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Conserved domains on  [gi|446766221|ref|WP_000843477|]
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exopolysaccharide biosynthesis protein VpsJ [Vibrio cholerae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YyaL super family cl27897
Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin ...
 78-182 2.08e-05

Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains [General function prediction only];


The actual alignment was detected with superfamily member COG1331:

Pssm-ID: 440942 [Multi-domain]  Cd Length: 672  Bit Score: 46.76  E-value: 2.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446766221  78 ALFILGLIEEYQVTKDPALLTDAEQLAqwlvtQRCDEQIWHGACWGYhfdwkaraFFVPKGKPNVIT-------TVYVS- 149
Cdd:COG1331  475 AFLIEALLALYEATGDPRWLERALELA-----DEALEHFWDPEDGGF--------FFTADDAEDLIVrpkeiydGATPSg 541

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 446766221 150 -----RALHQLGQLTGRADWVDLALRSGDFIAGHLLTQ 182
Cdd:COG1331  542 nsvaaRNLLRLAALTGDERYRERAERALRAFAGLLARY 579
 
Name Accession Description Interval E-value
YyaL COG1331
Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin ...
 78-182 2.08e-05

Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains [General function prediction only];


Pssm-ID: 440942 [Multi-domain]  Cd Length: 672  Bit Score: 46.76  E-value: 2.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446766221  78 ALFILGLIEEYQVTKDPALLTDAEQLAqwlvtQRCDEQIWHGACWGYhfdwkaraFFVPKGKPNVIT-------TVYVS- 149
Cdd:COG1331  475 AFLIEALLALYEATGDPRWLERALELA-----DEALEHFWDPEDGGF--------FFTADDAEDLIVrpkeiydGATPSg 541

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 446766221 150 -----RALHQLGQLTGRADWVDLALRSGDFIAGHLLTQ 182
Cdd:COG1331  542 nsvaaRNLLRLAALTGDERYRERAERALRAFAGLLARY 579
 
Name Accession Description Interval E-value
YyaL COG1331
Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin ...
 78-182 2.08e-05

Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains [General function prediction only];


Pssm-ID: 440942 [Multi-domain]  Cd Length: 672  Bit Score: 46.76  E-value: 2.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446766221  78 ALFILGLIEEYQVTKDPALLTDAEQLAqwlvtQRCDEQIWHGACWGYhfdwkaraFFVPKGKPNVIT-------TVYVS- 149
Cdd:COG1331  475 AFLIEALLALYEATGDPRWLERALELA-----DEALEHFWDPEDGGF--------FFTADDAEDLIVrpkeiydGATPSg 541

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 446766221 150 -----RALHQLGQLTGRADWVDLALRSGDFIAGHLLTQ 182
Cdd:COG1331  542 nsvaaRNLLRLAALTGDERYRERAERALRAFAGLLARY 579
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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