NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446823297|ref|WP_000900553|]
View 

MULTISPECIES: SopA family protein [Enterobacteriaceae]

Protein Classification

SopA family protein( domain architecture ID 11484468)

SopA family protein similar to Escherichia coli protein YjbI

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK09718 PRK09718
SopA family protein;
15-526 0e+00

SopA family protein;


:

Pssm-ID: 182045 [Multi-domain]  Cd Length: 512  Bit Score: 992.24  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297  15 IKHGVVQGNNIVDLDLLRNFNGVPGLNRENFIYISNIFLNIKQRNEKNHAINMFREVSISNDTISVKFYRNEEIECACDF 94
Cdd:PRK09718   1 IKHGVVQGNNIVDFDLLRNFNGGPGLNRENFIYISNIFLNIKQRNEKNHSINMFREVSISGDIVSVKFYRNEKIECACDF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297  95 LMDKDAQGYIDLSDLDLTSCHFKGDVISKVSFLSSNLQHVTFECKEIGDCNFTTATVDNVIFKCRRLHNVIFIKASGECV 174
Cdd:PRK09718  81 LMDKDAQGYIDLSDLDLTSCHFKGDVISKVSFLSSNLQHVTFECKEIGDCNFTTAIVDNVIFKCRRLHNVIFIKASGEYV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 175 DFSKNILDTVDFSRSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSDKEISFIKSNLTAVMFDHVRISTGNFKDSVT 254
Cdd:PRK09718 161 DFSKNILDTVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLTAVMFDHVRISTGNFKDCIT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 255 QLMVLSIDYSDIFGNEDLDDYINNIIKMIDTLPDEPAILKSVLAVKLVMQLKILNIVNKNFIENMKKIFSHCPYIKDPII 334
Cdd:PRK09718 241 EQLELTIDYSDIFGNEDLDGYINNIIKMIDTLPDNAMILKSVLAVKLVMQLKILNIVNKNFIENMKKIFSHCPYIKDPII 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 335 RSYIHSDEDNKFDNFMRQNRFSKVNFDTQQMIDFINRFNMNKWLIDKNNNFFIQLIDQALRSTDDMIKANAWHLYKEWIR 414
Cdd:PRK09718 321 RSYIHPDEDNKFDNFMRQNRFSKVNFDTQQMIDFINRFNMNKWLIDKNNNFFIQLIDQALRSTDDTIKANAWHLYKEWIR 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 415 SDDVSPIFIETEDNLRTFNTNELTRNDNIFILFSSVDDGPVMVVSSQRLHDMLNPTKDTNWNSTYIYKSRHEMLPVNLTP 494
Cdd:PRK09718 401 SDDVSPLFIEIEDNLRTFNTNELTRNDNIFILFSSVDDGPVMVVSSQRLHDMLNPTKDTNWNSTYIYKSRHEMLPVNLTP 480

                        490       500       510
                 ....*....|....*....|....*....|..
gi 446823297 495 ETLFGSKSQDKHALFPIFTASWRANRIKNKGI 526
Cdd:PRK09718 481 ETLFGSKSHDKHALFPIFTASWRANRIKNKGI 512
 
Name Accession Description Interval E-value
PRK09718 PRK09718
SopA family protein;
15-526 0e+00

SopA family protein;


Pssm-ID: 182045 [Multi-domain]  Cd Length: 512  Bit Score: 992.24  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297  15 IKHGVVQGNNIVDLDLLRNFNGVPGLNRENFIYISNIFLNIKQRNEKNHAINMFREVSISNDTISVKFYRNEEIECACDF 94
Cdd:PRK09718   1 IKHGVVQGNNIVDFDLLRNFNGGPGLNRENFIYISNIFLNIKQRNEKNHSINMFREVSISGDIVSVKFYRNEKIECACDF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297  95 LMDKDAQGYIDLSDLDLTSCHFKGDVISKVSFLSSNLQHVTFECKEIGDCNFTTATVDNVIFKCRRLHNVIFIKASGECV 174
Cdd:PRK09718  81 LMDKDAQGYIDLSDLDLTSCHFKGDVISKVSFLSSNLQHVTFECKEIGDCNFTTAIVDNVIFKCRRLHNVIFIKASGEYV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 175 DFSKNILDTVDFSRSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSDKEISFIKSNLTAVMFDHVRISTGNFKDSVT 254
Cdd:PRK09718 161 DFSKNILDTVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLTAVMFDHVRISTGNFKDCIT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 255 QLMVLSIDYSDIFGNEDLDDYINNIIKMIDTLPDEPAILKSVLAVKLVMQLKILNIVNKNFIENMKKIFSHCPYIKDPII 334
Cdd:PRK09718 241 EQLELTIDYSDIFGNEDLDGYINNIIKMIDTLPDNAMILKSVLAVKLVMQLKILNIVNKNFIENMKKIFSHCPYIKDPII 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 335 RSYIHSDEDNKFDNFMRQNRFSKVNFDTQQMIDFINRFNMNKWLIDKNNNFFIQLIDQALRSTDDMIKANAWHLYKEWIR 414
Cdd:PRK09718 321 RSYIHPDEDNKFDNFMRQNRFSKVNFDTQQMIDFINRFNMNKWLIDKNNNFFIQLIDQALRSTDDTIKANAWHLYKEWIR 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 415 SDDVSPIFIETEDNLRTFNTNELTRNDNIFILFSSVDDGPVMVVSSQRLHDMLNPTKDTNWNSTYIYKSRHEMLPVNLTP 494
Cdd:PRK09718 401 SDDVSPLFIEIEDNLRTFNTNELTRNDNIFILFSSVDDGPVMVVSSQRLHDMLNPTKDTNWNSTYIYKSRHEMLPVNLTP 480

                        490       500       510
                 ....*....|....*....|....*....|..
gi 446823297 495 ETLFGSKSQDKHALFPIFTASWRANRIKNKGI 526
Cdd:PRK09718 481 ETLFGSKSHDKHALFPIFTASWRANRIKNKGI 512
SopA pfam13981
SopA-like central domain; This domain is found in the E. coli Type III secretion effector ...
 293-424 4.94e-56

SopA-like central domain; This domain is found in the E. coli Type III secretion effector proteins SopA and NleL. These proteins have been shown to act as E3 ubiquitin ligase enzymes.


Pssm-ID: 433623  Cd Length: 126  Bit Score: 183.59  E-value: 4.94e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297  293 LKSVLAVKLVMQLKILNIVNKNFIENMKKIFSHCPYIKDPIIRSYIHSDEDNKFD--NFMRQNRFSKVNFDTqqmidfin 370
Cdd:pfam13981   1 LKVQLMEDLVKSLRLTEACIRPVESSLVSVLSHPPYTQSPLISEWLGPVQERFFAapDTMRQQRILPVLLDT-------- 72

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 446823297  371 rFNMNKWLIDKNNNFFIQLIDQALRSTD-DMIKANAWHLYKEWIRSDDVSPIFIE 424
Cdd:pfam13981  73 -FDRNSAAMTTHSGLFIQVILQAMTGVDtDGTRQKAAALYEQYLAHPAVSPHIHN 126
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
105-252 1.18e-10

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 60.34  E-value: 1.18e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 105 DLSDLDLTSCHFKGDVISKV----SFLSSNLQHVTFECKEIGDCNFTTATVDNVIFKCRRLHNVIFIKASGECVDFSKni 180
Cdd:COG1357    6 DLSGADLSGADLSGADLSGAnlsgALSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSG-- 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446823297 181 LDTVDFSRSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFlsdKEISFIKSNLTAVMFDHVRISTGNFKDS 252
Cdd:COG1357   84 ANLANLSGANLSGANLSGANLRGANLSGANLSGADLSGADL---SGANLSGADLSGANLSGANLSGADLSGA 152
 
Name Accession Description Interval E-value
PRK09718 PRK09718
SopA family protein;
15-526 0e+00

SopA family protein;


Pssm-ID: 182045 [Multi-domain]  Cd Length: 512  Bit Score: 992.24  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297  15 IKHGVVQGNNIVDLDLLRNFNGVPGLNRENFIYISNIFLNIKQRNEKNHAINMFREVSISNDTISVKFYRNEEIECACDF 94
Cdd:PRK09718   1 IKHGVVQGNNIVDFDLLRNFNGGPGLNRENFIYISNIFLNIKQRNEKNHSINMFREVSISGDIVSVKFYRNEKIECACDF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297  95 LMDKDAQGYIDLSDLDLTSCHFKGDVISKVSFLSSNLQHVTFECKEIGDCNFTTATVDNVIFKCRRLHNVIFIKASGECV 174
Cdd:PRK09718  81 LMDKDAQGYIDLSDLDLTSCHFKGDVISKVSFLSSNLQHVTFECKEIGDCNFTTAIVDNVIFKCRRLHNVIFIKASGEYV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 175 DFSKNILDTVDFSRSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSDKEISFIKSNLTAVMFDHVRISTGNFKDSVT 254
Cdd:PRK09718 161 DFSKNILDTVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLTAVMFDHVRISTGNFKDCIT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 255 QLMVLSIDYSDIFGNEDLDDYINNIIKMIDTLPDEPAILKSVLAVKLVMQLKILNIVNKNFIENMKKIFSHCPYIKDPII 334
Cdd:PRK09718 241 EQLELTIDYSDIFGNEDLDGYINNIIKMIDTLPDNAMILKSVLAVKLVMQLKILNIVNKNFIENMKKIFSHCPYIKDPII 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 335 RSYIHSDEDNKFDNFMRQNRFSKVNFDTQQMIDFINRFNMNKWLIDKNNNFFIQLIDQALRSTDDMIKANAWHLYKEWIR 414
Cdd:PRK09718 321 RSYIHPDEDNKFDNFMRQNRFSKVNFDTQQMIDFINRFNMNKWLIDKNNNFFIQLIDQALRSTDDTIKANAWHLYKEWIR 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 415 SDDVSPIFIETEDNLRTFNTNELTRNDNIFILFSSVDDGPVMVVSSQRLHDMLNPTKDTNWNSTYIYKSRHEMLPVNLTP 494
Cdd:PRK09718 401 SDDVSPLFIEIEDNLRTFNTNELTRNDNIFILFSSVDDGPVMVVSSQRLHDMLNPTKDTNWNSTYIYKSRHEMLPVNLTP 480

                        490       500       510
                 ....*....|....*....|....*....|..
gi 446823297 495 ETLFGSKSQDKHALFPIFTASWRANRIKNKGI 526
Cdd:PRK09718 481 ETLFGSKSHDKHALFPIFTASWRANRIKNKGI 512
SopA pfam13981
SopA-like central domain; This domain is found in the E. coli Type III secretion effector ...
 293-424 4.94e-56

SopA-like central domain; This domain is found in the E. coli Type III secretion effector proteins SopA and NleL. These proteins have been shown to act as E3 ubiquitin ligase enzymes.


Pssm-ID: 433623  Cd Length: 126  Bit Score: 183.59  E-value: 4.94e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297  293 LKSVLAVKLVMQLKILNIVNKNFIENMKKIFSHCPYIKDPIIRSYIHSDEDNKFD--NFMRQNRFSKVNFDTqqmidfin 370
Cdd:pfam13981   1 LKVQLMEDLVKSLRLTEACIRPVESSLVSVLSHPPYTQSPLISEWLGPVQERFFAapDTMRQQRILPVLLDT-------- 72

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 446823297  371 rFNMNKWLIDKNNNFFIQLIDQALRSTD-DMIKANAWHLYKEWIRSDDVSPIFIE 424
Cdd:pfam13981  73 -FDRNSAAMTTHSGLFIQVILQAMTGVDtDGTRQKAAALYEQYLAHPAVSPHIHN 126
PRK15377 PRK15377
type III secretion system effector HECT-type E3 ubiquitin transferase;
143-516 2.46e-23

type III secretion system effector HECT-type E3 ubiquitin transferase;


Pssm-ID: 185275 [Multi-domain]  Cd Length: 782  Bit Score: 104.38  E-value: 2.46e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 143 DCNFTTA-----TVDNVIFKCRRLHNVIFIKASgecvDFSKNILDTVDFSRSQL-----THSNFRECQIRNSNFDNCYLY 212
Cdd:PRK15377 194 DRDFSNAdfrniNFSKINPSGFMLRDGDIIKGF----NFSNSKFTYSDISHLHFdecrfTYSTLSDVVCSNTKFSNSDMN 269

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 213 ASHFTRAEFLSDKEIsFIKSNLTAVMFDHVRISTG-------NFKDSVTQLMVLSIDYSDIFGNED-----------LDD 274
Cdd:PRK15377 270 EASLKYSITTQQQPS-FIETTLKNTIIIHKANLSGvilnepdNSSPPSVSLGGNFIRLGDIWLQMPllwtenaidgfLNH 348

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 275 YINN---IIKMIDTLPDEPAILKSVLAVKLVMQLKILNIVNKNF--IE-NMKKIFSHCPYIKDPIIRSYIHSDEDNKFDN 348
Cdd:PRK15377 349 EHNNgksILMTINTLPDKYNQEKVRAMEELVKSIRLGRLTEAAIrpVEsSLVSVLAHPPYTQSALIQEWLEPVQERFFAH 428

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 349 FMRQNRFSKVN-----FDTQQMIDFINRFNMNKWLIDKNNNFFIQLIDQALRSTD--DMIKANAWHLYKEWIRSDDVSPI 421
Cdd:PRK15377 429 QCQTYNDVPLPapdtyYQQRSLPVLLDSFDRNSAAMTTHSGLFNQVILHCMTGVDctDGMRQKAAALYEQYLAHPAVSPH 508

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 422 FIETEDNLRTFNTNELTRNDNIFILFSSVDDGPVMVVSSQRLHDMLNPTKDTNWNSTYIYKSRHEMLPVNLTPETLFgsk 501
Cdd:PRK15377 509 IHNGLFGNYDGSPDWTTRAADNFLLLSSQDSDTAMMLSTDTLLTMLNPTPDTAWDNFYLLRAGENVSTAQISPVELF--- 585

