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Conserved domains on  [gi|446856817|ref|WP_000934073|]
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MULTISPECIES: ATP-dependent Clp protease ATP-binding subunit ClpA [Escherichia]

Protein Classification

ATP-dependent Clp protease ATP-binding subunit( domain architecture ID 11485160)

ClpA/ClpB family ATP-dependent Clp protease ATP-binding subunit is a component of the Clp chaperone-protease complex that is involved in protein degradation and disaggregation

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
clpA PRK11034
ATP-dependent Clp protease ATP-binding subunit; Provisional
1-759 0e+00

ATP-dependent Clp protease ATP-binding subunit; Provisional


:

Pssm-ID: 236828 [Multi-domain]  Cd Length: 758  Bit Score: 1596.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   1 MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQP 80
Cdd:PRK11034   1 MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  81 TLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSsDSASQPGS 160
Cdd:PRK11034  81 TLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSS-DPGSQPNS 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 161 EEQTGGEDRMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 240
Cdd:PRK11034 160 EEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 241 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVI 320
Cdd:PRK11034 240 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVI 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 321 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYINDRHLPDKAI 400
Cdd:PRK11034 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 401 DVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKSLGDRLKMLVFGQDKAIEALTEAIKMSRA 480
Cdd:PRK11034 400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRA 479
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 481 GLGHDHKPVGSFLFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHA 560
Cdd:PRK11034 480 GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHA 559
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 561 VLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPE 640
Cdd:PRK11034 560 VLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPE 639
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 641 FRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 720
Cdd:PRK11034 640 FRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719
                        730       740       750
                 ....*....|....*....|....*....|....*....
gi 446856817 721 LLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKPEAAH 759
Cdd:PRK11034 720 LLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH 758
 
Name Accession Description Interval E-value
clpA PRK11034
ATP-dependent Clp protease ATP-binding subunit; Provisional
1-759 0e+00

ATP-dependent Clp protease ATP-binding subunit; Provisional


Pssm-ID: 236828 [Multi-domain]  Cd Length: 758  Bit Score: 1596.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   1 MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQP 80
Cdd:PRK11034   1 MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  81 TLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSsDSASQPGS 160
Cdd:PRK11034  81 TLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSS-DPGSQPNS 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 161 EEQTGGEDRMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 240
Cdd:PRK11034 160 EEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 241 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVI 320
Cdd:PRK11034 240 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVI 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 321 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYINDRHLPDKAI 400
Cdd:PRK11034 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 401 DVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKSLGDRLKMLVFGQDKAIEALTEAIKMSRA 480
Cdd:PRK11034 400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRA 479
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 481 GLGHDHKPVGSFLFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHA 560
Cdd:PRK11034 480 GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHA 559
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 561 VLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPE 640
Cdd:PRK11034 560 VLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPE 639
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 641 FRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 720
Cdd:PRK11034 640 FRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719
                        730       740       750
                 ....*....|....*....|....*....|....*....
gi 446856817 721 LLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKPEAAH 759
Cdd:PRK11034 720 LLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH 758
ClpA TIGR02639
ATP-dependent Clp protease ATP-binding subunit clpA; [Protein fate, Degradation of proteins, ...
2-736 0e+00

ATP-dependent Clp protease ATP-binding subunit clpA; [Protein fate, Degradation of proteins, peptides, and glycopeptides]


Pssm-ID: 274241 [Multi-domain]  Cd Length: 730  Bit Score: 1126.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817    2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPaSEEERDTQPT 81
Cdd:TIGR02639   1 ISEELERILSDALEEAKERRHEFVTLEHLLLALLDDNEAIEILEECGGDVELLRKRLEDYLEENLPVIP-EDIDEEPEQT 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   82 LSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEpsqSSSDSASQPGSE 161
Cdd:TIGR02639  80 VGVQRVIQRALLHVKSAGKKEIDIGDLLVALFDEEDSHASYFLKSQGITRLDILNYISHGISKDD---GKDQLGEEAGKE 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  162 EQTGgEDRMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVM 241
Cdd:TIGR02639 157 EEKG-QDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIVEGLALRIAEGKVPERL 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  242 ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIG 321
Cdd:TIGR02639 236 KNAKIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKIRCIG 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  322 STTYQEFSNIFEKDRALARRFQKIDITEPSIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYINDRHLPDKAID 401
Cdd:TIGR02639 316 STTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 395
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  402 VIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKSLGDRLKMLVFGQDKAIEALTEAIKMSRAG 481
Cdd:TIGR02639 396 VIDEAGAAFRLRPKAKKKANVNVKDIENVVAKMAKIPVKTVSSDDREQLKNLEKNLKAKIFGQDEAIDQLVSAIKRSRAG 475
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  482 LGHDHKPVGSFLFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAV 561
Cdd:TIGR02639 476 LGDPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCV 555
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  562 LLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIhQDNSTDAMEE-IKKIFTPE 640
Cdd:TIGR02639 556 LLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFG-GENRESKSLKaIKKLFSPE 634
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  641 FRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 720
Cdd:TIGR02639 635 FRNRLDAIIHFNDLSEEMAEKIVKKFLDELQDQLNEKNIELELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDE 714
                         730
                  ....*....|....*.
gi 446856817  721 LLFGSLVDGGQVTVAL 736
Cdd:TIGR02639 715 ILFGKLKKGGSVKISL 730
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
2-744 0e+00

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 853.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIEQTTPVLPASEeerdtQ 79
Cdd:COG0542    6 FTEKAQEALEAAQELARRLGHQEVEPEHLLLALLEQGEglAAKLLRKLGVDLDALREELEEALGRLPKVSGSSG-----Q 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  80 PTLS--FQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSR---LDVVNFISHGTRKDEPsqsssds 154
Cdd:COG0542   81 PYLSprLKRVLELAELEARKLGDEYISTEHLLLALLREGEGVAARILKKLGITLealREALEELRGGSRVTSQ------- 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 155 asqpGSEEQTGGedrMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 234
Cdd:COG0542  154 ----NPESKTPA---LDKYGRDLTELAREGKLDPVIGRDEEIRRVIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 235 GDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-DTNSILFIDEIHTIIGAGAASgGQVDAANLIKPLLS 313
Cdd:COG0542  227 GDVPESLKDKRVLSLDLGALVAGAKYRGEFEERLKAVLDEVKKsEGNIILFIDELHTLVGAGGAE-GAMDAANLLKPALA 305
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 314 SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYINDR 393
Cdd:COG0542  306 RGELRCIGATTLDEYRKYIEKDAALERRFQPVLVEEPSVEDTISILRGLKERYEAHHGVRITDEALVAAVRLSDRYITDR 385
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 394 HLPDKAIDVIDEAGARARLMPVSK-------------------------------------------------------- 417
Cdd:COG0542  386 FLPDKAIDLIDEAAARVRMEIDSKpeeldelerrleqleiekealkkeqdeasferlaelrdelaeleeelealkarwea 465
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 418 ------------------------------------------RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKSLGD 455
Cdd:COG0542  466 ekelieeiqelkeeleqrygkipelekelaeleeelaelaplLREEVTEEDIAEVVSRWTGIPVGKLLEGEREKLLNLEE 545
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 456 RLKMLVFGQDKAIEALTEAIKMSRAGLGHDHKPVGSFLFAGPTGVGKTEvtvqLAKAL-----GIE--LLRFDMSEYMER 528
Cdd:COG0542  546 ELHERVIGQDEAVEAVADAIRRSRAGLKDPNRPIGSFLFLGPTGVGKTE----LAKALaeflfGDEdaLIRIDMSEYMEK 621
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 529 HTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 608
Cdd:COG0542  622 HSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTIIIMTSNI 701
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 609 GVRE-TERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEA 687
Cdd:COG0542  702 GSELiLDLAEDEPDYEEMKEAVMEELKKHFRPEFLNRIDEIIVFHPLSKEELRKIVDLQLKRLRKRLAERGITLELTDAA 781
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 446856817 688 RNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTValDKEKNELT 744
Cdd:COG0542  782 KDFLAEKGYDPEYGARPLKRAIQRELEDPLAEEILAGEIKEGDTITV--DVDDGELV 836
RecA-like_ClpB_Hsp104-like cd19499
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ...
450-651 1.04e-85

Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410907 [Multi-domain]  Cd Length: 178  Bit Score: 268.66  E-value: 1.04e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 450 LKSLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHDHKPVGSFLFAGPTGVGKTEVTVQLAKAL---GIELLRFDMSEYM 526
Cdd:cd19499    2 LLNLEERLHERVVGQDEAVKAVSDAIRRARAGLSDPNRPIGSFLFLGPTGVGKTELAKALAELLfgdEDNLIRIDMSEYM 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 527 ERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 606
Cdd:cd19499   82 EKHSVSRLIGAPPGYVGYTEGGQLTEAVRRKPYSVVLLDEIEKAHPDVQNLLLQVLDDGRLTDSHGRTVDFKNTIIIMTS 161
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 446856817 607 NAgvreterksiglihqdnstdameeikkiFTPEFRNRLDNIIWF 651
Cdd:cd19499  162 NH----------------------------FRPEFLNRIDEIVVF 178
AAA_2 pfam07724
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ...
487-648 8.32e-77

AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400187 [Multi-domain]  Cd Length: 168  Bit Score: 244.80  E-value: 8.32e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  487 KPVGSFLFAGPTGVGKTEVTVQLAKALGI---ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLL 563
Cdd:pfam07724   1 RPIGSFLFLGPTGVGKTELAKALAELLFGderALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  564 LDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNST---DAMEEIKKIFTPE 640
Cdd:pfam07724  81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFIMTGNFGSEKISDASRLGDSPDYELlkeEVMDLLKKGFIPE 160

                  ....*...
gi 446856817  641 FRNRLDNI 648
Cdd:pfam07724 161 FLGRLPII 168
ClpB_D2-small smart01086
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, ...
654-743 3.94e-27

C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly. The domain is associated with two Clp_N at the N-terminus as well as AAA and AAA_2.


Pssm-ID: 198154 [Multi-domain]  Cd Length: 90  Bit Score: 105.22  E-value: 3.94e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   654 LSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVT 733
Cdd:smart01086   1 LDKEDLVRIVDLPLNALQKRLAEKGITLEFTDEALDWLAEKGYDPKYGARPLRRIIQRELEDPLAELILSGELKDGDTVV 80
                           90
                   ....*....|
gi 446856817   734 VALDKEKNEL 743
Cdd:smart01086  81 VDVDDGELVF 90
 
Name Accession Description Interval E-value
clpA PRK11034
ATP-dependent Clp protease ATP-binding subunit; Provisional
1-759 0e+00

ATP-dependent Clp protease ATP-binding subunit; Provisional


Pssm-ID: 236828 [Multi-domain]  Cd Length: 758  Bit Score: 1596.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   1 MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQP 80
Cdd:PRK11034   1 MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  81 TLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSsDSASQPGS 160
Cdd:PRK11034  81 TLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSS-DPGSQPNS 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 161 EEQTGGEDRMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 240
Cdd:PRK11034 160 EEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 241 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVI 320
Cdd:PRK11034 240 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVI 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 321 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYINDRHLPDKAI 400
Cdd:PRK11034 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 401 DVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKSLGDRLKMLVFGQDKAIEALTEAIKMSRA 480
Cdd:PRK11034 400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRA 479
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 481 GLGHDHKPVGSFLFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHA 560
Cdd:PRK11034 480 GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHA 559
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 561 VLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPE 640
Cdd:PRK11034 560 VLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPE 639
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 641 FRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 720
Cdd:PRK11034 640 FRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719
                        730       740       750
                 ....*....|....*....|....*....|....*....
gi 446856817 721 LLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKPEAAH 759
Cdd:PRK11034 720 LLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH 758
ClpA TIGR02639
ATP-dependent Clp protease ATP-binding subunit clpA; [Protein fate, Degradation of proteins, ...
2-736 0e+00

ATP-dependent Clp protease ATP-binding subunit clpA; [Protein fate, Degradation of proteins, peptides, and glycopeptides]


Pssm-ID: 274241 [Multi-domain]  Cd Length: 730  Bit Score: 1126.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817    2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPaSEEERDTQPT 81
Cdd:TIGR02639   1 ISEELERILSDALEEAKERRHEFVTLEHLLLALLDDNEAIEILEECGGDVELLRKRLEDYLEENLPVIP-EDIDEEPEQT 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   82 LSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEpsqSSSDSASQPGSE 161
Cdd:TIGR02639  80 VGVQRVIQRALLHVKSAGKKEIDIGDLLVALFDEEDSHASYFLKSQGITRLDILNYISHGISKDD---GKDQLGEEAGKE 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  162 EQTGgEDRMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVM 241
Cdd:TIGR02639 157 EEKG-QDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIVEGLALRIAEGKVPERL 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  242 ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIG 321
Cdd:TIGR02639 236 KNAKIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKIRCIG 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  322 STTYQEFSNIFEKDRALARRFQKIDITEPSIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYINDRHLPDKAID 401
Cdd:TIGR02639 316 STTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 395
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  402 VIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKSLGDRLKMLVFGQDKAIEALTEAIKMSRAG 481
Cdd:TIGR02639 396 VIDEAGAAFRLRPKAKKKANVNVKDIENVVAKMAKIPVKTVSSDDREQLKNLEKNLKAKIFGQDEAIDQLVSAIKRSRAG 475
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  482 LGHDHKPVGSFLFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAV 561
Cdd:TIGR02639 476 LGDPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCV 555
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  562 LLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIhQDNSTDAMEE-IKKIFTPE 640
Cdd:TIGR02639 556 LLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFG-GENRESKSLKaIKKLFSPE 634
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  641 FRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 720
Cdd:TIGR02639 635 FRNRLDAIIHFNDLSEEMAEKIVKKFLDELQDQLNEKNIELELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDE 714
                         730
                  ....*....|....*.
gi 446856817  721 LLFGSLVDGGQVTVAL 736
Cdd:TIGR02639 715 ILFGKLKKGGSVKISL 730
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
2-744 0e+00

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 853.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIEQTTPVLPASEeerdtQ 79
Cdd:COG0542    6 FTEKAQEALEAAQELARRLGHQEVEPEHLLLALLEQGEglAAKLLRKLGVDLDALREELEEALGRLPKVSGSSG-----Q 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  80 PTLS--FQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSR---LDVVNFISHGTRKDEPsqsssds 154
Cdd:COG0542   81 PYLSprLKRVLELAELEARKLGDEYISTEHLLLALLREGEGVAARILKKLGITLealREALEELRGGSRVTSQ------- 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 155 asqpGSEEQTGGedrMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 234
Cdd:COG0542  154 ----NPESKTPA---LDKYGRDLTELAREGKLDPVIGRDEEIRRVIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 235 GDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-DTNSILFIDEIHTIIGAGAASgGQVDAANLIKPLLS 313
Cdd:COG0542  227 GDVPESLKDKRVLSLDLGALVAGAKYRGEFEERLKAVLDEVKKsEGNIILFIDELHTLVGAGGAE-GAMDAANLLKPALA 305
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 314 SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYINDR 393
Cdd:COG0542  306 RGELRCIGATTLDEYRKYIEKDAALERRFQPVLVEEPSVEDTISILRGLKERYEAHHGVRITDEALVAAVRLSDRYITDR 385
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 394 HLPDKAIDVIDEAGARARLMPVSK-------------------------------------------------------- 417
Cdd:COG0542  386 FLPDKAIDLIDEAAARVRMEIDSKpeeldelerrleqleiekealkkeqdeasferlaelrdelaeleeelealkarwea 465
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 418 ------------------------------------------RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKSLGD 455
Cdd:COG0542  466 ekelieeiqelkeeleqrygkipelekelaeleeelaelaplLREEVTEEDIAEVVSRWTGIPVGKLLEGEREKLLNLEE 545
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 456 RLKMLVFGQDKAIEALTEAIKMSRAGLGHDHKPVGSFLFAGPTGVGKTEvtvqLAKAL-----GIE--LLRFDMSEYMER 528
Cdd:COG0542  546 ELHERVIGQDEAVEAVADAIRRSRAGLKDPNRPIGSFLFLGPTGVGKTE----LAKALaeflfGDEdaLIRIDMSEYMEK 621
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 529 HTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 608
Cdd:COG0542  622 HSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTIIIMTSNI 701
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 609 GVRE-TERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEA 687
Cdd:COG0542  702 GSELiLDLAEDEPDYEEMKEAVMEELKKHFRPEFLNRIDEIIVFHPLSKEELRKIVDLQLKRLRKRLAERGITLELTDAA 781
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 446856817 688 RNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTValDKEKNELT 744
Cdd:COG0542  782 KDFLAEKGYDPEYGARPLKRAIQRELEDPLAEEILAGEIKEGDTITV--DVDDGELV 836
chaperone_ClpB TIGR03346
ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent ...
17-740 0e+00

ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization]


Pssm-ID: 274529 [Multi-domain]  Cd Length: 850  Bit Score: 672.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   17 AREHRHEFMTVEHLLLALL--SNPSAREALEACSVDLVALRQELEAFIEQttpvLPA-SEEERDTQPTLSFQRVLQRAVF 93
Cdd:TIGR03346  16 ALGRDHQQIEPEHLLKALLdqEGGLARPLLQKAGVNVGALRQALEKELER----LPKvSGPGGQVYLSPDLNRLLNLAEK 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   94 HVQSSGRSEVTGANVLVAIfSEQESQAAYLLRKHEVSRLDVVNFIsHGTRKDEpsqsssdSASQPGSEEQtggEDRMENF 173
Cdd:TIGR03346  92 LAQKRGDEFISSEHLLLAL-LDDKGTLGKLLKEAGATADALEAAI-NAVRGGQ-------KVTDANAEDQ---YEALEKY 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  174 TTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS 253
Cdd:TIGR03346 160 ARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPEGLKNKRLLALDMGA 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  254 LLAGTKYRGDFEKRFKALLKQLE-QDTNSILFIDEIHTIIGAGAASGGqVDAANLIKPLLSSGKIRVIGSTTYQEFSNIF 332
Cdd:TIGR03346 240 LIAGAKYRGEFEERLKAVLNEVTkSEGQIILFIDELHTLVGAGKAEGA-MDAGNMLKPALARGELHCIGATTLDEYRKYI 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  333 EKDRALARRFQKIDITEPSIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYINDRHLPDKAIDVIDEAGARARL 412
Cdd:TIGR03346 319 EKDAALERRFQPVFVDEPSVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRM 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  413 ----MP-------------------------------------------------------------------------- 414
Cdd:TIGR03346 399 eidsKPeeldeldrriiqleierealkkekdeaskkrledlekeladleeeyaeleeqwkaekasiqgiqqikeeieqvr 478
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  415 ----VSKR-------------------------------------KKTVNVADIESVVARIARIPEKSVSQSDRDTLKSL 453
Cdd:TIGR03346 479 leleQAERegdlakaaelqygklpelekqlqaaeqklgeeqnrllREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHM 558
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  454 GDRLKMLVFGQDKAIEALTEAIKMSRAGLGHDHKPVGSFLFAGPTGVGKTEvtvqLAKALGIEL-------LRFDMSEYM 526
Cdd:TIGR03346 559 EEELHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTE----LAKALAEFLfdsedamVRIDMSEYM 634
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  527 ERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 606
Cdd:TIGR03346 635 EKHSVARLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 714
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  607 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQE 686
Cdd:TIGR03346 715 NLGSDFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDA 794
                         810       820       830       840       850
                  ....*....|....*....|....*....|....*....|....*....|....
gi 446856817  687 ARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEK 740
Cdd:TIGR03346 795 ALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVAPGDTIRVDVEGGR 848
clpC CHL00095
Clp protease ATP binding subunit
1-741 0e+00

Clp protease ATP binding subunit


Pssm-ID: 214361 [Multi-domain]  Cd Length: 821  Bit Score: 669.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   1 MLNQELelslnmafarAREHRHEFMTVEHLLLALL--SNPSAREALEACSVDLVALRQELEAFIEQTTPVLpASEeerdT 78
Cdd:CHL00095  14 MLSQEE----------ARRLGHNFVGTEQILLGLIgeGTGIAARALKSMGVTLKDARIEVEKIIGRGTGFV-AVE----I 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  79 QPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVS----RLDVVNFIShgtrkdepsqssSDS 154
Cdd:CHL00095  79 PFTPRAKRVLEMSLEEARDLGHNYIGTEHLLLALLEEGEGVAARVLENLGVDlskiRSLILNLIG------------EII 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 155 ASQPGSEEQTGGEDRMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 234
Cdd:CHL00095 147 EAILGAEQSRSKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVN 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 235 GDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGqVDAANLIKPLLSS 314
Cdd:CHL00095 227 RDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-IDAANILKPALAR 305
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 315 GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYINDRH 394
Cdd:CHL00095 306 GELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRF 385
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 395 LPDKAIDVIDEAGARARLM-----------------------------------------------------------PV 415
Cdd:CHL00095 386 LPDKAIDLLDEAGSRVRLInsrlppaareldkelreilkdkdeaireqdfetakqlrdremevraqiaaiiqskkteeEK 465
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 416 SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKSLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHDHKPVGSFLFA 495
Cdd:CHL00095 466 RLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFS 545
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 496 GPTGVGKTEVTVQLAKAL-GIE--LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP 572
Cdd:CHL00095 546 GPTGVGKTELTKALASYFfGSEdaMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP 625
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 573 DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG--VRETERKSIGLIHQDNSTD----------AMEEIKKIFTPE 640
Cdd:CHL00095 626 DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGskVIETNSGGLGFELSENQLSekqykrlsnlVNEELKQFFRPE 705
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 641 FRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 720
Cdd:CHL00095 706 FLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEE 785
                        810       820
                 ....*....|....*....|.
gi 446856817 721 LLFGSLVDGGQVTVALDKEKN 741
Cdd:CHL00095 786 VLSFKIKPGDIIIVDVNDEKE 806
PRK10865 PRK10865
ATP-dependent chaperone ClpB;
2-739 8.43e-180

ATP-dependent chaperone ClpB;


Pssm-ID: 182791 [Multi-domain]  Cd Length: 857  Bit Score: 536.35  E-value: 8.43e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAFIEQttpvLPASE-EERDT 78
Cdd:PRK10865   6 LTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEggSVRPLLTSAGINAGQLRTDINQALSR----LPQVEgTGGDV 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  79 QPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFsEQESQAAYLLRKHEVSRLDVVNFISHgTRKDEpsqsssdSASQP 158
Cdd:PRK10865  82 QPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQ-MRGGE-------SVNDQ 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 159 GSEEQtggEDRMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVP 238
Cdd:PRK10865 153 GAEDQ---RQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 239 EVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL-EQDTNSILFIDEIHTIIGAGAASGGqVDAANLIKPLLSSGKI 317
Cdd:PRK10865 230 EGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLaKQEGNVILFIDELHTMVGAGKADGA-MDAGNMLKPALARGEL 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 318 RVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYINDRHLPD 397
Cdd:PRK10865 309 HCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPD 388
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 398 KAIDVIDEAGARARLMPVSK---------------------RKKT----------------------------------- 421
Cdd:PRK10865 389 KAIDLIDEAASSIRMQIDSKpeeldrldrriiqlkleqqalMKESdeaskkrldmlneelsdkerqyseleeewkaekas 468
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 422 --------------------------------------------------------------VNVADIESVVARIARIPE 439
Cdd:PRK10865 469 lsgtqtikaeleqakiaieqarrvgdlarmselqygkipelekqlaaatqlegktmrllrnkVTDAEIAEVLARWTGIPV 548
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 440 KSVSQSDRDTLKSLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHDHKPVGSFLFAGPTGVGKTEVTVQLAKAL---GIE 516
Cdd:PRK10865 549 SRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMfdsDDA 628
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 517 LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKAD 596
Cdd:PRK10865 629 MVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVD 708
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 597 FRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQ 676
Cdd:PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEE 788
                        810       820       830       840       850       860
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446856817 677 KGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKE 739
Cdd:PRK10865 789 RGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNDD 851
VI_ClpV1 TIGR03345
type VI secretion ATPase, ClpV1 family; Members of this protein family are homologs of ClpB, ...
2-722 1.28e-178

type VI secretion ATPase, ClpV1 family; Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274528 [Multi-domain]  Cd Length: 852  Bit Score: 532.98  E-value: 1.28e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817    2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIEQttpvLPASEEERdtq 79
Cdd:TIGR03345   1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDsdLAAILRHFGVDLGRLKADLARALDK----LPRGNTRT--- 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   80 PTLS--FQRVLQRAvFHVQSS--GRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISH---GTRKDEPSQSSS 152
Cdd:TIGR03345  74 PVFSphLVELLQEA-WLLASLelGDGRIRSGHLLLALLTDPELRRLLGSISPELAKIDREALREAlpaLVEGSAEASAAA 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  153 DSASQPGSEEQTGGEDRMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 232
Cdd:TIGR03345 153 ADAAPAGAAAGAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  233 VQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-DTNSILFIDEIHTIIGAGAASgGQVDAANLIKPL 311
Cdd:TIGR03345 233 AAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKAsPQPIILFIDEAHTLIGAGGQA-GQGDAANLLKPA 311
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  312 LSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYIN 391
Cdd:TIGR03345 312 LARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  392 DRHLPDKAIDVIDEAGARARL----------------------------------------------------------- 412
Cdd:TIGR03345 392 GRQLPDKAVSLLDTACARVALsqnatpaaledlrrriaaleleldalereaalgadhderlaelraelaaleaelaalea 471
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  413 ------------------------MPVSKRKKT------------------------VNVADIESVVARIARIPEKSVSQ 444
Cdd:TIGR03345 472 rwqqekelveailalraeleadadAPADDDDALraqlaeleaalasaqgeeplvfpeVDAQAVAEVVADWTGIPVGRMVR 551
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  445 SDRDTLKSLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHDHKPVGSFLFAGPTGVGKTEVTVQLAKAL-GIE--LLRFD 521
Cdd:TIGR03345 552 DEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLyGGEqnLITIN 631
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  522 MSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVV 601
Cdd:TIGR03345 632 MSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTV 711
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  602 LVMTTNAGVRETERKSIGLiHQDNSTDAMEE-----IKKIFTPEFRNRLdNIIWFDHLSTDVIHQVVDKFIVELQVQL-D 675
Cdd:TIGR03345 712 ILLTSNAGSDLIMALCADP-ETAPDPEALLEalrpeLLKVFKPAFLGRM-TVIPYLPLDDDVLAAIVRLKLDRIARRLkE 789
                         810       820       830       840
                  ....*....|....*....|....*....|....*....|....*..
gi 446856817  676 QKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 722
Cdd:TIGR03345 790 NHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQIL 836
RecA-like_ClpB_Hsp104-like cd19499
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ...
450-651 1.04e-85

Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410907 [Multi-domain]  Cd Length: 178  Bit Score: 268.66  E-value: 1.04e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 450 LKSLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHDHKPVGSFLFAGPTGVGKTEVTVQLAKAL---GIELLRFDMSEYM 526
Cdd:cd19499    2 LLNLEERLHERVVGQDEAVKAVSDAIRRARAGLSDPNRPIGSFLFLGPTGVGKTELAKALAELLfgdEDNLIRIDMSEYM 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 527 ERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 606
Cdd:cd19499   82 EKHSVSRLIGAPPGYVGYTEGGQLTEAVRRKPYSVVLLDEIEKAHPDVQNLLLQVLDDGRLTDSHGRTVDFKNTIIIMTS 161
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 446856817 607 NAgvreterksiglihqdnstdameeikkiFTPEFRNRLDNIIWF 651
Cdd:cd19499  162 NH----------------------------FRPEFLNRIDEIVVF 178
AAA_2 pfam07724
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ...
487-648 8.32e-77

AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400187 [Multi-domain]  Cd Length: 168  Bit Score: 244.80  E-value: 8.32e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  487 KPVGSFLFAGPTGVGKTEVTVQLAKALGI---ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLL 563
Cdd:pfam07724   1 RPIGSFLFLGPTGVGKTELAKALAELLFGderALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  564 LDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNST---DAMEEIKKIFTPE 640
Cdd:pfam07724  81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFIMTGNFGSEKISDASRLGDSPDYELlkeEVMDLLKKGFIPE 160

                  ....*...
gi 446856817  641 FRNRLDNI 648
Cdd:pfam07724 161 FLGRLPII 168
AAA_lid_9 pfam17871
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ...
351-453 3.92e-37

AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.


Pssm-ID: 465544 [Multi-domain]  Cd Length: 104  Bit Score: 134.15  E-value: 3.92e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  351 SIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYINDRHLPDKAIDVIDEAGARARLmpvSKRKKTVNVADIESV 430
Cdd:pfam17871   1 SVEEAIEILRGLKPKYEKHHGVRISDEALEAAVKLSKRYITDRFLPDKAIDLLDEACARVRL---SQESKPEELEDLERE 77
                          90       100
                  ....*....|....*....|...
gi 446856817  431 VARIARIPEKSVSQSDRDTLKSL 453
Cdd:pfam17871  78 LAKLEIEKEALEREQDFEKAERL 100
ClpB_D2-small pfam10431
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, ...
654-734 9.30e-29

C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerization, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.


Pssm-ID: 463090 [Multi-domain]  Cd Length: 81  Bit Score: 109.80  E-value: 9.30e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  654 LSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVT 733
Cdd:pfam10431   1 LSKEELRKIVDLQLKELQKRLAERGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQREIEDPLAEEILSGELKEGDTVR 80

                  .
gi 446856817  734 V 734
Cdd:pfam10431  81 V 81
ClpB_D2-small smart01086
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, ...
654-743 3.94e-27

C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly. The domain is associated with two Clp_N at the N-terminus as well as AAA and AAA_2.


Pssm-ID: 198154 [Multi-domain]  Cd Length: 90  Bit Score: 105.22  E-value: 3.94e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   654 LSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVT 733
Cdd:smart01086   1 LDKEDLVRIVDLPLNALQKRLAEKGITLEFTDEALDWLAEKGYDPKYGARPLRRIIQRELEDPLAELILSGELKDGDTVV 80
                           90
                   ....*....|
gi 446856817   734 VALDKEKNEL 743
Cdd:smart01086  81 VDVDDGELVF 90
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
190-345 8.02e-22

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 92.59  E-value: 8.02e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 190 IGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPevmadctIYSLDIGSLLAGTKYRGDFE-KRF 268
Cdd:cd00009    1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAP-------FLYLNASDLLEGLVVAELFGhFLV 73
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446856817 269 KALLKQLEQDTNSILFIDEIHTIigAGAASGGQVDAAN-LIKPLLSSGKIRVIGSTTYqefSNIFEKDRALARRFQKI 345
Cdd:cd00009   74 RLLFELAEKAKPGVLFIDEIDSL--SRGAQNALLRVLEtLNDLRIDRENVRVIGATNR---PLLGDLDRALYDRLDIR 146
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
212-345 3.04e-16

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 75.71  E-value: 3.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  212 LLVGESGVGKTAIAEGLAWrivqgdvpevMADCTIYSLDIGSLLAgtKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTI 291
Cdd:pfam00004   2 LLYGPPGTGKTTLAKAVAK----------ELGAPFIEISGSELVS--KYVGESEKRLRELFEAAKKLAPCVIFIDEIDAL 69
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446856817  292 IGAGAASGGQV--DAANLIKPLL-----SSGKIRVIGSTTYqefsnIFEKDRALARRFQKI 345
Cdd:pfam00004  70 AGSRGSGGDSEsrRVVNQLLTELdgftsSNSKVIVIAATNR-----PDKLDPALLGRFDRI 125
SpoVK COG0464
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ...
17-388 3.74e-16

AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 440232 [Multi-domain]  Cd Length: 397  Bit Score: 81.11  E-value: 3.74e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  17 AREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQ 96
Cdd:COG0464    1 LAELLALAVALALALLLLDDAALRLLLLLLLALAAALLLLLLLLLLLLLALLLVELLLLLLSGALAALLLLALLLLALLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  97 SSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSSDSASQPGSEEQTGGEDRMEnfttn 176
Cdd:COG0464   81 LLAALLSALELLLLGELLLLLLLLLLLLLLLLDLERALLELLRESAEALALAAPLVTYEDIGGLEEELLELREAI----- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 177 lnqLARVGGIDPLIGREKELERAIQVLCRRRKNNP-------LLVGESGVGKTAIAEGLAwRIVQGDVpevmadctiYSL 249
Cdd:COG0464  156 ---LDDLGGLEEVKEELRELVALPLKRPELREEYGlppprglLLYGPPGTGKTLLARALA-GELGLPL---------IEV 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 250 DIGSLLAgtKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDA----------ANLIKPLLssgkirV 319
Cdd:COG0464  223 DLSDLVS--KYVGETEKNLREVFDKARGLAPCVLFIDEADALAGKRGEVGDGVGRrvvntlltemEELRSDVV------V 294
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 320 IGsTTYQeFSNIfekDRALARRFQ-KIDITEPSIDETVQIINGLKPKYEAHHDV----------RYTAKAIRAAVELAVK 388
Cdd:COG0464  295 IA-ATNR-PDLL---DPALLRRFDeIIFFPLPDAEERLEIFRIHLRKRPLDEDVdleelaeateGLSGADIRNVVRRAAL 369
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
462-618 2.57e-13

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 67.94  E-value: 2.57e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 462 FGQDKAIEALTEAIKmsraglghdHKPVGSFLFAGPTGVGKTEVTVQLAKAL---GIELLRFDMSEYMERHTVSRLIgap 538
Cdd:cd00009    1 VGQEEAIEALREALE---------LPPPKNLLLYGPPGTGKTTLARAIANELfrpGAPFLYLNASDLLEGLVVAELF--- 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 539 pgyvGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGtltdnNGRKADFRNVVLVMTTNAGVRETERKSI 618
Cdd:cd00009   69 ----GHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETL-----NDLRIDRENVRVIGATNRPLLGDLDRAL 139
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
491-607 4.80e-13

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 66.93  E-value: 4.80e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  491 SFLFAGPTGVGKTEVTVQLAKAL-GIELLRFDMSEYMerhTVSRLIGappGYVGFDQGGLLTDAVI----KHPHaVLLLD 565
Cdd:pfam07728   1 GVLLVGPPGTGKTELAERLAAALsNRPVFYVQLTRDT---TEEDLFG---RRNIDPGGASWVDGPLvraaREGE-IAVLD 73
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 446856817  566 EIEKAHPDVFNILLQVMDNGTLTDNNGR---KADFRNVVLVMTTN 607
Cdd:pfam07728  74 EINRANPDVLNSLLSLLDERRLLLPDGGelvKAAPDGFRLIATMN 118
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
207-345 3.76e-12

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 64.70  E-value: 3.76e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   207 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL-----AGTKYRGDFEKRFKALLKQLEQDTNS 281
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLlliivGGKKASGSGELRLRLALALARKLKPD 80
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446856817   282 ILFIDEIHTIIGAGAASGGQVDA-ANLIKPLLSSGKIRVIGSTTYQEFSnifeKDRALARRFQKI 345
Cdd:smart00382  81 VLILDEITSLLDAEQEALLLLLEeLRLLLLLKSEKNLTVILTTNDEKDL----GPALLRRRFDRR 141
Clp_N pfam02861
Clp amino terminal domain, pathogenicity island component; This short domain is found in one ...
13-63 1.49e-11

Clp amino terminal domain, pathogenicity island component; This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site. In many bacterial species, including E.coli, this region represents the N-terminus of one of the key components of the pathogenicity island complex that injects toxin from one bacterium into another.


Pssm-ID: 460724 [Multi-domain]  Cd Length: 53  Bit Score: 59.84  E-value: 1.49e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 446856817   13 AFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIE 63
Cdd:pfam02861   1 AQELARALGHQYIGTEHLLLALLEEDDglAARLLKKAGVDLDALREAIEKLLG 53
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
212-345 2.63e-10

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 59.60  E-value: 2.63e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 212 LLVGESGVGKTAIAEGLAwrivqgdvpeVMADCTIYSLDIGSLLagTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTI 291
Cdd:cd19481   30 LLYGPPGTGKTLLAKALA----------GELGLPLIVVKLSSLL--SKYVGESEKNLRKIFERARRLAPCILFIDEIDAI 97
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446856817 292 IGAGAASGGQVDAA-------NLIKPLLSSGKIRVIGSTtyqefSNIFEKDRALAR--RFQKI 345
Cdd:cd19481   98 GRKRDSSGESGELRrvlnqllTELDGVNSRSKVLVIAAT-----NRPDLLDPALLRpgRFDEV 155
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
467-607 6.80e-10

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 58.45  E-value: 6.80e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 467 AIEALTEAIKMSRAGLGhdhkPVGSFLFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTvsrligappGYVGfDQ 546
Cdd:cd19481    8 AVEAPRRGSRLRRYGLG----LPKGILLYGPPGTGKTLLAKALAGELGLPLIVVKLSSLLSKYV---------GESE-KN 73
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446856817 547 GGLLTDAVIKHPHAVLLLDEIEKAHPD------------VFNILLQVMDNGTLTDnngrkadfrNVVLVMTTN 607
Cdd:cd19481   74 LRKIFERARRLAPCILFIDEIDAIGRKrdssgesgelrrVLNQLLTELDGVNSRS---------KVLVIAATN 137
COG1223 COG1223
Predicted ATPase, AAA+ superfamily [General function prediction only];
187-405 1.25e-09

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 440836 [Multi-domain]  Cd Length: 246  Bit Score: 59.51  E-value: 1.25e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 187 DPLIGRE---KELERAIQVLCRRRK---------NNPLLVGESGVGKTAIAEGLAWRIvqgDVPevmadctIYSLDIGSL 254
Cdd:COG1223    2 DDVVGQEeakKKLKLIIKELRRRENlrkfglwppRKILFYGPPGTGKTMLAEALAGEL---KLP-------LLTVRLDSL 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 255 LagTKYRGDFEKRFKALLKQLEQdTNSILFIDEIHTIigagaasGGQVDAANL---IKPLLSS---------GKIRVIGS 322
Cdd:COG1223   72 I--GSYLGETARNLRKLFDFARR-APCVIFFDEFDAI-------AKDRGDQNDvgeVKRVVNAllqeldglpSGSVVIAA 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 323 TTYQEFSnifekDRALARRFQ-KIDITEPSIDETVQI----INGLKPKYEAHHD--------------VRYTAKAIRAAV 383
Cdd:COG1223  142 TNHPELL-----DSALWRRFDeVIEFPLPDKEERKEIlelnLKKFPLPFELDLKklakkleglsgadiEKVLKTALKKAI 216
                        250       260
                 ....*....|....*....|..
gi 446856817 384 ELAVKYINDRHLpDKAIDVIDE 405
Cdd:COG1223  217 LEDREKVTKEDL-EEALKQRKE 237
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
493-652 2.25e-09

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 56.06  E-value: 2.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  493 LFAGPTGVGKTEVTVQLAKALGIELLRFDMSEymerhTVSRLIGAPPGYVgfdqGGLLTDAVIKHPHaVLLLDEIEKAHP 572
Cdd:pfam00004   2 LLYGPPGTGKTTLAKAVAKELGAPFIEISGSE-----LVSKYVGESEKRL----RELFEAAKKLAPC-VIFIDEIDALAG 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  573 -----------DVFNILLQVMDngtltdnnGRKADFRNVVLVMTTNagvreterkSIGLIhqdnstdameeikkifTPEF 641
Cdd:pfam00004  72 srgsggdsesrRVVNQLLTELD--------GFTSSNSKVIVIAATN---------RPDKL----------------DPAL 118
                         170
                  ....*....|.
gi 446856817  642 RNRLDNIIWFD 652
Cdd:pfam00004 119 LGRFDRIIEFP 129
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
493-607 4.73e-08

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 52.76  E-value: 4.73e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   493 LFAGPTGVGKTEVTVQLAKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGG----LLTDAVIKHPHAVLLLD 565
Cdd:smart00382   6 LIVGPPGSGKTTLARALARELgppGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGElrlrLALALARKLKPDVLILD 85
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 446856817   566 EIEKAHPDVFNILLQVMDNGTLTDNNGRKadfRNVVLVMTTN 607
Cdd:smart00382  86 EITSLLDAEQEALLLLLEELRLLLLLKSE---KNLTVILTTN 124
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
212-441 6.42e-08

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 55.01  E-value: 6.42e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 212 LLVGESGVGKTAIAEGLAWRivqgdvpevmADCTIYSLDIGSLLagTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTI 291
Cdd:COG1222  116 LLYGPPGTGKTLLAKAVAGE----------LGAPFIRVRGSELV--SKYIGEGARNVREVFELAREKAPSIIFIDEIDAI 183
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 292 IGA--GAASGGQVDaaNLIKPLL-------SSGKIRVIGSTTYQEfsnifEKDRALAR--RF-QKIDITEPSIDETVQII 359
Cdd:COG1222  184 AARrtDDGTSGEVQ--RTVNQLLaeldgfeSRGDVLIIAATNRPD-----LLDPALLRpgRFdRVIEVPLPDEEAREEIL 256
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 360 NGLKPKYEAHHDVRYTAKAIRA----AVELAVkyindrhlpdkaidVIDEAGARArlmpVSKRKKTVNVADIESVVARIA 435
Cdd:COG1222  257 KIHLRDMPLADDVDLDKLAKLTegfsGADLKA--------------IVTEAGMFA----IREGRDTVTMEDLEKAIEKVK 318

                 ....*.
gi 446856817 436 RIPEKS 441
Cdd:COG1222  319 KKTETA 324
RecA-like_VPS4-like cd19509
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ...
212-344 8.09e-08

ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410917 [Multi-domain]  Cd Length: 163  Bit Score: 52.35  E-value: 8.09e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 212 LLVGESGVGKTAIAEGLAWRIvqgdvpevmaDCTIYSLDIGSLLAgtKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTI 291
Cdd:cd19509   36 LLYGPPGTGKTLLARAVASES----------GSTFFSISASSLVS--KWVGESEKIVRALFALARELQPSIIFIDEIDSL 103
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446856817 292 IgaGAASGGQVDAANLIKPLL----------SSGKIRVIGSTtyqefSNIFEKDRALARRFQK 344
Cdd:cd19509  104 L--SERGSGEHEASRRVKTEFlvqmdgvlnkPEDRVLVLGAT-----NRPWELDEAFLRRFEK 159
RecA-like_VPS4 cd19521
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein ...
212-344 1.00e-07

ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein sorting-associated protein 4 (Vps4) is believed to be involved in intracellular protein transport out of a prevacuolar endosomal compartment. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410929 [Multi-domain]  Cd Length: 170  Bit Score: 52.56  E-value: 1.00e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 212 LLVGESGVGKTAIAEGLAwrivqgdvpeVMADCTIYSLDIGSLLagTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTI 291
Cdd:cd19521   44 LLYGPPGTGKSYLAKAVA----------TEANSTFFSVSSSDLV--SKWMGESEKLVKQLFAMARENKPSIIFIDEVDSL 111
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446856817 292 igAGAASGGQVDAANLIKPLL---------SSGKIRVIGSTtyqefsNI-FEKDRALARRFQK 344
Cdd:cd19521  112 --CGTRGEGESEASRRIKTELlvqmngvgnDSQGVLVLGAT------NIpWQLDSAIRRRFEK 166
CDC48 TIGR01243
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ...
212-516 2.69e-07

AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.


