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Conserved domains on  [gi|446873706|ref|WP_000950962|]
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MULTISPECIES: protein NinF [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NinF super family cl05404
NinF protein; This family consists of several bacteriophage NinF proteins as well as related ...
 1-57 1.84e-27

NinF protein; This family consists of several bacteriophage NinF proteins as well as related sequences from E. coli.


The actual alignment was detected with superfamily member pfam05810:

Pssm-ID: 399072  Cd Length: 57  Bit Score: 92.94  E-value: 1.84e-27
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 446873706   1 MLSPSQSLQYQKESVERALTCANCGQKLHVLEVHVCEHCCAELMSDPNSSMYEEEDD 57
Cdd:pfam05810  1 MLSPSQSLQYQKESVERALTCANCGQKLHVLEVHVCEACCAELMSDPNSSMYEEEDD 57
 
Name Accession Description Interval E-value
NinF pfam05810
NinF protein; This family consists of several bacteriophage NinF proteins as well as related ...
 1-57 1.84e-27

NinF protein; This family consists of several bacteriophage NinF proteins as well as related sequences from E. coli.


Pssm-ID: 399072  Cd Length: 57  Bit Score: 92.94  E-value: 1.84e-27
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 446873706   1 MLSPSQSLQYQKESVERALTCANCGQKLHVLEVHVCEHCCAELMSDPNSSMYEEEDD 57
Cdd:pfam05810  1 MLSPSQSLQYQKESVERALTCANCGQKLHVLEVHVCEACCAELMSDPNSSMYEEEDD 57
 
Name Accession Description Interval E-value
NinF pfam05810
NinF protein; This family consists of several bacteriophage NinF proteins as well as related ...
 1-57 1.84e-27

NinF protein; This family consists of several bacteriophage NinF proteins as well as related sequences from E. coli.


Pssm-ID: 399072  Cd Length: 57  Bit Score: 92.94  E-value: 1.84e-27
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 446873706   1 MLSPSQSLQYQKESVERALTCANCGQKLHVLEVHVCEHCCAELMSDPNSSMYEEEDD 57
Cdd:pfam05810  1 MLSPSQSLQYQKESVERALTCANCGQKLHVLEVHVCEACCAELMSDPNSSMYEEEDD 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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