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Conserved domains on  [gi|446836601|ref|WP_000913857|]
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MULTISPECIES: type II CAAX prenyl endopeptidase Rce1 family protein [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdiL super family cl47285
Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, ...
 47-155 7.76e-04

Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG1266:

Pssm-ID: 440877 [Multi-domain]  Cd Length: 97  Bit Score: 36.69  E-value: 7.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446836601  47 APLILQVLLGVLAAPIYETIVFQVFLF-WLLSWIPYIknhdyLIILIASIIFGLNHPYGITYIVGTTIIGLLYNYAYWVY 125
Cdd:COG1266    2 LWLLLFLLVVVILAPIAEELLFRGYLLgRLRRRFGPW-----LAILLSSLLFGLLHLPNLLGFLPAFLLGLVLGLLYLRT 76

                         90       100       110
                 ....*....|....*....|....*....|
gi 446836601 126 KKknekyqvtmsaFGVVFLIHLLHNSVTFI 155
Cdd:COG1266   77 GS-----------LWVPILLHALNNLLALL 95
 
Name Accession Description Interval E-value
YdiL COG1266
Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, ...
 47-155 7.76e-04

Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440877 [Multi-domain]  Cd Length: 97  Bit Score: 36.69  E-value: 7.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446836601  47 APLILQVLLGVLAAPIYETIVFQVFLF-WLLSWIPYIknhdyLIILIASIIFGLNHPYGITYIVGTTIIGLLYNYAYWVY 125
Cdd:COG1266    2 LWLLLFLLVVVILAPIAEELLFRGYLLgRLRRRFGPW-----LAILLSSLLFGLLHLPNLLGFLPAFLLGLVLGLLYLRT 76

                         90       100       110
                 ....*....|....*....|....*....|
gi 446836601 126 KKknekyqvtmsaFGVVFLIHLLHNSVTFI 155
Cdd:COG1266   77 GS-----------LWVPILLHALNNLLALL 95
 
Name Accession Description Interval E-value
YdiL COG1266
Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, ...
 47-155 7.76e-04

Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440877 [Multi-domain]  Cd Length: 97  Bit Score: 36.69  E-value: 7.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446836601  47 APLILQVLLGVLAAPIYETIVFQVFLF-WLLSWIPYIknhdyLIILIASIIFGLNHPYGITYIVGTTIIGLLYNYAYWVY 125
Cdd:COG1266    2 LWLLLFLLVVVILAPIAEELLFRGYLLgRLRRRFGPW-----LAILLSSLLFGLLHLPNLLGFLPAFLLGLVLGLLYLRT 76

                         90       100       110
                 ....*....|....*....|....*....|
gi 446836601 126 KKknekyqvtmsaFGVVFLIHLLHNSVTFI 155
Cdd:COG1266   77 GS-----------LWVPILLHALNNLLALL 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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