Pssm-ID: 273521 [Multi-domain]  Cd Length: 733  Bit Score: 54.14  E-value: 2.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  212 LLVGESGVGKTAIAEGLAWRI----VQGDVPEVMadctiysldigsllagTKYRGDFEKRFKALLKQLEQDTNSILFIDE 287
Cdd:TIGR01243 216 LLYGPPGTGKTLLAKAVANEAgayfISINGPEIM----------------SKYYGESEERLREIFKEAEENAPSIIFIDE 279
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  288 IHTIIGAGAASGGQVDAA------NLIKPLLSSGKIRVIGSTTYQEfsnifEKDRALAR--RFQK-IDITEPSIDETVQI 358
Cdd:TIGR01243 280 IDAIAPKREEVTGEVEKRvvaqllTLMDGLKGRGRVIVIGATNRPD-----ALDPALRRpgRFDReIVIRVPDKRARKEI 354
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  359 INGLKPKYEAHHDVR----------YTAKAIRAAVELAVKYINDRHLPDKAIDVIDEAGARARL--MPVSKRKKTVNVAD 426
Cdd:TIGR01243 355 LKVHTRNMPLAEDVDldklaevthgFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLkeLKVTMKDFMEALKM 434
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  427 IESVVARIARIPEKSVSQSDRDTLKSLGDRLKMLVFGQDKAIEALteaikmSRAGLghdHKPVGSFLFaGPTGVGKTevt 506
Cdd:TIGR01243 435 VEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIF------EKMGI---RPPKGVLLF-GPPGTGKT--- 501
                         330
                  ....*....|
gi 446856817  507 vQLAKALGIE 516
Cdd:TIGR01243 502 -LLAKAVATE 510
SpoVK COG0464
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ...
335-683 3.03e-07

AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 440232 [Multi-domain]  Cd Length: 397  Bit Score: 53.38  E-value: 3.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 335 DRALARRFQKIDITEPSIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMP 414
Cdd:COG0464   29 LLLALAAALLLLLLLLLLLLLALLLVELLLLLLSGALAALLLLALLLLALLALLAALLSALELLLLGELLLLLLLLLLLL 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 415 VSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKSLGDRLKMLVF----GQDKAIEALTEAIK--------MSRAGL 482
Cdd:COG0464  109 LLLLDLERALLELLRESAEALALAAPLVTYEDIGGLEEELLELREAILddlgGLEEVKEELRELVAlplkrpelREEYGL 188
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 483 ghdhKPVGSFLFAGPTGVGKTEVTVQLAKALGIELLRFDMSEymerhtvsrLIGappGYVG---------FDQgglltda 553
Cdd:COG0464  189 ----PPPRGLLLYGPPGTGKTLLARALAGELGLPLIEVDLSD---------LVS---KYVGeteknlrevFDK------- 245
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 554 VIKHPHAVLLLDEIEKAHPD-----------VFNILLQVMDNGTltdnngrkadfRNVVLVMTTNagvreterksigliH 622
Cdd:COG0464  246 ARGLAPCVLFIDEADALAGKrgevgdgvgrrVVNTLLTEMEELR-----------SDVVVIAATN--------------R 300
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446856817 623 QDNStDameeikkiftPEFRNRLDNIIWFDHLSTDVIHQVvdkfiveLQVQLDQKGVSLEV 683
Cdd:COG0464  301 PDLL-D----------PALLRRFDEIIFFPLPDAEERLEI-------FRIHLRKRPLDEDV 343
RecA-like_KTNA1 cd19522
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is ...
205-344 5.67e-06

Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is the catalytic subunit of the Katanin complex which is severs microtubules in an ATP-dependent manner, and is implicated in multiple aspects of microtubule dynamics. In addition to the p60 catalytic ATPase subunit, Katanin contains an accessory subunit (p80 or p80-like). The microtubule-severing activity of the ATPase is essential for female meiotic spindle assembly, and male gamete production; and the katanin complex severing microtubules is under tight regulation during the transition from the meiotic to mitotic stage to allow proper embryogenesis. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410930 [Multi-domain]  Cd Length: 170  Bit Score: 47.29  E-value: 5.67e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 205 RRRKNNPLLVGESGVGKTAIAEGLAwrivqgdvpevmADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILF 284
Cdd:cd19522   30 RRPWKGVLMVGPPGTGKTLLAKAVA------------TECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIF 97
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 285 IDEIHTIIGAgAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNI----------FEKDRALARRFQK 344
Cdd:cd19522   98 IDEIDSICSR-RGTSEEHEASRRVKSELLVQMDGVGGASENDDPSKMvmvlaatnfpWDIDEALRRRLEK 166
DnaX COG2812
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
461-513 5.80e-06

DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];


Pssm-ID: 442061 [Multi-domain]  Cd Length: 340  Bit Score: 49.03  E-value: 5.80e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 446856817 461 VFGQDKAIEALTEAIKMSRagLGHdhkpvgSFLFAGPTGVGKTEVTVQLAKAL 513
Cdd:COG2812   12 VVGQEHVVRTLKNALASGR--LAH------AYLFTGPRGVGKTTLARILAKAL 56
RecA-like_Lon cd19500
lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an ...
493-607 9.63e-06

lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an evolutionarily conserved ATP-dependent serine protease, present in bacteria and eukaryotic mitochondria and peroxisomes, which mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Lon protease is both an ATP-dependent peptidase and a protein-activated ATPase. This RecA-like Lon domain subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410908 [Multi-domain]  Cd Length: 182  Bit Score: 46.78  E-value: 9.63e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 493 LFAGPTGVGKTEVTVQLAKALGIELLRF------DMSEYM-ERHTvsrLIGAPPGYVgfDQGglLTDAVIKHPhaVLLLD 565
Cdd:cd19500   41 CLVGPPGVGKTSLGKSIARALGRKFVRIslggvrDEAEIRgHRRT---YVGAMPGRI--IQA--LKKAGTNNP--VFLLD 111
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 446856817 566 EIEK----AHPDVFNILLQVMD---NGTLTDNN-GRKADFRNVVLVMTTN 607
Cdd:cd19500  112 EIDKigssFRGDPASALLEVLDpeqNSTFSDHYlDVPFDLSKVLFIATAN 161
RecA-like_CDC48_NLV2_r1-like cd19503
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ...
183-323 2.19e-05

first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410911 [Multi-domain]  Cd Length: 165  Bit Score: 45.36  E-value: 2.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 183 VGGIDPLIGREKEL----------ERAIQVLCRRrknNPLLVGESGVGKTAIAEGLAWRivqgdvpevmADCTIYSLDIG 252
Cdd:cd19503    2 IGGLDEQIASLKELielplkypelFRALGLKPPR---GVLLHGPPGTGKTLLARAVANE----------AGANFLSISGP 68
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446856817 253 SLLAgtKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAA------NLIKPLLSSGKIRVIGST 323
Cdd:cd19503   69 SIVS--KYLGESEKNLREIFEEARSHAPSIIFIDEIDALAPKREEDQREVERRvvaqllTLMDGMSSRGKVVVIAAT 143
AAA_16 pfam13191
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
188-247 3.32e-05

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433025 [Multi-domain]  Cd Length: 167  Bit Score: 44.80  E-value: 3.32e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446856817  188 PLIGREKELERAIQVLCRRRKNNP---LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 247
Cdd:pfam13191   1 RLVGREEELEQLLDALDRVRSGRPpsvLLTGEAGTGKTTLLRELLRALERDGGYFLRGKCDEN 63
RecA-like_CDC48_r1-like cd19519
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP ...
212-346 4.64e-05

first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r1-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410927 [Multi-domain]  Cd Length: 166  Bit Score: 44.35  E-value: 4.64e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 212 LLVGESGVGKTAIAEGLA------WRIVQGdvPEVMadctiysldigsllagTKYRGDFEKRFKALLKQLEQDTNSILFI 285
Cdd:cd19519   38 LLYGPPGTGKTLIARAVAnetgafFFLING--PEIM----------------SKLAGESESNLRKAFEEAEKNAPAIIFI 99
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446856817 286 DEIHTIIGAGAASGGQVDAA------NLIKPLLSSGKIRVIGSTtyqefSNIFEKDRALaRRFQKID 346
Cdd:cd19519  100 DEIDAIAPKREKTHGEVERRivsqllTLMDGLKQRAHVIVMAAT-----NRPNSIDPAL-RRFGRFD 160
RecA-like_ClpX cd19497
ATP-dependent Clp protease ATP-binding subunit ClpX; ClpX is a component of the ATP-dependent ...
208-291 9.17e-05

ATP-dependent Clp protease ATP-binding subunit ClpX; ClpX is a component of the ATP-dependent protease ClpXP. In ClpXP, ClpX ATPase serves to specifically recognize, unfold, and translocate protein substrates into the chamber of ClpP protease for degradation. This RecA-like_ClpX domain subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410905 [Multi-domain]  Cd Length: 251  Bit Score: 44.90  E-value: 9.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 208 KNNPLLVGESGVGKTAIAEGLAwRIVqgDVPEVMADCTiysldigSLL-AGtkYRG-DFEKRFKALLK----QLEQDTNS 281
Cdd:cd19497   50 KSNILLIGPTGSGKTLLAQTLA-KIL--DVPFAIADAT-------TLTeAG--YVGeDVENILLKLLQaadyDVERAQRG 117
                         90
                 ....*....|
gi 446856817 282 ILFIDEIHTI 291
Cdd:cd19497  118 IVYIDEIDKI 127
RecA-like_Ycf46-like cd19507
ATPase domain of Ycf46 and similar ATPase domains; Ycf46 may play a role in the regulation of ...
212-300 1.47e-04

ATPase domain of Ycf46 and similar ATPase domains; Ycf46 may play a role in the regulation of photosynthesis in cyanobacteria, especially in CO2 uptake and utilization. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410915 [Multi-domain]  Cd Length: 161  Bit Score: 42.74  E-value: 1.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 212 LLVGESGVGKTAIAEGLA--WRIvqgdvpevmadcTIYSLDIGSLLAGtkYRGDFEKRFKALLKQLEQDTNSILFIDEIH 289
Cdd:cd19507   35 LLVGIQGTGKSLTAKAIAgvWQL------------PLLRLDMGRLFGG--LVGESESRLRQMIQTAEAIAPCVLWIDEIE 100
                         90
                 ....*....|.
gi 446856817 290 TIIGaGAASGG 300
Cdd:cd19507  101 KGFS-NADSKG 110
DNA_pol3_delta2 pfam13177
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ...
463-513 2.73e-04

DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.


