAKGVIQQGTGVQVIYGPHV-TVIKNEIEELL 507
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLgGVKGVVKNGGQYQVIIGPGVaDVYKEAIKLLG 78
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-BC-glcB |
TIGR02002 |
PTS system, glucose-specific IIBC component; This model represents the combined B and C ... |
2-507 |
2.80e-168 |
|
PTS system, glucose-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273923 [Multi-domain] Cd Length: 502 Bit Score: 485.06 E-value: 2.80e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 2 KSLFEKAQQFGKSFMLPIAILPAAGLLLGIGGALSNPNTVKAYPILDITLLQNIFTLMSAAGSIVFQNLPVIFAIGVAIG 81
Cdd:TIGR02002 2 KKAFGQLQKIGKALMLPVAVLPVAGILLGFGNANQNNQVFSFLPFLHMEWIQLVSKVMEAAGGIIFANLPLIFAIGVALG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 82 LSRSDkGTAGLAALLGFLIMNATMNGLLTITGTLAKDQLAqnGQGMVLGIQTVETGVFGGIITGIMTAILHNKYHKVVLP 161
Cdd:TIGR02002 82 LAGND-GVAGLAALVGYLIMNKTMGVVAGLTLLLIASEIA--SFASVLGIPTLQTGVFGGIIIGAIAAYCYNRFYNIKLP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 162 PYLGFFGGSRFVPIVTAFAAIFLGVLMFFIWPSIQAGIYHVGGFVTKTG-AIGTFVYGFILRLLGPLGLHHIFYLPFWqT 240
Cdd:TIGR02002 159 EYLGFFAGKRFVPIITGLAAIVTGIVLSFIWPPVQDALNTFSHWAAYQNpVVAFFIFGFIERSLIPFGLHHIFNAPFW-F 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 241 ALGGTLEVKGHLVQGTQNIFFAQLGDPdvTKYYSGvsRFMSGRFITMMFGLCGAALAIYHTAKPEHKKVVGGLMLSAALT 320
Cdd:TIGR02002 238 EFGSYTNEAGNLFRGDQPIFMAQLKDG--VAFTAG--GFLSGGFPFMMFGLPAAALAIYHSAKPENKKLVGGLMISAALT 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 321 SFLTGITEPLEFSFLFVAPILYVIHAFFDGLAFMMADIFNITIGQTFSGGFIDFLLFGVLQGnsKTNYLYVIPIGIVWFC 400
Cdd:TIGR02002 314 SFLTGITEPLEFSFLFVAPILYVIHAILAGLSFPIMILLGVKIGTTFSGGAIDFILYGLLSN--RSKAWLFIIVGIGYAI 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 401 LYYIVFRFLITKFNFKTPGREDKAAAQQV--EATERAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLESTGA 478
Cdd:TIGR02002 392 IYYFLFRFLIKKLNLKTPGREDATAEAKAtgEPSELAFDVVAALGGKENITSLDACITRLRVSVADISKVDVAKLKKLGA 471
|
490 500
....*....|....*....|....*....
