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Conserved domains on  [gi|446779466|ref|WP_000856722|]
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DUF2574 family protein [Escherichia fergusonii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2574 super family cl12422
Protein of unknown function (DUF2574); This family of proteins appears to be restricted to ...
 1-93 2.18e-30

Protein of unknown function (DUF2574); This family of proteins appears to be restricted to Enterobacteriaceae. Members of the family are annotated as yehE however currently no function is known.


The actual alignment was detected with superfamily member pfam10836:

Pssm-ID: 287772  Cd Length: 93  Bit Score: 103.12  E-value: 2.18e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779466   1 MKTPLPFGIIVLVYGIAAPVSASQEATLSIQGKISPPTCSVDVVSSHFTQECGKMTRHFTLQQSVITAVRGVVTEVVAVP 80
Cdd:pfam10836  1 MKKYLLMGIIVLAYGLSSPVFASDTATLTISGRVTPPTCSMAVVNGQLQQRCGNLTYNVDTRHLASSPVRGVTTEVVTAP 80

                         90
                 ....*....|...
gi 446779466  81 EDGKRKIILSSYD 93
Cdd:pfam10836 81 GDSKRQIVLNRYD 93
 
Name Accession Description Interval E-value
DUF2574 pfam10836
Protein of unknown function (DUF2574); This family of proteins appears to be restricted to ...
 1-93 2.18e-30

Protein of unknown function (DUF2574); This family of proteins appears to be restricted to Enterobacteriaceae. Members of the family are annotated as yehE however currently no function is known.


Pssm-ID: 287772  Cd Length: 93  Bit Score: 103.12  E-value: 2.18e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779466   1 MKTPLPFGIIVLVYGIAAPVSASQEATLSIQGKISPPTCSVDVVSSHFTQECGKMTRHFTLQQSVITAVRGVVTEVVAVP 80
Cdd:pfam10836  1 MKKYLLMGIIVLAYGLSSPVFASDTATLTISGRVTPPTCSMAVVNGQLQQRCGNLTYNVDTRHLASSPVRGVTTEVVTAP 80

                         90
                 ....*....|...
gi 446779466  81 EDGKRKIILSSYD 93
Cdd:pfam10836 81 GDSKRQIVLNRYD 93
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-49 5.43e-03

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 33.86  E-value: 5.43e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 446779466   1 MKTPLpfGIIVLVYGIAAPVSASQEATLSIQGKISPPTCSVDVVSSHFT 49
Cdd:COG3539    1 MKKLL--LALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQT 47
 
Name Accession Description Interval E-value
DUF2574 pfam10836
Protein of unknown function (DUF2574); This family of proteins appears to be restricted to ...
 1-93 2.18e-30

Protein of unknown function (DUF2574); This family of proteins appears to be restricted to Enterobacteriaceae. Members of the family are annotated as yehE however currently no function is known.


Pssm-ID: 287772  Cd Length: 93  Bit Score: 103.12  E-value: 2.18e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446779466   1 MKTPLPFGIIVLVYGIAAPVSASQEATLSIQGKISPPTCSVDVVSSHFTQECGKMTRHFTLQQSVITAVRGVVTEVVAVP 80
Cdd:pfam10836  1 MKKYLLMGIIVLAYGLSSPVFASDTATLTISGRVTPPTCSMAVVNGQLQQRCGNLTYNVDTRHLASSPVRGVTTEVVTAP 80

                         90
                 ....*....|...
gi 446779466  81 EDGKRKIILSSYD 93
Cdd:pfam10836 81 GDSKRQIVLNRYD 93
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-49 5.43e-03

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 33.86  E-value: 5.43e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 446779466   1 MKTPLpfGIIVLVYGIAAPVSASQEATLSIQGKISPPTCSVDVVSSHFT 49
Cdd:COG3539    1 MKKLL--LALLLALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQT 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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