Pssm-ID: 433013 [Multi-domain]  Cd Length: 161  Bit Score: 42.20  E-value: 2.73e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 446856817  463 GQDKAIEALTEAIKMSRagLGHdhkpvgSFLFAGPTGVGKTEVTVQLAKAL 513
Cdd:pfam13177   1 GQPEAIQLLQNSLENGR--LSH------AYLFSGPEGVGKLELALAFAKAL 43
RecA-like_Figl-1 cd19525
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; ...
212-344 4.19e-04

ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; it may be involved in DNA double-strand break repair via homologous recombination. Caenorhabditis elegans FIGL-1 is a nuclear protein and controls the mitotic progression in the germ line and mouse FIGL-1 may be involved in the control of male meiosis. human FIGL-1 has been shown to be a centrosome protein involved in ciliogenesis perhaps as a microtubule-severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410933 [Multi-domain]  Cd Length: 186  Bit Score: 41.90  E-value: 4.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 212 LLVGESGVGKTAIAEGLAWRivqgdvpevmADCTIYSLDIGSLLagTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTI 291
Cdd:cd19525   59 LLFGPPGTGKTLIGKCIASQ----------SGATFFSISASSLT--SKWVGEGEKMVRALFSVARCKQPAVIFIDEIDSL 126
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446856817 292 IgaGAASGGQVDAANLIKPLL----------SSGKIRVIGSTTYQEfsnifEKDRALARRFQK 344
Cdd:cd19525  127 L--SQRGEGEHESSRRIKTEFlvqldgattsSEDRILVVGATNRPQ-----EIDEAARRRLVK 182
RecA-like_HslU cd19498
ATP-dependent protease ATPase subunit HslU; HslU is a component of the ATP-dependent protease ...
493-569 4.84e-04

ATP-dependent protease ATPase subunit HslU; HslU is a component of the ATP-dependent protease HslVU. In HslVU, HslU ATPase serves to unfold and translocate protein substrate, and the HslV protease degrades the unfolded proteins. This RecA-like_HslU subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410906 [Multi-domain]  Cd Length: 183  Bit Score: 41.60  E-value: 4.84e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446856817 493 LFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMErhtvsrligapPGYVGFDQGGLLTDAVikhpHAVLLLDEIEK 569
Cdd:cd19498   50 LMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTE-----------VGYVGRDVESIIRDLV----EGIVFIDEIDK 111
PRK13342 PRK13342
recombination factor protein RarA; Reviewed
189-324 5.48e-04

recombination factor protein RarA; Reviewed


Pssm-ID: 237355 [Multi-domain]  Cd Length: 413  Bit Score: 43.15  E-value: 5.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 189 LIGREKELERAIQvlcRRRKNNPLLVGESGVGKTAIAEGLAwrivqgdvpeVMADCTIYSLDigSLLAGTKyrgDFEKRF 268
Cdd:PRK13342  20 LLGPGKPLRRMIE---AGRLSSMILWGPPGTGKTTLARIIA----------GATDAPFEALS--AVTSGVK---DLREVI 81
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446856817 269 KALLKQLEQDTNSILFIDEIHTIigagaaSGGQVDAanLIkPLLSSGKIRVIGSTT 324
Cdd:PRK13342  82 EEARQRRSAGRRTILFIDEIHRF------NKAQQDA--LL-PHVEDGTITLIGATT 128
COG3899 COG3899
Predicted ATPase [General function prediction only];
5-237 5.90e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 43.31  E-value: 5.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817    5 ELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSF 84
Cdd:COG3899   105 LLLLLALALLLLALLALALLALLLALLLAAGVLGLLLGGLLLAALAALLALAALAAAAAAAAAAAAARAARLRRARAARL 184
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817   85 QRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSSDSASQPGSEEQT 164
Cdd:COG3899   185 AALALRALLLLVLLLLLLLLLLGLLLAAAAALAAAAAAAAAAAPAAPVVLVAALLLALAALLALLLLAARLLGLAGAAAL 264
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446856817  165 GGEDRMENFTTNLNQLARVGGIDPLIGREKELERAIQVL--CRRRKNNPLLV-GESGVGKTAIAEGLAWRIVQGDV 237
Cdd:COG3899   265 LLLGLLAAAAAGRRLLARRLIPQPLVGREAELAALLAALerARAGRGELVLVsGEAGIGKSRLVRELARRARARGG 340
RecA-like_HslU cd19498
ATP-dependent protease ATPase subunit HslU; HslU is a component of the ATP-dependent protease ...
183-312 1.16e-03

ATP-dependent protease ATPase subunit HslU; HslU is a component of the ATP-dependent protease HslVU. In HslVU, HslU ATPase serves to unfold and translocate protein substrate, and the HslV protease degrades the unfolded proteins. This RecA-like_HslU subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410906 [Multi-domain]  Cd Length: 183  Bit Score: 40.83  E-value: 1.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 183 VGGIDPLIGREKELERAIQVLCRRR---------------KNNPLLVGESGVGKTAIAEGLAwRIVqgDVPEVMADCTIY 247
Cdd:cd19498    6 VSELDKYIIGQDEAKRAVAIALRNRwrrmqlpeelrdevtPKNILMIGPTGVGKTEIARRLA-KLA--GAPFIKVEATKF 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446856817 248 SlDIGsllagtkYRG-DFEKRFKALlkqleqdTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL 312
Cdd:cd19498   83 T-EVG-------YVGrDVESIIRDL-------VEGIVFIDEIDKIAKRGGSSGPDVSREGVQRDLL 133
PRK14969 PRK14969
DNA polymerase III subunits gamma and tau; Provisional
463-516 1.20e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237873 [Multi-domain]  Cd Length: 527  Bit Score: 42.04  E-value: 1.20e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446856817 463 GQDKAIEALTEAIKMSRagLGHdhkpvgSFLFAGPTGVGKTEVTVQLAKALGIE 516
Cdd:PRK14969  20 GQEHVVRALTNALEQQR--LHH------AYLFTGTRGVGKTTLARILAKSLNCE 65
PRK13341 PRK13341
AAA family ATPase;
185-341 1.36e-03

AAA family ATPase;


Pssm-ID: 237354 [Multi-domain]  Cd Length: 725  Bit Score: 41.96  E-value: 1.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 185 GIDPLIGREKELERAIQVlcrRRKNNPLLVGESGVGKTAIAEGLAwRIVQGDVpevmadctiysLDIGSLLAGTKyrgDF 264
Cdd:PRK13341  32 GQDHILGEGRLLRRAIKA---DRVGSLILYGPPGVGKTTLARIIA-NHTRAHF-----------SSLNAVLAGVK---DL 93
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446856817 265 EKRFKALLKQLEQ-DTNSILFIDEIHTIIGAgaasggQVDAanlIKPLLSSGKIRVIGSTTYQEFsniFEKDRALARR 341
Cdd:PRK13341  94 RAEVDRAKERLERhGKRTILFIDEVHRFNKA------QQDA---LLPWVENGTITLIGATTENPY---FEVNKALVSR 159
clpX PRK05342
ATP-dependent Clp protease ATP-binding subunit ClpX;
208-245 1.56e-03

ATP-dependent Clp protease ATP-binding subunit ClpX;


Pssm-ID: 235422 [Multi-domain]  Cd Length: 412  Bit Score: 41.68  E-value: 1.56e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 446856817 208 KNNPLLVGESGVGKTAIAEGLAwRIVqgDVPEVMADCT 245
Cdd:PRK05342 108 KSNILLIGPTGSGKTLLAQTLA-RIL--DVPFAIADAT 142
RecA-like_spastin cd19524
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in ...
212-344 1.58e-03

ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in microtubule dynamics; it specifically recognizes and cuts microtubules that are polyglutamylated. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410932 [Multi-domain]  Cd Length: 164  Bit Score: 39.83  E-value: 1.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 212 LLVGESGVGKTAIAEGLAwrivqgdvpevmADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTI 291
Cdd:cd19524   37 LLFGPPGNGKTMLAKAVA------------AESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSL 104
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446856817 292 IgaGAASGGQVDAANLIKP--------LLSSG--KIRVIGSTTYQEfsnifEKDRALARRFQK 344
Cdd:cd19524  105 L--SERSEGEHEASRRLKTefliefdgVQSNGddRVLVMGATNRPQ-----ELDDAVLRRFTK 160
RecA-like_ClpB_Hsp104-like cd19499
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ...
182-288 1.90e-03

Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410907 [Multi-domain]  Cd Length: 178  Bit Score: 39.85  E-value: 1.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 182 RVGGIDPLIgreKELERAIQvLCR---RRKNNP----LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-LDIGS 253
Cdd:cd19499   12 RVVGQDEAV---KAVSDAIR-RARaglSDPNRPigsfLFLGPTGVGKTELAKALAELLFGDEDNLIRIDMSEYMeKHSVS 87
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 446856817 254 LLAGT--KYRGdFEKRFKaLLKQLEQDTNSILFIDEI 288
Cdd:cd19499   88 RLIGAppGYVG-YTEGGQ-LTEAVRRKPYSVVLLDEI 122
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
463-513 2.56e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 2.56e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 446856817 463 GQDKAIEALTEAIKMSRagLGHdhkpvgSFLFAGPTGVGKTEVTVQLAKAL 513
Cdd:PRK12323  20 GQEHVVRALTHALEQQR--LHH------AYLFTGTRGVGKTTLSRILAKSL 62
AAA_22 pfam13401
AAA domain;
205-289 2.93e-03

AAA domain;


Pssm-ID: 379165 [Multi-domain]  Cd Length: 129  Bit Score: 38.48  E-value: 2.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  205 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVP----EVMADCTIYSLdIGSLLAGTKYRGDFEKRFKALLKQLEQ--- 277
Cdd:pfam13401   2 RFGAGILVLTGESGTGKTTLLRRLLEQLPEVRDSvvfvDLPSGTSPKDL-LRALLRALGLPLSGRLSKEELLAALQQlll 80
                          90
                  ....*....|....
gi 446856817  278 --DTNSILFIDEIH 289
Cdd:pfam13401  81 alAVAVVLIIDEAQ 94
RecA-like_ATAD1 cd19520
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ...
212-344 4.21e-03

ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase) is an ATPase that plays a critical role in regulating the surface expression of alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors, thereby regulating synaptic plasticity, learning and memory. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410928 [Multi-domain]  Cd Length: 166  Bit Score: 38.56  E-value: 4.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 212 LLVGESGVGKTAIAEGLAWRivqgdvpevmADCTIYSLDIGSLLagTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTI 291
Cdd:cd19520   39 LLYGPPGCGKTMLAKATAKE----------AGARFINLQVSSLT--DKWYGESQKLVAAVFSLASKLQPSIIFIDEIDSF 106
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446856817 292 IGAGAASGGQVDAA------NLIKPLLSSGKIRVI--GSTtyqefSNIFEKDRALARRFQK 344
Cdd:cd19520  107 LRQRSSTDHEATAMmkaefmSLWDGLSTDGNCRVIvmGAT-----NRPQDLDEAILRRMPK 162
AAA_22 pfam13401
AAA domain;
490-586 4.51e-03

AAA domain;


Pssm-ID: 379165 [Multi-domain]  Cd Length: 129  Bit Score: 38.09  E-value: 4.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  490 GSFLFAGPTGVGKTEVTVQLAKAL---GIELLRFDMSEYME----RHTVSRLIGAPPgyVGFDQGGLLTDAVIKH----- 557
Cdd:pfam13401   6 GILVLTGESGTGKTTLLRRLLEQLpevRDSVVFVDLPSGTSpkdlLRALLRALGLPL--SGRLSKEELLAALQQLllala 83
                          90       100
                  ....*....|....*....|....*....
gi 446856817  558 PHAVLLLDEIEKAHPDVFNILLQVMDNGT 586
Cdd:pfam13401  84 VAVVLIIDEAQHLSLEALEELRDLLNLSS 112
TIGR02928 TIGR02928
orc1/cdc6 family replication initiation protein; Members of this protein family are found ...
187-411 6.54e-03

orc1/cdc6 family replication initiation protein; Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 274354 [Multi-domain]  Cd Length: 365  Bit Score: 39.54  E-value: 6.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  187 DPLIGREKELE---RAIQVLCR-RRKNNPLLVGESGVGKTAIAEGLAwRIVQGDVPE-------VMADCTIYS------L 249
Cdd:TIGR02928  15 DRIVHRDEQIEelaKALRPILRgSRPSNVFIYGKTGTGKTAVTKYVM-KELEEAAEDrdvrvvtVYVNCQILDtlyqvlV 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  250 DIGSLLAGTK----YRG-DFEKRFKALLKQLEQDTNSILFI-DEIHTIIGAG---------AASGGQVDAAnlikpllss 314
Cdd:TIGR02928  94 ELANQLRGSGeevpTTGlSTSEVFRRLYKELNERGDSLIIVlDEIDYLVGDDddllyqlsrARSNGDLDNA--------- 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  315 gKIRVIGSTTYQEF-SNIFEKDRAlarRFQKIDITEPSIDETvQIINGLKPKYE-AHHDVRYTAKAIRAAVELAVKYIND 392
Cdd:TIGR02928 165 -KVGVIGISNDLKFrENLDPRVKS---SLCEEEIIFPPYDAE-ELRDILENRAEkAFYDGVLDDGVIPLCAALAAQEHGD 239
                         250       260
                  ....*....|....*....|
gi 446856817  393 -RhlpdKAIDVIDEAGARAR 411
Cdd:TIGR02928 240 aR----KAIDLLRVAGEIAE 255
PRK14953 PRK14953
DNA polymerase III subunits gamma and tau; Provisional
461-513 6.60e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237867 [Multi-domain]  Cd Length: 486  Bit Score: 39.81  E-value: 6.60e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 446856817 461 VFGQDKAIEALTEAIKMSRagLGHdhkpvgSFLFAGPTGVGKTEVTVQLAKAL 513
Cdd:PRK14953  18 VIGQEIVVRILKNAVKLQR--VSH------AYIFAGPRGTGKTTIARILAKVL 62
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
463-516 6.89e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 39.72  E-value: 6.89e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446856817 463 GQDKAIEALTEAIKMSRagLGHdhkpvgSFLFAGPTGVGKTEVTVQLAKALGIE 516
Cdd:PRK14965  20 GQEHVSRTLQNAIDTGR--VAH------AFLFTGARGVGKTSTARILAKALNCE 65
TniB pfam05621
Bacterial TniB protein; This family consists of several bacterial TniB NTP-binding proteins. ...
195-345 7.35e-03

Bacterial TniB protein; This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition. This entry represents a P-loop domain.


Pssm-ID: 428547  Cd Length: 189  Bit Score: 38.34  E-value: 7.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  195 ELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR---IVQGD---VPEVMADC-------TIYSLDIGSLLAGTKYR 261
Cdd:pfam05621  22 RLEDLLDYPKRLRMPNLLLVGDSNNGKTMIVERFARLhppTDDEDaeiVPVVVVQMppkpdekRLYVAILEALGAPFRPR 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817  262 GDFEKRFKALLKQLEQDTNSILFIDEIHTIIgAGAASgGQVDAANLIKPLLSSGKIRVIGSTTyQEFSNIFEKDRALARR 341
Cdd:pfam05621 102 DRLSKLEQQVLRLLRAVGVRMLIIDEFHNLL-AGSAR-KQREFLNVLKSLGNELRIPIVGVGT-REAVRAIRTDPQLASR 178

                  ....
gi 446856817  342 FQKI 345
Cdd:pfam05621 179 FEPI 182
PRK07399 PRK07399
DNA polymerase III subunit delta'; Validated
461-513 8.68e-03

DNA polymerase III subunit delta'; Validated


Pssm-ID: 236011 [Multi-domain]  Cd Length: 314  Bit Score: 39.11  E-value: 8.68e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 446856817 461 VFGQDKAIEALTEAIKMSRAGLGhdhkpvgsFLFAGPTGVGKTEVTVQLAKAL 513
Cdd:PRK07399   6 LIGQPLAIELLTAAIKQNRIAPA--------YLFAGPEGVGRKLAALCFIEGL 50
RecA-like_NVL_r1-like cd19518
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ...
212-291 9.02e-03

first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410926 [Multi-domain]  Cd Length: 169  Bit Score: 37.77  E-value: 9.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446856817 212 LLVGESGVGKTAIAEGLAWRIvqgDVPevmadctIYSLDIGSLLAGTKyrGDFEKRFKALLKQLEQDTNSILFIDEIHTI 291
Cdd:cd19518   38 LLHGPPGCGKTMLANAIAGEL---KVP-------FLKISATEIVSGVS--GESEEKIRELFDQAISNAPCIVFIDEIDAI 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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