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Conserved domains on  [gi|446801479|ref|WP_000878735|]
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MULTISPECIES: Ig-like domain-containing protein [Bacillus]

Protein Classification

Ig-like domain-containing protein( domain architecture ID 11475235)

Ig-like domain containing protein similar to bacterial surface-expressed proteins that mediate host cell invasion or attachment and to phage Ig-like domains, which may play an accessory role in phage infection by weakly interacting with carbohydrates on the bacterial cell surface

Gene Ontology:  GO:0005515
PubMed:  10436082|9417933|7932691|16631788

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 33-126 1.39e-12

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


:

Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 63.17  E-value: 1.39e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446801479  33 ISIAPSVISVIGVHMEKHKLKIKTGQNIVLSASILPIQATNKELIWSNMNSDIITIYPKGdtvTITGKSAGRAVVIVTTA 112
Cdd:COG5492  336 VATTVDVVPVTGVTLNPTSVTLAVGQTLTLTATVTPANATNKNVTWSSSDPSVATVDSNG---LVTAVAAGTATITATTK 412

                         90
                 ....*....|....
gi 446801479 113 EGKFRDLCVIHVQP 126
Cdd:COG5492  413 DGGKTATCTVTVTA 426
 
Name Accession Description Interval E-value
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 33-126 1.39e-12

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 63.17  E-value: 1.39e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446801479  33 ISIAPSVISVIGVHMEKHKLKIKTGQNIVLSASILPIQATNKELIWSNMNSDIITIYPKGdtvTITGKSAGRAVVIVTTA 112
Cdd:COG5492  336 VATTVDVVPVTGVTLNPTSVTLAVGQTLTLTATVTPANATNKNVTWSSSDPSVATVDSNG---LVTAVAAGTATITATTK 412

                         90
                 ....*....|....
gi 446801479 113 EGKFRDLCVIHVQP 126
Cdd:COG5492  413 DGGKTATCTVTVTA 426
 
Name Accession Description Interval E-value
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 33-126 1.39e-12

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 63.17  E-value: 1.39e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446801479  33 ISIAPSVISVIGVHMEKHKLKIKTGQNIVLSASILPIQATNKELIWSNMNSDIITIYPKGdtvTITGKSAGRAVVIVTTA 112
Cdd:COG5492  336 VATTVDVVPVTGVTLNPTSVTLAVGQTLTLTATVTPANATNKNVTWSSSDPSVATVDSNG---LVTAVAAGTATITATTK 412

                         90
                 ....*....|....
gi 446801479 113 EGKFRDLCVIHVQP 126
Cdd:COG5492  413 DGGKTATCTVTVTA 426
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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