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Conserved domains on  [gi|446880142|ref|WP_000957398|]
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MULTISPECIES: yteA family sporulation protein [Bacillus]

Protein Classification

yteA family sporulation protein( domain architecture ID 10021561)

yteA family sporulation protein similar to Bacillus subtilis uncharacterized protein YteA

SCOP:  4003090

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
bacill_yteA TIGR02890
regulatory protein, yteA family; Members of this predicted regulatory protein are found only ...
 5-160 9.23e-80

regulatory protein, yteA family; Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to Pfam family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. Smaller proteins from the proteobacteria with just the N-terminal domain, including DksA and DksA2 are RNA polymerase-binding regulatory proteins even if the Zn-binding site is not conserved. [Unknown function, General]


:

Pssm-ID: 274340  Cd Length: 159  Bit Score: 236.47  E-value: 9.23e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880142    5 QQVGQFKSILEKQKQELEQTIQTHENTDR-ASERDSVGELSSYDNHPGDMATELYEREKDFGLIELWHKQLEETKHALQK 83
Cdd:TIGR02890   1 QQLAELKNMLLQEKKELEQRLKQMNKEDGiASQRESTGELSQYDNHPADLATELYEREKDIALREHEERELREIEHALQK 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446880142   84 IEAGTYGICEVSGEEIPFERLEAMPTATTCIQHATNKLNMNTRPVEEEVLSPSFHKHDEDHS--VEYDAEDAWQDVANY 160
Cdd:TIGR02890  81 IENGTYGICEVCGKPIPYERLEAIPTATTCVECQNRKEVKNDRPVEEDVLSPPFGKFNFDDKgrTAFDAEDAWQEVARF 159
 
Name Accession Description Interval E-value
bacill_yteA TIGR02890
regulatory protein, yteA family; Members of this predicted regulatory protein are found only ...
 5-160 9.23e-80

regulatory protein, yteA family; Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to Pfam family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. Smaller proteins from the proteobacteria with just the N-terminal domain, including DksA and DksA2 are RNA polymerase-binding regulatory proteins even if the Zn-binding site is not conserved. [Unknown function, General]


Pssm-ID: 274340  Cd Length: 159  Bit Score: 236.47  E-value: 9.23e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880142    5 QQVGQFKSILEKQKQELEQTIQTHENTDR-ASERDSVGELSSYDNHPGDMATELYEREKDFGLIELWHKQLEETKHALQK 83
Cdd:TIGR02890   1 QQLAELKNMLLQEKKELEQRLKQMNKEDGiASQRESTGELSQYDNHPADLATELYEREKDIALREHEERELREIEHALQK 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446880142   84 IEAGTYGICEVSGEEIPFERLEAMPTATTCIQHATNKLNMNTRPVEEEVLSPSFHKHDEDHS--VEYDAEDAWQDVANY 160
Cdd:TIGR02890  81 IENGTYGICEVCGKPIPYERLEAIPTATTCVECQNRKEVKNDRPVEEDVLSPPFGKFNFDDKgrTAFDAEDAWQEVARF 159
DksA COG1734
RNA polymerase-binding transcription factor DksA [Transcription];
2-118 5.68e-39

RNA polymerase-binding transcription factor DksA [Transcription];


Pssm-ID: 441340  Cd Length: 119  Bit Score: 131.18  E-value: 5.68e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880142   2 LTPQQVGQFKSILEKQKQELEQTIqthentDRASERDSVGELSSYDNHPGDMATELYEREKDFGLIELWHKQLEETKHAL 81
Cdd:COG1734    1 MSDEQLEEFRERLLEEREELLEEL------EETEEELLSGDLSAYDPDPADRATEEEERELELALRDRERKLLRKIDAAL 74

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 446880142  82 QKIEAGTYGICEVSGEEIPFERLEAMPTATTCIQHAT 118
Cdd:COG1734   75 ERIEEGTYGICEECGEPIPLERLEARPTATLCIECKE 111
DksA_like NF033459
RNA polymerase-binding protein DksA;
10-114 7.63e-16

RNA polymerase-binding protein DksA;


Pssm-ID: 380301  Cd Length: 113  Bit Score: 71.11  E-value: 7.63e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880142  10 FKSILEKQKQELEQTIQthentdraSERDSVGELSSYD-NHPGDMATELYEREKDFGLIELWHKQLEETKHALQKIEAGT 88
Cdd:NF033459   6 FKNILLERKEQILKNIN--------SSSNEIEELRNSElNDEGDYASISTDSMIEYAISNQQKKELNEIEEALKKIKNGT 77

                         90       100
                 ....*....|....*....|....*.
gi 446880142  89 YGICEVSGEEIPFERLEAMPTATTCI 114
Cdd:NF033459  78 YGICEMCEEPIGIERLKVKPHAKYCI 103
zf-dskA_traR pfam01258
Prokaryotic dksA/traR C4-type zinc finger;
87-114 3.72e-10

Prokaryotic dksA/traR C4-type zinc finger;


Pssm-ID: 426162 [Multi-domain]  Cd Length: 36  Bit Score: 53.83  E-value: 3.72e-10
                          10        20
                  ....*....|....*....|....*...
gi 446880142   87 GTYGICEVSGEEIPFERLEAMPTATTCI 114
Cdd:pfam01258   1 GSYGSCEDCGEPIPEARLRAVPGARLCI 28
dksA PRK10778
RNA polymerase-binding protein DksA;
6-118 2.88e-06

RNA polymerase-binding protein DksA;


Pssm-ID: 182722  Cd Length: 151  Bit Score: 45.90  E-value: 2.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880142   6 QVGQFKSILEKQKQELEQTIQ---THENTDRASERDSVGELSSYDnhpgDMATELYEREKDFGLIelwhKQLEETkhaLQ 82
Cdd:PRK10778  36 QLAHFKRILEAWRNQLRDEVDrtvTHMQDEAANFPDPVDRAAQEE----EFSLELRNRDRERKLI----KKIEKT---LK 104

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 446880142  83 KIEAGTYGICEVSGEEIPFERLEAMPTATTCIQHAT 118
Cdd:PRK10778 105 KVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKT 140
 
Name Accession Description Interval E-value
bacill_yteA TIGR02890
regulatory protein, yteA family; Members of this predicted regulatory protein are found only ...
 5-160 9.23e-80

regulatory protein, yteA family; Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to Pfam family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. Smaller proteins from the proteobacteria with just the N-terminal domain, including DksA and DksA2 are RNA polymerase-binding regulatory proteins even if the Zn-binding site is not conserved. [Unknown function, General]


Pssm-ID: 274340  Cd Length: 159  Bit Score: 236.47  E-value: 9.23e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880142    5 QQVGQFKSILEKQKQELEQTIQTHENTDR-ASERDSVGELSSYDNHPGDMATELYEREKDFGLIELWHKQLEETKHALQK 83
Cdd:TIGR02890   1 QQLAELKNMLLQEKKELEQRLKQMNKEDGiASQRESTGELSQYDNHPADLATELYEREKDIALREHEERELREIEHALQK 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446880142   84 IEAGTYGICEVSGEEIPFERLEAMPTATTCIQHATNKLNMNTRPVEEEVLSPSFHKHDEDHS--VEYDAEDAWQDVANY 160
Cdd:TIGR02890  81 IENGTYGICEVCGKPIPYERLEAIPTATTCVECQNRKEVKNDRPVEEDVLSPPFGKFNFDDKgrTAFDAEDAWQEVARF 159
DksA COG1734
RNA polymerase-binding transcription factor DksA [Transcription];
2-118 5.68e-39

RNA polymerase-binding transcription factor DksA [Transcription];


Pssm-ID: 441340  Cd Length: 119  Bit Score: 131.18  E-value: 5.68e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880142   2 LTPQQVGQFKSILEKQKQELEQTIqthentDRASERDSVGELSSYDNHPGDMATELYEREKDFGLIELWHKQLEETKHAL 81
Cdd:COG1734    1 MSDEQLEEFRERLLEEREELLEEL------EETEEELLSGDLSAYDPDPADRATEEEERELELALRDRERKLLRKIDAAL 74

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 446880142  82 QKIEAGTYGICEVSGEEIPFERLEAMPTATTCIQHAT 118
Cdd:COG1734   75 ERIEEGTYGICEECGEPIPLERLEARPTATLCIECKE 111
DksA_like NF033459
RNA polymerase-binding protein DksA;
10-114 7.63e-16

RNA polymerase-binding protein DksA;


Pssm-ID: 380301  Cd Length: 113  Bit Score: 71.11  E-value: 7.63e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880142  10 FKSILEKQKQELEQTIQthentdraSERDSVGELSSYD-NHPGDMATELYEREKDFGLIELWHKQLEETKHALQKIEAGT 88
Cdd:NF033459   6 FKNILLERKEQILKNIN--------SSSNEIEELRNSElNDEGDYASISTDSMIEYAISNQQKKELNEIEEALKKIKNGT 77

                         90       100
                 ....*....|....*....|....*.
gi 446880142  89 YGICEVSGEEIPFERLEAMPTATTCI 114
Cdd:NF033459  78 YGICEMCEEPIGIERLKVKPHAKYCI 103
zf-dskA_traR pfam01258
Prokaryotic dksA/traR C4-type zinc finger;
87-114 3.72e-10

Prokaryotic dksA/traR C4-type zinc finger;


Pssm-ID: 426162 [Multi-domain]  Cd Length: 36  Bit Score: 53.83  E-value: 3.72e-10
                          10        20
                  ....*....|....*....|....*...
gi 446880142   87 GTYGICEVSGEEIPFERLEAMPTATTCI 114
Cdd:pfam01258   1 GSYGSCEDCGEPIPEARLRAVPGARLCI 28
dksA PRK10778
RNA polymerase-binding protein DksA;
6-118 2.88e-06

RNA polymerase-binding protein DksA;


Pssm-ID: 182722  Cd Length: 151  Bit Score: 45.90  E-value: 2.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880142   6 QVGQFKSILEKQKQELEQTIQ---THENTDRASERDSVGELSSYDnhpgDMATELYEREKDFGLIelwhKQLEETkhaLQ 82
Cdd:PRK10778  36 QLAHFKRILEAWRNQLRDEVDrtvTHMQDEAANFPDPVDRAAQEE----EFSLELRNRDRERKLI----KKIEKT---LK 104

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 446880142  83 KIEAGTYGICEVSGEEIPFERLEAMPTATTCIQHAT 118
Cdd:PRK10778 105 KVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKT 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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