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Conserved domains on  [gi|446764826|ref|WP_000842082|]
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MULTISPECIES: fimbrial protein [Enterobacterales]

Protein Classification

fimbrial protein( domain architecture ID 646)

fimbrial protein similar to the type-1 fimbrial major subunit FimA, which is transported to the outer membrane by the lipoprotein sorting system, and a mature or processed FimA protein on the outer membrane is autopolymerized to form Fim fimbriae

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fimbrial super family cl01416
Fimbrial protein;
22-182 2.51e-45

Fimbrial protein;


The actual alignment was detected with superfamily member PRK15275:

Pssm-ID: 445401  Cd Length: 166  Bit Score: 147.20  E-value: 2.51e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826  22 WAVTGLLICCVGSGFAVAASKSVSMNLRVLVDAPPPCTVNGAAVEFGNVFINKINGVDYKRPIDYSLVCNNLAMDDLRLQ 101
Cdd:PRK15275   5 WKILVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQ 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826 102 MQATTVVINGETVISTGIPGFGIRVQKSSDHTILDLTSGSWLPFNFS-SGVPVLEAVPVKQSGTTLAAAEFNASATIVVD 180
Cdd:PRK15275  85 IQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSgSNGPELEAVPVKEPTTQLAGGDFNASATLVVD 164


                 ..
gi 446764826 181 YQ 182
Cdd:PRK15275 165 YQ 166
 
Name Accession Description Interval E-value
PRK15275 PRK15275
putative fimbrial protein SteD; Provisional
 22-182 2.51e-45

putative fimbrial protein SteD; Provisional


Pssm-ID: 185178  Cd Length: 166  Bit Score: 147.20  E-value: 2.51e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826  22 WAVTGLLICCVGSGFAVAASKSVSMNLRVLVDAPPPCTVNGAAVEFGNVFINKINGVDYKRPIDYSLVCNNLAMDDLRLQ 101
Cdd:PRK15275   5 WKILVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQ 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826 102 MQATTVVINGETVISTGIPGFGIRVQKSSDHTILDLTSGSWLPFNFS-SGVPVLEAVPVKQSGTTLAAAEFNASATIVVD 180
Cdd:PRK15275  85 IQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSgSNGPELEAVPVKEPTTQLAGGDFNASATLVVD 164


                 ..
gi 446764826 181 YQ 182
Cdd:PRK15275 165 YQ 166
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
27-182 7.72e-12

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 60.44  E-value: 7.72e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826  27 LLICCVGSGFAVAASKSVSMNLRVLVdapPPCTVNGAA----VEFGNVFINKINGVDY---KRPIDYSLV-CNNLAMDDL 98
Cdd:COG3539    9 LLALALSAAAAAAADGTVNFTGTVVA---PTCTINTGSkdqtVDLGTVSTSDLNGVGStsgPKPFSIKLTnCDAGTSNSV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826  99 RLQMQATTVVINGETV---ISTGIPGFGIRVQKSSDHTILDLTSGSWLPFNFSSGVPV-LEAVPVkQSGTTLAAAEFNAS 174
Cdd:COG3539   86 KVTFTGTADSANPGLLantGSGGASGVGIQLLDSDGTPIPLGTPSSAVTLTSNGSATLpFYARYV-ATGATVTAGSFNAT 164


                 ....*...
gi 446764826 175 ATIVVDYQ 182
Cdd:COG3539  165 ATFTIDYQ 172
Fimbrial pfam00419
Fimbrial protein;
51-182 1.54e-10

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 56.68  E-value: 1.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826   51 LVDAPPPCTVNG---AAVEFGNVFINKINGVDY---KRPIDYSLVCNNLAMDD-LRLQMQATTVVINGETVISTG----I 119
Cdd:pfam00419   7 VTRVPATCKITAgtpIEVDFGQIPVNELNAGGEgsrQKPFSITLECSSGSSAVkVTVGLFGTADASSPNLLLTGNgagaA 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446764826  120 PGFGIRVQKSSDHTILDLTSGSWLPFNFSSGVPV---LEAVPVKQSGTTLAAAEFNASATIVVDYQ 182
Cdd:pfam00419  87 TGVGIRLYDANGGALPPNNGTSSIPVSATAAVATgitFTASLVATTGGTPTAGDFNATATIVVDYQ 152
 
Name Accession Description Interval E-value
PRK15275 PRK15275
putative fimbrial protein SteD; Provisional
 22-182 2.51e-45

putative fimbrial protein SteD; Provisional


Pssm-ID: 185178  Cd Length: 166  Bit Score: 147.20  E-value: 2.51e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826  22 WAVTGLLICCVGSGFAVAASKSVSMNLRVLVDAPPPCTVNGAAVEFGNVFINKINGVDYKRPIDYSLVCNNLAMDDLRLQ 101
Cdd:PRK15275   5 WKILVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQ 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826 102 MQATTVVINGETVISTGIPGFGIRVQKSSDHTILDLTSGSWLPFNFS-SGVPVLEAVPVKQSGTTLAAAEFNASATIVVD 180
Cdd:PRK15275  85 IQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSgSNGPELEAVPVKEPTTQLAGGDFNASATLVVD 164


                 ..
gi 446764826 181 YQ 182
Cdd:PRK15275 165 YQ 166
PRK15286 PRK15286
putative minor fimbrial subunit StfE; Provisional
 39-182 2.78e-44

putative minor fimbrial subunit StfE; Provisional


Pssm-ID: 185186  Cd Length: 170  Bit Score: 144.50  E-value: 2.78e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826  39 AASKSVSMNLRVLVDAPPPCTVNGAAVEFGNVFINKINGVDYKRPIDYSLVCNNLAMDDLRLQMQATTVVINGETVISTG 118
Cdd:PRK15286  26 AGSKTVNMTLTIVVNAAPPCTVTGGEVEFGNVLTTKVDGVNYRQAVGYRLSCNGRVSDYLKLQIQGNAVTINGESVLQTD 105

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446764826 119 IPGFGIRVQKSSDHTILDLTSGSWLPFNFSSGV-PVLEAVPVKQSGTTLAAAEFNASATIVVDYQ 182
Cdd:PRK15286 106 VDGLGIRLQTATDGALISPGNTQWLSFQYSGGSgPAIEAIPVKNNGVTLTGGAFNAGATLVVDYQ 170
PRK15287 PRK15287
fimbrial minor subunit StfF;
28-182 1.23e-23

fimbrial minor subunit StfF;


Pssm-ID: 185187 [Multi-domain]  Cd Length: 158  Bit Score: 91.30  E-value: 1.23e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826  28 LICCVGSGFAVAASKSVSMNLRVLvdAPPPCTVNGAA---VEFGNVFINKINGVDYKRPIDYSLVCNNLAMDDlrlqMQA 104
Cdd:PRK15287   6 LTMLMGGSLAAQAADNLKFHGTLI--SPPNCTINNDQtidVKFGNLLINKIDGTRYAQNVPYEITCDSTVRDE----TMA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826 105 TTVVING------ETVISTGIPGFGIRVQKSSDhtilDLTSGSWLPFNFSSgVPVLEAVPVKQSGTTLAAAEFNASATIV 178
Cdd:PRK15287  80 MTLTLSGsvsdfnPAAVNTSVAGLGIELRQNDQ----PFTLGSTITVNEQS-IPVLKAIPVKKSGASLKEGGFDATATLQ 154


                 ....
gi 446764826 179 VDYQ 182
Cdd:PRK15287 155 VDYQ 158
PRK15276 PRK15276
putative fimbrial subunit SteE; Provisional
 55-182 2.85e-17

putative fimbrial subunit SteE; Provisional


Pssm-ID: 185179  Cd Length: 153  Bit Score: 74.37  E-value: 2.85e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826  55 PPPCTVNGAA---VEFGNVFINKINGVDYKRPIDYSLVCNNLAMDD-----LRLQMQATTVVINGetvISTGIPGFGIRV 126
Cdd:PRK15276  26 PPACTINNGEtleVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDaltftLSYLGTATPYSAKA---LTTNVPELGIEL 102

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446764826 127 QKSSdhTILdlTSGSWLPFNFSSgVPVLEAVPVKQSGTTLAAAEFNASATIVVDYQ 182
Cdd:PRK15276 103 QQNG--TVF--PPGTSLTINESS-LPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ 153
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
27-182 7.72e-12

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 60.44  E-value: 7.72e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826  27 LLICCVGSGFAVAASKSVSMNLRVLVdapPPCTVNGAA----VEFGNVFINKINGVDY---KRPIDYSLV-CNNLAMDDL 98
Cdd:COG3539    9 LLALALSAAAAAAADGTVNFTGTVVA---PTCTINTGSkdqtVDLGTVSTSDLNGVGStsgPKPFSIKLTnCDAGTSNSV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826  99 RLQMQATTVVINGETV---ISTGIPGFGIRVQKSSDHTILDLTSGSWLPFNFSSGVPV-LEAVPVkQSGTTLAAAEFNAS 174
Cdd:COG3539   86 KVTFTGTADSANPGLLantGSGGASGVGIQLLDSDGTPIPLGTPSSAVTLTSNGSATLpFYARYV-ATGATVTAGSFNAT 164


                 ....*...
gi 446764826 175 ATIVVDYQ 182
Cdd:COG3539  165 ATFTIDYQ 172
Fimbrial pfam00419
Fimbrial protein;
51-182 1.54e-10

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 56.68  E-value: 1.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446764826   51 LVDAPPPCTVNG---AAVEFGNVFINKINGVDY---KRPIDYSLVCNNLAMDD-LRLQMQATTVVINGETVISTG----I 119
Cdd:pfam00419   7 VTRVPATCKITAgtpIEVDFGQIPVNELNAGGEgsrQKPFSITLECSSGSSAVkVTVGLFGTADASSPNLLLTGNgagaA 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446764826  120 PGFGIRVQKSSDHTILDLTSGSWLPFNFSSGVPV---LEAVPVKQSGTTLAAAEFNASATIVVDYQ 182
Cdd:pfam00419  87 TGVGIRLYDANGGALPPNNGTSSIPVSATAAVATgitFTASLVATTGGTPTAGDFNATATIVVDYQ 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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