NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446787556|ref|WP_000864812|]
View 

MULTISPECIES: colicin M immunity protein [Gammaproteobacteria]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YebF super family cl23934
YebF-like protein; The YebF-like protein family appears to be a group of colicin immunity ...
 26-114 1.68e-14

YebF-like protein; The YebF-like protein family appears to be a group of colicin immunity proteins. As well as YebF the family includes cmi, the colicin M immunity protein. This domain family is found in bacteria, and is approximately 80 amino acids in length. The alignment contains two conserved cysteine residues that form a disulphide bond in the solved structure.


The actual alignment was detected with superfamily member pfam13995:

Pssm-ID: 474099  Cd Length: 89  Bit Score: 63.60  E-value: 1.68e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446787556   26 DKGPACYQVSDEQARTFVKNDYLQ-RMKRWDNDVQLLGTEIPkITWEKIErsltDV-EDEKTLLVPFKAEGPEGKRMYYG 103
Cdd:pfam13995   3 VKFPACEDLTKAQIAAQVKRDYLQnRIPRWADDKKQLGTSKP-VAWVNVD----DItGDKDKWNVPLTVRGSKADLSYQV 77

                          90
                  ....*....|.
gi 446787556  104 MYHCEEGYVEY 114
Cdd:pfam13995  78 TVDCQAGTISY 88
 
Name Accession Description Interval E-value
YebF pfam13995
YebF-like protein; The YebF-like protein family appears to be a group of colicin immunity ...
 26-114 1.68e-14

YebF-like protein; The YebF-like protein family appears to be a group of colicin immunity proteins. As well as YebF the family includes cmi, the colicin M immunity protein. This domain family is found in bacteria, and is approximately 80 amino acids in length. The alignment contains two conserved cysteine residues that form a disulphide bond in the solved structure.


Pssm-ID: 433634  Cd Length: 89  Bit Score: 63.60  E-value: 1.68e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446787556   26 DKGPACYQVSDEQARTFVKNDYLQ-RMKRWDNDVQLLGTEIPkITWEKIErsltDV-EDEKTLLVPFKAEGPEGKRMYYG 103
Cdd:pfam13995   3 VKFPACEDLTKAQIAAQVKRDYLQnRIPRWADDKKQLGTSKP-VAWVNVD----DItGDKDKWNVPLTVRGSKADLSYQV 77

                          90
                  ....*....|.
gi 446787556  104 MYHCEEGYVEY 114
Cdd:pfam13995  78 TVDCQAGTISY 88
PRK13680 PRK13680
hypothetical protein; Provisional
 10-114 7.62e-08

hypothetical protein; Provisional


Pssm-ID: 184237  Cd Length: 117  Bit Score: 47.02  E-value: 7.62e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446787556  10 FILTIIALAAVFFWSED-------KGPACYQVSDEQARTFVKNDYLQ-RMKRWDNDVQLLGTEIPkITWEKIErsltDVE 81
Cdd:PRK13680   6 LLGLLLLSACGSVFAANaetsrsvKFPKCEGLDAAGIAASVKRDYLQnRIARWADDQKQLGQADP-VAWVNVQ----DIT 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 446787556  82 -DEKTLLVPFKAEGPEGKRMYYGMYHCEEGYVEY 114
Cdd:PRK13680  81 gKDDKWQVPLTVRGKSADIHYQVVVDCKAGTAEY 114
 
Name Accession Description Interval E-value
YebF pfam13995
YebF-like protein; The YebF-like protein family appears to be a group of colicin immunity ...
 26-114 1.68e-14

YebF-like protein; The YebF-like protein family appears to be a group of colicin immunity proteins. As well as YebF the family includes cmi, the colicin M immunity protein. This domain family is found in bacteria, and is approximately 80 amino acids in length. The alignment contains two conserved cysteine residues that form a disulphide bond in the solved structure.


Pssm-ID: 433634  Cd Length: 89  Bit Score: 63.60  E-value: 1.68e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446787556   26 DKGPACYQVSDEQARTFVKNDYLQ-RMKRWDNDVQLLGTEIPkITWEKIErsltDV-EDEKTLLVPFKAEGPEGKRMYYG 103
Cdd:pfam13995   3 VKFPACEDLTKAQIAAQVKRDYLQnRIPRWADDKKQLGTSKP-VAWVNVD----DItGDKDKWNVPLTVRGSKADLSYQV 77

                          90
                  ....*....|.
gi 446787556  104 MYHCEEGYVEY 114
Cdd:pfam13995  78 TVDCQAGTISY 88
PRK13680 PRK13680
hypothetical protein; Provisional
 10-114 7.62e-08

hypothetical protein; Provisional


Pssm-ID: 184237  Cd Length: 117  Bit Score: 47.02  E-value: 7.62e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446787556  10 FILTIIALAAVFFWSED-------KGPACYQVSDEQARTFVKNDYLQ-RMKRWDNDVQLLGTEIPkITWEKIErsltDVE 81
Cdd:PRK13680   6 LLGLLLLSACGSVFAANaetsrsvKFPKCEGLDAAGIAASVKRDYLQnRIARWADDQKQLGQADP-VAWVNVQ----DIT 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 446787556  82 -DEKTLLVPFKAEGPEGKRMYYGMYHCEEGYVEY 114
Cdd:PRK13680  81 gKDDKWQVPLTVRGKSADIHYQVVVDCKAGTAEY 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH