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Conserved domains on  [gi|446845257|ref|WP_000922513|]
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FliM/FliN family flagellar motor switch protein [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FliM super family cl34368
Flagellar motor switch protein FliM [Cell motility];
206-269 1.20e-03

Flagellar motor switch protein FliM [Cell motility];


The actual alignment was detected with superfamily member COG1868:

Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 39.76  E-value: 1.20e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446845257 206 IKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPI--SLGETFPVAIGQSELFSALIVEDKDKL 269
Cdd:COG1868  248 LREELEEAEVELSAELGETEITLRELLNLKVGDVIPLdkKVDDPLTVYVGGVPKFEGKPGVSNGRL 313
 
Name Accession Description Interval E-value
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
206-269 1.20e-03

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 39.76  E-value: 1.20e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446845257 206 IKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPI--SLGETFPVAIGQSELFSALIVEDKDKL 269
Cdd:COG1868  248 LREELEEAEVELSAELGETEITLRELLNLKVGDVIPLdkKVDDPLTVYVGGVPKFEGKPGVSNGRL 313
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 215-269 2.15e-03

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 35.78  E-value: 2.15e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 446845257  215 LTLNVKIAELSMNVADLAQIKAGDILPI--SLGETFPVAIGQSELFSALIVEDKDKL 269
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLdkPADEPVDVLVNGKPKFRGELGVVGGNL 57
 
Name Accession Description Interval E-value
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
206-269 1.20e-03

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 39.76  E-value: 1.20e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446845257 206 IKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPI--SLGETFPVAIGQSELFSALIVEDKDKL 269
Cdd:COG1868  248 LREELEEAEVELSAELGETEITLRELLNLKVGDVIPLdkKVDDPLTVYVGGVPKFEGKPGVSNGRL 313
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 215-269 2.15e-03

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 35.78  E-value: 2.15e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 446845257  215 LTLNVKIAELSMNVADLAQIKAGDILPI--SLGETFPVAIGQSELFSALIVEDKDKL 269
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLdkPADEPVDVLVNGKPKFRGELGVVGGNL 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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