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Conserved domains on  [gi|446770390|ref|WP_000847646|]
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MULTISPECIES: tail assembly protein [Escherichia]

Protein Classification

tail assembly protein( domain architecture ID 10008749)

tail assembly protein similar to Enterobacteria phage tail tip assembly protein I (TAPI), which plays a role in distal tail tip complex assembly

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4723 COG4723
Phage-related protein, tail assembly protein I [Mobilome: prophages, transposons];
2-172 3.78e-63

Phage-related protein, tail assembly protein I [Mobilome: prophages, transposons];


:

Pssm-ID: 443758  Cd Length: 197  Bit Score: 193.20  E-value: 3.78e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446770390   2 KTGAEAIRALATQLPAFRQKLSDG-----WYQVRIAGRDAGETELSARlneplANGAVIHIVPRLAGAKSGGVFQVVLGA 76
Cdd:COG4723   24 ASPAEAIRALCVTIPGFEQFMRTShkrglTYAVFRGKRNIGEDELELP-----VGGADIRIVPVIIGAKRGGLFQTILGA 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446770390  77 ALIAVAWWNP---VGWLGAAAVSGMYAAGASMILGGVAQMLAPKARTPTAASTDNGKQNTYFSSLDNMVAQGNVLPVLYG 153
Cdd:COG4723   99 ALIVAAFFFGggsLAAFGGGAAGALAMLGASMALGGVVQMLSPQPKGLSSRQSPDNKPSYAFGGPVNTTAQGNPVPLLYG 178

                        170
                 ....*....|....*....
gi 446770390 154 EMRVGSRVVSQEISTADEG 172
Cdd:COG4723  179 ERRIGGAVISAGIYAEDQQ 197
 
Name Accession Description Interval E-value
COG4723 COG4723
Phage-related protein, tail assembly protein I [Mobilome: prophages, transposons];
2-172 3.78e-63

Phage-related protein, tail assembly protein I [Mobilome: prophages, transposons];


Pssm-ID: 443758  Cd Length: 197  Bit Score: 193.20  E-value: 3.78e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446770390   2 KTGAEAIRALATQLPAFRQKLSDG-----WYQVRIAGRDAGETELSARlneplANGAVIHIVPRLAGAKSGGVFQVVLGA 76
Cdd:COG4723   24 ASPAEAIRALCVTIPGFEQFMRTShkrglTYAVFRGKRNIGEDELELP-----VGGADIRIVPVIIGAKRGGLFQTILGA 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446770390  77 ALIAVAWWNP---VGWLGAAAVSGMYAAGASMILGGVAQMLAPKARTPTAASTDNGKQNTYFSSLDNMVAQGNVLPVLYG 153
Cdd:COG4723   99 ALIVAAFFFGggsLAAFGGGAAGALAMLGASMALGGVVQMLSPQPKGLSSRQSPDNKPSYAFGGPVNTTAQGNPVPLLYG 178

                        170
                 ....*....|....*....
gi 446770390 154 EMRVGSRVVSQEISTADEG 172
Cdd:COG4723  179 ERRIGGAVISAGIYAEDQQ 197
Lambda_tail_I pfam06805
Bacteriophage lambda tail assembly protein I; This family consists of tail assembly proteins ...
 2-64 6.27e-09

Bacteriophage lambda tail assembly protein I; This family consists of tail assembly proteins from lambdoid and T1 phages and related prophages, e.g. the tail assembly protein I (TAPI). Members of this family contain a core ubiquitin fold domain. The exact function of TAPI is not clear but it is not incorporated into the mature tail. Gene neighborhoods reveal that TAPI co-occurs with genes encoding the host-specificity protein TapJ, and TapK, which contains a JAB metallopeptidase fused to an NlpC/P60 peptidase. It is proposed that the TAPI protein is processed by the peptidase domains of TapK.


Pssm-ID: 284272  Cd Length: 82  Bit Score: 50.65  E-value: 6.27e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446770390    2 KTGAEAIRALATQLPAFRQKlsdgwYQVRIAGRDaGETELSARL-NEPLANGAVIHIVPRLAGA 64
Cdd:pfam06805  25 ITLGEAIRALGIQEDCFEAL-----SDGPEAGVD-GMTVPVGIYaVETIVDGEVVTIVPWPAGG 82
 
Name Accession Description Interval E-value
COG4723 COG4723
Phage-related protein, tail assembly protein I [Mobilome: prophages, transposons];
2-172 3.78e-63

Phage-related protein, tail assembly protein I [Mobilome: prophages, transposons];


Pssm-ID: 443758  Cd Length: 197  Bit Score: 193.20  E-value: 3.78e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446770390   2 KTGAEAIRALATQLPAFRQKLSDG-----WYQVRIAGRDAGETELSARlneplANGAVIHIVPRLAGAKSGGVFQVVLGA 76
Cdd:COG4723   24 ASPAEAIRALCVTIPGFEQFMRTShkrglTYAVFRGKRNIGEDELELP-----VGGADIRIVPVIIGAKRGGLFQTILGA 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446770390  77 ALIAVAWWNP---VGWLGAAAVSGMYAAGASMILGGVAQMLAPKARTPTAASTDNGKQNTYFSSLDNMVAQGNVLPVLYG 153
Cdd:COG4723   99 ALIVAAFFFGggsLAAFGGGAAGALAMLGASMALGGVVQMLSPQPKGLSSRQSPDNKPSYAFGGPVNTTAQGNPVPLLYG 178

                        170
                 ....*....|....*....
gi 446770390 154 EMRVGSRVVSQEISTADEG 172
Cdd:COG4723  179 ERRIGGAVISAGIYAEDQQ 197
Lambda_tail_I pfam06805
Bacteriophage lambda tail assembly protein I; This family consists of tail assembly proteins ...
 2-64 6.27e-09

Bacteriophage lambda tail assembly protein I; This family consists of tail assembly proteins from lambdoid and T1 phages and related prophages, e.g. the tail assembly protein I (TAPI). Members of this family contain a core ubiquitin fold domain. The exact function of TAPI is not clear but it is not incorporated into the mature tail. Gene neighborhoods reveal that TAPI co-occurs with genes encoding the host-specificity protein TapJ, and TapK, which contains a JAB metallopeptidase fused to an NlpC/P60 peptidase. It is proposed that the TAPI protein is processed by the peptidase domains of TapK.


Pssm-ID: 284272  Cd Length: 82  Bit Score: 50.65  E-value: 6.27e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446770390    2 KTGAEAIRALATQLPAFRQKlsdgwYQVRIAGRDaGETELSARL-NEPLANGAVIHIVPRLAGA 64
Cdd:pfam06805  25 ITLGEAIRALGIQEDCFEAL-----SDGPEAGVD-GMTVPVGIYaVETIVDGEVVTIVPWPAGG 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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