gi 446760948 479 KGVIQQGTGVQVIYGPHVTVIKNEIEELL 507
Cdd:TIGR02002 472 AGVLVVGNNVQAIFGPKSDTIKSEMHDII 500
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
3-508 |
4.50e-142 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 419.14 E-value: 4.50e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 3 SLFEKAQQFGKSFMLPIAILPAAGLLLGIGGALSNPNTVKAYPILDITLLQNIFTLMSAAGSIVFQNLPVIFAIGVAIGL 82
Cdd:PRK10110 10 TLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPFLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 83 SRSDKGTAGLAALLGFLIMNATMNGLLTITGTLAKD---QLAQNGQGMVLGIQTVETGVFGGIITGIMTAILHNKYHKVV 159
Cdd:PRK10110 90 ARENKGVAAFAGFVGYAVMNLAVNFWLTNKGILPTTdaaVLKANNIQSILGIQSIDTGILGAVIAGIIVWMLHERFHNIR 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 160 LPPYLGFFGGSRFVPIVTAFAAIFLGVLMFFIWPSIQAGIYHVGGFVTKTGAIGTFVYGFILRLLGPLGLHHIFYLPFWQ 239
Cdd:PRK10110 170 LPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHILVALIRF 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 240 TALGGTLEVKGHLVQGTQNIFFAQLGDPDVTKYYSGVSRFMS-GRFITMMFGLCGAALAIYHTAKPEHKKVVGGLMLSAA 318
Cdd:PRK10110 250 TDAGGTQEVCGQTVSGALTIFQAQLSCPTTHGFSESATRFLSqGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISGV 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 319 LTSFLTGITEPLEFSFLFVAPILYVIHAFFDGLAFMMADIFNITIGQTfSGGFIDFLLFGVLQGNSkTNYLYVIPIGIVW 398
Cdd:PRK10110 330 IACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNT-DGNIIDFVVFGILHGLS-TKWYMVPVVAAIW 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 399 FCLYYIVFRFLITKFNFKTPGREDKAAA---QQVEATE-----RAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDK 470
Cdd:PRK10110 408 FVVYYVIFRFAITRFNLKTPGRDSEVASsieKAVAGAPgksgyNVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVDV 487
|
490 500 510
....*....|....*....|....*....|....*....
gi 446760948 471 VLLESTGAKGVIQ-QGTGVQVIYGPHVTVIKNEIEELLG 508
Cdd:PRK10110 488 QALKDNRAIGVVQlNQHNLQVVIGPQVQSVKDEMAGLMH 526
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
1-505 |
5.29e-136 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 401.79 E-value: 5.29e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 1 MKSLFEKAQQFGKSFMLPIAILPAAGLLLGIGGAlsnpntvkaypilDITLLQNIFT-LMSAAGSIVFQNLPVIFAIGVA 79
Cdd:PRK11089 2 FKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSA-------------NFSWLPAVVShVMAEAGGSVFANMPLIFAIGVA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 80 IGLSRSDkGTAGLAALLGFLIMNATMNGLLTITGTLAKDQLAqngqgmvlGIQTVETGVFGGIITGIMTAILHNKYHKVV 159
Cdd:PRK11089 69 LGFTNND-GVSALAAVVAYGIMVKTMAVVAPLVLHLPAEEIA--------AKHLADTGVLGGIIAGAIAAYMFNRFYRIK 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 160 LPPYLGFFGGSRFVPIVTAFAAIFLGVLMFFIWPSIQAGIYHVGGFVTKTGAIGTF-VYGFILRLLGPLGLHHIFYLPFw 238
Cdd:PRK11089 140 LPEYLGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFgIYGFVERSLVPFGLHHIWNVPF- 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 239 QTALGGTLEVKGHLVQGTQNIFFAqlGDPDVTKyysgvsrfMSGRFITMMFGLCGAALAIYHTAKPEHKKVVGGLMLSAA 318
Cdd:PRK11089 219 QMQIGEYTNAAGQVFHGDIPRYMA--GDPTAGK--------LSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISAA 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 319 LTSFLTGITEPLEFSFLFVAPILYVIHAFFDGLAFMMADIFNITIGQTFSGGFIDFLlfgVLQGNSKTNYLYVIpIGIVW 398
Cdd:PRK11089 289 LTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDGTSFSHGLIDFI---VLSGNSSKLWLFPI-VGIGY 364
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 399 FCLYYIVFRFLITKFNFKTPGREDKAAAQQVEA-TERAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLESTG 477
Cdd:PRK11089 365 AIVYYTIFRVLIKALDLKTPGREDETEDAKATGtSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLG 444
|
490 500
....*....|....*....|....*...
gi 446760948 478 AKGVIQQGTGVQVIYGPHVTVIKNEIEE 505
Cdd:PRK11089 445 AAGVVVAGSGVQAIFGTKSDNLKTEMDE 472
|
|
| PTS-IIBC-malX |
TIGR02004 |
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS ... |
3-507 |
3.45e-129 |
|
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273924 [Multi-domain] Cd Length: 517 Bit Score: 385.73 E-value: 3.45e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 3 SLFEKAQQFGKSFMLPIAILPAAGLLLGIGGALSNPNTVKAYPILDITLLQNIFTLMSAAGSIVFQNLPVIFAIGVAIGL 82
Cdd:TIGR02004 3 TFWEFFQGLGKTFMLPVALLAFMGILLGLGSSFSSEAMIETIPFLGKPAFKIIFQWMSTIGLVAFAYLPVMFAMAIPLGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 83 SRSDKGTAGLAALLGFLIMNATMNGLLTITGTLAKD-QLAQNGQGMVLGIQTVETGVFGGIITGIMTAILHNKYHKVVLP 161
Cdd:TIGR02004 83 AREEKGVAAFSGFVGYTAMNLAINFYLTQTGVLVDPeQLREAGQGMVFGIQSIDTGVLGAVIVGLIVYKLHNRFYTVQMP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 162 PYLGFFGGSRFVPIVTAFAAIFLGVLMFFIWPSIQAGIYHVGGFVTKTGAIGTFVYGFILRLLGPLGLHHIFYLPFWQTA 241
Cdd:TIGR02004 163 DALAFFGGARFVPIISALVLAVVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPIGLHHILVAMIRFTE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 242 LGGTLEVKGHLVQGTQNIFFAQLGDPDVTKYYSGVSRFMS-GRFITMMFGLCGAALAIYHTAKPEHKKVVGGLMLSAALT 320
Cdd:TIGR02004 243 AGGSAVVCGKEVSGALNIFYAELQCNLPISAVPSATAFLSqGKMPTFLGGLPGAALAMYHCARPANRHKIKALLLSGVVA 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 321 SFLTGITEPLEFSFLFVAPILYVIHAFFDGLAFMMADIFNITIGQTfSGGFIDFLLFGVLQGnSKTNYLYVIPIGIVWFC 400
Cdd:TIGR02004 323 CAVGGITEPLEFLFLFVAPLLYLVHAILTGLGFMVMALLGVVIGNT-DGNLIDFLVFGVLQG-TYTKWYLVPIVAAIWFV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 401 LYYIVFRFLITKFNFKTPGREDKAAAQQVEATER---------AQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKV 471
Cdd:TIGR02004 401 VYYFVFKTAITTFDLKTPGREKVLDAEEYTEQEVaykktggydAAAILAALGGQENIQSLDNCITRLRLVVADANKVDDA 480
|
490 500 510
....*....|....*....|....*....|....*..
gi 446760948 472 LLESTGAKGVIQ-QGTGVQVIYGPHVTVIKNEIEELL 507
Cdd:TIGR02004 481 KLKQLGALGVVKlDAHNVQVVIGTQVTTVKNQLEMIL 517
|
|
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
8-504 |
3.07e-126 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 376.80 E-value: 3.07e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 8 AQQFGKSFMLPIAILPAAGLLLGIGGALSNPNTVKAypilditllqnifTLMSAAGSIVFQNLPVIFAIGVAIGLSRSDK 87
Cdd:TIGR01998 5 FQKLGRALMLPIATLPVAALLLRIGNATHGADLLVA-------------NFFIAAGGAIFDNLGLLFAIGVAIGMSKDND 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 88 GTAGLAALLGFLImnatmnglLTITGTLAKDQLAQNGQGMVLGIQTVETGVFGGIITGIMTAILHNKYHKVVLPPYLGFF 167
Cdd:TIGR01998 72 GAAALAGLVAYFV--------VTKVLSPPPLAAALGIKSEINMAFSAWKNVFVGILAGLIAGALYNRFSEIKLPEALSFF 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 168 GGSRFVPIVTAFAAIFLGVLMFFIWPSIQAGIYHVGGFVTKTGAIGTFVYGFILRLLGPLGLHHIFYLPFWQTALGgtle 247
Cdd:TIGR01998 144 SGKRLVPIMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNSVFWFDVAG---- 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 248 vkghlvqgtQNIFFAQLGDPDVTKYYSGVSRFMSGRFITMMFGLCGAALAIYHTAKPEHKKVVGGLMLSAALTSFLTGIT 327
Cdd:TIGR01998 220 ---------INDFGNFTGGGDLNRFKGIAGMFMAGFFPIMMFGLPAAALAMYHTARPERRKQVGGMLLSVAFASFLTGVT 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 328 EPLEFSFLFVAPILYVIHAFFDGLAFMMADIFNITIGQTFSGGFIDFLLfgVLQGNSKTNYLYVIPIGIVWFCLYYIVFR 407
Cdd:TIGR01998 291 EPLEFSFMFLAPVLYALHALLTGLSLFIAAMLHWTAGFSFSAGLIDYVL--SFNNPTANQPLMLLVQGLVFFALYYVVFR 368
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 408 FLITKFNFKTPGREDKAAAQQVEAT---------ERAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLESTGA 478
Cdd:TIGR01998 369 FAIRRFNLKTPGREDEDPEGATAAAvtstgdskmQLAKQYLAALGGHDNLVSIDACITRLRLTLKDTSIVDEPALKALGA 448
|
490 500
....*....|....*....|....*..
gi 446760948 479 KGVIQQGT-GVQVIYGPHVTVIKNEIE 504
Cdd:TIGR01998 449 RGVVKLGKhNLQVILGPLAEIVAGEMK 475
|
|
| PTS-IIBC-alpha |
TIGR02005 |
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused ... |
6-507 |
9.10e-94 |
|
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273925 [Multi-domain] Cd Length: 524 Bit Score: 294.80 E-value: 9.10e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 6 EKAQQFGKSFMLPIAILPAAGLLLGIGGALSNPNTVKAYPILDiTLLQNIFTLMSAAGSIVFQNLPVIFAIGVAIGLSRS 85
Cdd:TIGR02005 2 NAIQRFGGAMFVPVLLFAFAGIVVGFAILFKNPDIMGSLADQN-TFWYKFWSVIEEGGWTVFRQMPLIFVVGLPIGLAKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 86 DKGTAGLAALLGFLIMNATMNGLLTITGTLAKDQLAQN------GQGMVLGIQTVETGVFGGIITGIMTAILHNKYHKVV 159
Cdd:TIGR02005 81 AQGRACLAALMGYLTFNYFINAILTQWGSSFGVNFTQGvgvgvsGLTSIAGIKTLDTSIIGAIIISGIITYIHNRFFDKR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 160 LPPYLGFFGGSRFVPIVTAFAAIFLGVLMFFIWPSIQAGIYHVGGFVTKTGAIGTFVYGFILRLLGPLGLHHIFYLPFwq 239
Cdd:TIGR02005 161 LPVFLGIFQGTTFVVTIAFFVMLPCAAITCLVWPKVQMGIGSLQAFLISSGYIGVWLYTFLERILIPTGLHHFIYGPF-- 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 240 talggtlEVKGHLVQGTQNIFFAQLGDPDVTKYYSGVSRFMSGRFI----TMMFGLCGAALAIYHTAKPEHKKVVGGLML 315
Cdd:TIGR02005 239 -------IFGPAVVNHGIQAYWAQHLNEFAKSTKPLKELFPYGGFAlhgnSKVFGCLGIALAMYATAPPENRKKVAGLLI 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 316 SAALTSFLTGITEPLEFSFLFVAPILYVIHAFFdgLAFMMADIFNITIGQTFSGGFIDFLLFGVLQ--GNSKTNYLYVIP 393
Cdd:TIGR02005 312 PATLTAVVVGITEPLEFTFLFIAPYLFVVHAVL--AASMATVMYAFGVVGNMGGGLIDFIATNWLPlfKNHWGTYVTQII 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 394 IGIVWFCLYYIVFRFLITKFNFKTPGRED---------KA--AAQQVEATE---------RAQTIVAGLGGKDNIEIVDC 453
Cdd:TIGR02005 390 IGLCFTAIYFLVFRFLILKFNIPTPGREDteeevklysKAdyKAKKGDSVEskrassgndKAAYFLQALGGKENIKDVTN 469
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 446760948 454 CATRLRVTLHQNDKV-DKVLLESTGAKGVIQQGTGVQVIYGPHVTVIKNEIEELL 507
Cdd:TIGR02005 470 CATRLRISVKDESKVlDDEVFKKAGAHGVVRSGKAIQVIVGLSVPQVREAFEQLV 524
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
9-507 |
2.78e-92 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 294.47 E-value: 2.78e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 9 QQFGKSFMLPIAILPAAGLLLGIggalSNPNtvkaypilditlLQNIFTLMSAAGSIvFQNLPVIFAIGVAIGLSRSDKG 88
Cdd:PRK10255 8 QRLGRALQLPIAVLPVAALLLRF----GQPD------------LLNVAFIAQAGGAI-FDNLALIFAIGVASSWSKDSAG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 89 TAGLAALLGFLIMNATMnglLTITgtlakdqlaqngqgmvlgiQTVETGVFGGIITGIMTAILHNKYHKVVLPPYLGFFG 168
Cdd:PRK10255 71 AAALAGAVGYFVLTKAM---VTIN-------------------PEINMGVLAGIITGLVGGAAYNRWSDIKLPDFLSFFG 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 169 GSRFVPIVTAFAAIFLGVLMFFIWPSIQAGIYHVGGFVTKTGAIGTFVYGFILRLLGPLGLHHIFYLPFWqTALGGTLEV 248
Cdd:PRK10255 129 GKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAW-FQIGEFTNA 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 249 KGHLVQGTQNIFFAQLGDPDVtkyysgvsrFMSGRFITMMFGLCGAALAIYHTAKPEHKKVVGGLMLSAALTSFLTGITE 328
Cdd:PRK10255 208 AGTVFHGDINRFYAGDGTAGM---------FMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTE 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 329 PLEFSFLFVAPILYVIHAFFDGLAFMMADIFNITIGQTFSGGFIDFLLFGVLQGNSKTNYLYVIpIGIVWFCLYYIVFRF 408
Cdd:PRK10255 279 PLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLPAASQNVWMLLV-MGVVFFAIYFVLFSA 357
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 409 LITKFNFKTPGREDKAAAQQVEA---------TERAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLESTGAK 479
Cdd:PRK10255 358 VIRMFNLKTPGREDKEDEIVTEEansnteeglTQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMCKRLGAS 437
|
490 500
....*....|....*....|....*....
gi 446760948 480 GVIQ-QGTGVQVIYGPHVTVIKNEIEELL 507
Cdd:PRK10255 438 GVVKlNKQTIQVIVGAKAESIGDAMKKVV 466
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
1-507 |
5.53e-92 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 287.99 E-value: 5.53e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 1 MKSLFEKAQQFGKSFMLPIAILPAAGLLLGIGGALSNPNTVKaypilDITLLQNIFTLMSAAGSIVFQNLPVIFAIGVAI 80
Cdd:COG1263 5 KNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLG-----EGSFLSGTYQILNAAGDAVFYFLPLLFAIGAAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 81 GLsrsdKGTAGLAALLGFLIMNATMNGLLTITGtlakdqlaqnGQGMVLGIQTV---ETGVFGGIITGIMTAILhNKYHK 157
Cdd:COG1263 80 GF----GGNPALAAVIGYLLVHPTLLNAYAVAG----------GYISFLGIPTLigyQGGVFPGILAGWLAAYL-EKFLK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 158 VVLPPYLGFFggsrFVPIVTAFAAIFLGV-LMFFIWPSIQAGIYH-VGGFVTKTGAIGTFVYGFILRLLGPLGLHHIFYL 235
Cdd:COG1263 145 KKLPDALGFF----FVPILTLLIMVPLALlVIGPIWPPIGNGIAAgLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNP 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 236 PFWQtALGGTlevkghlvqGTQNIFFAQLGdpdvtkyysgvsrfmsgrfitMMFGLCGAALAIYHTAKPehKKVVGGLML 315
Cdd:COG1263 221 IFWF-LLGGT---------GDDGLFPILAA---------------------AMFGQPGAALAVYLKAKP--NKKVKGLAI 267
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 316 SAALTSFLTGITEPLEFSFLFVAPILYVIHAFFDGLAFMMADIFNITIgQTFS-GGFIDFLLFgvlqGNSKTNYLYVIPI 394
Cdd:COG1263 268 SAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKA-FSFGvGGLIDFPSI----LNPGATNLLLYLI 342
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 395 GIVWFCLYYIVFRFLITKFNFKTPGREDKAAAQQVEATERAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLE 474
Cdd:COG1263 343 GLVIAFVYYFVFTFLIGREDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKDVVKLA 422
|
490 500 510
....*....|....*....|....*....|...
gi 446760948 475 STGAKGVIQQGTGVQVIYGPHVTVIKNEIEELL 507
Cdd:COG1263 423 AAGAVVVGVGGVGAVGGVGGGGVVIVIVIIILV 455
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
63-361 |
4.33e-76 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 241.07 E-value: 4.33e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 63 GSIVFQNLPVIFAIGVAIGLSRSDKGTAGLAALLGFLIMNATMNGLLTITGTLAKDQLAQNGqgmvlgiqtvETGVFGGI 142
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVGNFFGFEIAKVG----------YTGVVGPI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 143 ITGIMTAILHNKYHKVVLPPYLGFFGGSRFVPIVTAFAAIFLGVLMFFIWPSIqaGIYHVGGFVTKTG-AIGTFVYGFIL 221
Cdd:TIGR00852 71 IVGAIALALHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPV--GISALLHWLYSAGgALGGAIFGFLY 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 222 RLLGPLGLHHIFYLPFWQTALGGTLEVKGHLVQGTQNIFFAQLGDPDVTKYYSGVSRFMS-GRFITMMFGLCGAALAIYH 300
Cdd:TIGR00852 149 RLLVPTGLHHIFYAIFIQLIAGGTVIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSiGLPAAFSAGLGITEPAMYG 228
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446760948 301 TAKPEHKKVVGGLMLSAALTSFLTGITEPLEFSFLFVAPILYVIHAFFDGLAFMMADIFNI 361
Cdd:TIGR00852 229 VALRERRPFVAGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVLAGSIFTVAIGMGI 289
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
12-350 |
9.43e-61 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 202.19 E-value: 9.43e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 12 GKSFMLPIAILPAAGLLLGIGgalSNPNTVKAYPILDITLLQNIFTLMSAAGSIVFQNLPVIFAIGVAIGLSrSDKGTAG 91
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLG---NLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLA-GGDGVAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 92 LAALLGFLIMN--ATMNGLLTITGTlakdqlaqNGQGMVLGIQTVETGVFGGIITGIMTAILHNKYHKVV---LPPYLGF 166
Cdd:pfam02378 77 AAGLIGLLSFNlaAAISVALTAAGL--------SGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNItikLPDSLPF 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 167 FGGSRFVPIVTAF-AAIFLGVLMFFIWPSIQAGIYHVGGFVT-KTGAIGTFVYGFILRLLGPLGLHHIFYLPFWQTALGG 244
Cdd:pfam02378 149 FVGKRFVPIITGFvTLLVIGPVLGLIWPAIQGGLNALGLLLIiAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPIGG 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 245 TLEVKGHLVqgtqniffaqlgdpdvtkYYSGVSRFMSGRFiTMMFGLCGAALAIYHTAKPEHKKVVGGLMLSAALTSFLT 324
Cdd:pfam02378 229 SNPIANQQA------------------YGAGAAHILTGGF-DVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFLF 289
|
330 340
....*....|....*....|....*.
gi 446760948 325 GITEPLEFSFLFVAPILYVIHAFFDG 350
Cdd:pfam02378 290 GITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
432-507 |
1.64e-31 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 115.99 E-value: 1.64e-31
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446760948 432 TERAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLESTGAKGVIQQGTGVQVIYGPHVTVIKNEIEELL 507
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKLGVKGVVKNGGQVQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
432-507 |
2.57e-25 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 99.14 E-value: 2.57e-25
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446760948 432 TERAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLEST-GAKGVIQQGTGVQVIYGPHV-TVIKNEIEELL 507
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLgGVKGVVKNGGQYQVIIGPGVaDVYKEAIKLLG 78
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
411-493 |
5.16e-22 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 90.11 E-value: 5.16e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 411 TKFNFKTPGRED-----KAAAQQVEATERAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLESTGAKGVIQQG 485
Cdd:TIGR00826 1 TRLRLKTPGREKadeeaIAAGEGVKGVFTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKLGAHGVNPLQ 80
|
....*...
gi 446760948 486 TGVQVIYG 493
Cdd:TIGR00826 81 RAVQVISG 88
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
389-507 |
1.57e-20 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 88.62 E-value: 1.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 389 LYVIPIGIVWFCLYYIVFRFLITKFNFKTPGRED-----------KAAAQQVEATE------RAQTIVAGLGGKDNIEIV 451
Cdd:PRK09702 10 LTQIAIGLCFTLLYFVVFRTLILQFNMCTPGREDaevklyskaeyKASRGQTTAAEpkkeldQAAGILQALGGVGNISSI 89
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 446760948 452 DCCATRLRVTLHQ-NDKVDKVLLESTGAKGVIQQGTGVQVIYGPHVTVIKNEIEELL 507
Cdd:PRK09702 90 NNCATRLRIALHDmSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLI 146
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
436-467 |
2.35e-11 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 58.15 E-value: 2.35e-11
10 20 30
....*....|....*....|....*....|..
gi 446760948 436 QTIVAGLGGKDNIEIVDCCATRLRVTLHQNDK 467
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
435-509 |
8.32e-09 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 57.88 E-value: 8.32e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446760948 435 AQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLES-TGAKGVIQQGTGVQVIYGPHVTVIKNEIEELLGD 509
Cdd:PRK09796 9 ARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTiPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPG 84
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
433-509 |
2.20e-08 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 56.59 E-value: 2.20e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446760948 433 ERAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLEST-GAKGVIQQGTGVQVIYGPHVTVIKNEIEELLGD 509
Cdd:TIGR01995 3 DLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKIsGVITVVKSGGQYQVVIGNDVNDVYQALMDVLGL 80
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
432-507 |
4.26e-08 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 55.04 E-value: 4.26e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446760948 432 TERAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLES-TGAKGVIQQGTGVQVIYGPH-VTVIKNEIEELL 507
Cdd:PRK14905 275 SEIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKiDCVKGLFSIANQYQIILGAGiVEKIHEEMKALL 352
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
430-496 |
1.50e-06 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 50.87 E-value: 1.50e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446760948 430 EATERAQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLEST-GAKGVIQQGTGVQVIYGPHV 496
Cdd:PRK09824 2 EYTELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNpGVIMVVESGGQFQVVIGNHV 69
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
436-494 |
2.13e-06 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 50.06 E-value: 2.13e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446760948 436 QTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLES-TGAKGVIQQGTGVQVIYGP 494
Cdd:PRK09586 10 NTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTiEGVKGVILSDDQVQVVLGP 69
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
435-509 |
7.22e-06 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 48.45 E-value: 7.22e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446760948 435 AQTIVAGLGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLES-TGAKGVIQQGTGVQVIYGP-HVTVIKNEIEELLGD 509
Cdd:TIGR01996 6 AKEILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENlDGVKGTFFNSGQYQIIIGTgVVNKVYDEIVKLTGL 82
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
442-508 |
3.21e-03 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 40.05 E-value: 3.21e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446760948 442 LGGKDNIEIVDCCATRLRVTLHQNDKVDKVLLESTGA-KGVIQQGTGVQVIYGPHVTVIKNEIEELLG 508
Cdd:PRK11007 17 VGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMvKGCFTNAGQFQVVIGTEVGDYYKALIATTG 84
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