                        410
                 ....*....|....*
gi 446823297 502 SQDkhalFPIFTASW 516
Cdd:PRK15377 586 RHD----FPVFLAAF 596
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
105-252 1.18e-10

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 60.34  E-value: 1.18e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 105 DLSDLDLTSCHFKGDVISKV----SFLSSNLQHVTFECKEIGDCNFTTATVDNVIFKCRRLHNVIFIKASGECVDFSKni 180
Cdd:COG1357    6 DLSGADLSGADLSGADLSGAnlsgALSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSG-- 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446823297 181 LDTVDFSRSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFlsdKEISFIKSNLTAVMFDHVRISTGNFKDS 252
Cdd:COG1357   84 ANLANLSGANLSGANLSGANLRGANLSGANLSGADLSGADL---SGANLSGADLSGANLSGANLSGADLSGA 152
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
105-249 1.74e-09

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 57.26  E-value: 1.74e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 105 DLSDLDLTSCHFKGDVISKVSFLSSNLQHvTFECKEIGDCNFTTATVDNVIFKCRRLHNVIFIKASGECVDFSKNILDTV 184
Cdd:COG1357    1 DLSGADLSGADLSGADLSGADLSGANLSG-ALSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGA 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446823297 185 DFSRSQLThsNFRECQIRNSNFDNCYLYASHFTRAEFlsdKEISFIKSNLTAVMFDHVRISTGNF 249
Cdd:COG1357   80 DLSGANLA--NLSGANLSGANLSGANLRGANLSGANL---SGADLSGADLSGANLSGADLSGANL 139
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
105-221 4.02e-08

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 53.02  E-value: 4.02e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 105 DLSDLDLTSCHFKGDVISKVSFLSSNLQHVTFEckeigDCNFTTATVDNVIFKCRR---LHNVIFIKASGECVDFSKNIL 181
Cdd:COG1357   40 NLSGANLTGANLSGADLSGADLSGANLSGADLS-----GANLTGADLSGANLANLSganLSGANLSGANLRGANLSGANL 114

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 446823297 182 DTVDFSRSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEF 221
Cdd:COG1357  115 SGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADL 154
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
130-252 1.05e-06

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 49.17  E-value: 1.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 130 NLQHVTFECKEIGDCNFTTATVDNVIFKcRRLHNVIFIKAsgecvDFSKNILDTVDFSRSQLTHSNFRECQIRNSNFDNC 209
Cdd:COG1357    1 DLSGADLSGADLSGADLSGADLSGANLS-GALSGANLSGA-----NLSGANLTGANLSGADLSGADLSGANLSGADLSGA 74

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 446823297 210 YLYASHFTRAEFLSDKEISFIKSNLTAVMFDHVRISTGNFKDS 252
Cdd:COG1357   75 NLTGADLSGANLANLSGANLSGANLSGANLRGANLSGANLSGA 117
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
105-221 1.68e-06

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 48.40  E-value: 1.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 105 DLSDLDLTSCHFKGDVISKVSFLSSNLQHVTFEckeigDCNFTT---ATVDNVIFKCRRLHNVIFIKASGECVDFSKNIL 181
Cdd:COG1357   50 NLSGADLSGADLSGANLSGADLSGANLTGADLS-----GANLANlsgANLSGANLSGANLRGANLSGANLSGADLSGADL 124

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 446823297 182 DTVDFSRSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEF 221
Cdd:COG1357  125 SGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANL 164
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
105-221 5.68e-06

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 46.86  E-value: 5.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297 105 DLSDLDLTSCHFKGDVISKVSFLSSNLQHVTFECkeIGDCNFTTATVDNVIFKCRRLHNVIFIKASGECVDFSKNILDTV 184
Cdd:COG1357   55 DLSGADLSGANLSGADLSGANLTGADLSGANLAN--LSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGA 132

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 446823297 185 DFSRSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEF 221
Cdd:COG1357  133 DLSGANLSGANLSGADLSGADLSGANLSGANLSGANL 169
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
140-216 1.23e-05

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 43.42  E-value: 1.23e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446823297  140 EIGDCNFTTATVDNVIFKCRRLHNVIFIKASGECVDFSKNILDTVDFSRSQLTHSNFRECQIRNSNFDNCYLYASHF 216
Cdd:pfam13599   2 DFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGADF 78
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
160-249 8.10e-05

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 41.11  E-value: 8.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446823297  160 RLHNVIFIKASGECVDFSKNILDTVDFSRSQLTHSNFRECQIRNSNFDNCYLyashftraeflsdKEISFIKSNLTAVMF 239
Cdd:pfam13599   2 DFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQL-------------KNAQFSGCNLKNSNF 68

                          90
                  ....*....|
gi 446823297  240 DHVRISTGNF 249
Cdd:pfam13599  69 SDVKLKGADF 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH