Na+/H+ antiporter NhaC family protein similar to the secondary Na+/H+ antiporter NhaC and to archaeabacterial argininie/ornithine antiporter ArcD, which is responsible for uptake of arginine from the medium
Na+/H+ antiporter NhaC; A single member of the NhaC family, a protein from Bacillus firmus, ...
5-456
0e+00
Na+/H+ antiporter NhaC; A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds]
The actual alignment was detected with superfamily member TIGR00931:
Pssm-ID: 188097 Cd Length: 454 Bit Score: 544.78 E-value: 0e+00
Na+/H+ antiporter NhaC; A single member of the NhaC family, a protein from Bacillus firmus, ...
5-456
0e+00
Na+/H+ antiporter NhaC; A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 188097 Cd Length: 454 Bit Score: 544.78 E-value: 0e+00
Na+/H+ antiporter NhaC; A single member of the NhaC family, a protein from Bacillus firmus, ...
5-456
0e+00
Na+/H+ antiporter NhaC; A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 188097 Cd Length: 454 Bit Score: 544.78 E-value: 0e+00
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
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