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Conserved domains on  [gi|446880721|ref|WP_000957977|]
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MULTISPECIES: fimbrial-like protein [Salmonella]

Protein Classification

fimbrial protein( domain architecture ID 10015028)

fimbrial protein similar to Escherichia coli fimbrial-like protein YadK, which is part of the yadCKLM-htrE-yadVN fimbrial operon and may contribute to adhesion to various surfaces in specific environmental niches

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15262 PRK15262
putative fimbrial protein StaF; Provisional
 1-197 3.38e-92

putative fimbrial protein StaF; Provisional


:

Pssm-ID: 237933  Cd Length: 197  Bit Score: 267.71  E-value: 3.38e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721   1 MLTRRQCYFLfcsGLATAFLSRPGYADHNVDVTATVINNTCRLEVNDNGVVRLPTVKLDYFSNEITAETDYAGGQNFTLR 80
Cdd:PRK15262   4 KLMKKIILFL---GLLFALTSPPAYAGQDVDLTANIKNSTCQSGISNNGNVDLGTVGVGYFADNVTAETYYPGGKEFTIT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721  81 LVDCPVSDDK--ISQVLFTFSPQQGALPADNLQVFANELaqNNDGAKNVGVVIFSAQSNATRFNVLDVNGMSKAIYSLPD 158
Cdd:PRK15262  81 VVDCALQGTGsvLNQLHFDFRPQSGVMATGSQQIFANEA--VAGGAKNVGVVIFSIQDPANTFNVLNSDGSSRSVYPVMT 158

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 446880721 159 SNYSNSQWTFYARMQKIVSMEDVSSGLVTARVLVNISYQ 197
Cdd:PRK15262 159 SALNNSSWKFYARMQKIDPALDVTSGQVTSHVLVDVYYE 197
 
Name Accession Description Interval E-value
PRK15262 PRK15262
putative fimbrial protein StaF; Provisional
 1-197 3.38e-92

putative fimbrial protein StaF; Provisional


Pssm-ID: 237933  Cd Length: 197  Bit Score: 267.71  E-value: 3.38e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721   1 MLTRRQCYFLfcsGLATAFLSRPGYADHNVDVTATVINNTCRLEVNDNGVVRLPTVKLDYFSNEITAETDYAGGQNFTLR 80
Cdd:PRK15262   4 KLMKKIILFL---GLLFALTSPPAYAGQDVDLTANIKNSTCQSGISNNGNVDLGTVGVGYFADNVTAETYYPGGKEFTIT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721  81 LVDCPVSDDK--ISQVLFTFSPQQGALPADNLQVFANELaqNNDGAKNVGVVIFSAQSNATRFNVLDVNGMSKAIYSLPD 158
Cdd:PRK15262  81 VVDCALQGTGsvLNQLHFDFRPQSGVMATGSQQIFANEA--VAGGAKNVGVVIFSIQDPANTFNVLNSDGSSRSVYPVMT 158

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 446880721 159 SNYSNSQWTFYARMQKIVSMEDVSSGLVTARVLVNISYQ 197
Cdd:PRK15262 159 SALNNSSWKFYARMQKIDPALDVTSGQVTSHVLVDVYYE 197
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
9-197 1.83e-17

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 75.85  E-value: 1.83e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721   9 FLFCSGLATAFLSRPGYADH-NVDVTATVINNTCRLEVND-NGVVRLPTVKldyfSNEITAETDYAGGQNFTLRLVDCPV 86
Cdd:COG3539    4 LLLALLLALALSAAAAAAADgTVNFTGTVVAPTCTINTGSkDQTVDLGTVS----TSDLNGVGSTSGPKPFSIKLTNCDA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721  87 SDDKISQVLFTfspqqGALPADNLQVFANelaQNNDGAKNVGVVIFSAQSNATRFNVldvngmSKAIYSLPDSNysNSQW 166
Cdd:COG3539   80 GTSNSVKVTFT-----GTADSANPGLLAN---TGSGGASGVGIQLLDSDGTPIPLGT------PSSAVTLTSNG--SATL 143

                        170       180       190
                 ....*....|....*....|....*....|.
gi 446880721 167 TFYARMQKivSMEDVSSGLVTARVLVNISYQ 197
Cdd:COG3539  144 PFYARYVA--TGATVTAGSFNATATFTIDYQ 172
Fimbrial pfam00419
Fimbrial protein;
29-197 8.20e-04

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 38.19  E-value: 8.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721   29 NVDVTATVINNTCRLEVNDNGVVRLPTVKLDYFSNEITAETDyaggQNFTLRlVDCPVSDDKISQVLFTFSpqqgalpAD 108
Cdd:pfam00419   2 NFTGTVTRVPATCKITAGTPIEVDFGQIPVNELNAGGEGSRQ----KPFSIT-LECSSGSSAVKVTVGLFG-------TA 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721  109 NLQVFANELAQNNDG-AKNVGVVIFSAQSNATRFNvldvNGMSKAIYSLpdSNYSNSQWTFYARMQKIVSmEDVSSGLVT 187
Cdd:pfam00419  70 DASSPNLLLTGNGAGaATGVGIRLYDANGGALPPN----NGTSSIPVSA--TAAVATGITFTASLVATTG-GTPTAGDFN 142

                         170
                  ....*....|
gi 446880721  188 ARVLVNISYQ 197
Cdd:pfam00419 143 ATATIVVDYQ 152
 
Name Accession Description Interval E-value
PRK15262 PRK15262
putative fimbrial protein StaF; Provisional
 1-197 3.38e-92

putative fimbrial protein StaF; Provisional


Pssm-ID: 237933  Cd Length: 197  Bit Score: 267.71  E-value: 3.38e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721   1 MLTRRQCYFLfcsGLATAFLSRPGYADHNVDVTATVINNTCRLEVNDNGVVRLPTVKLDYFSNEITAETDYAGGQNFTLR 80
Cdd:PRK15262   4 KLMKKIILFL---GLLFALTSPPAYAGQDVDLTANIKNSTCQSGISNNGNVDLGTVGVGYFADNVTAETYYPGGKEFTIT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721  81 LVDCPVSDDK--ISQVLFTFSPQQGALPADNLQVFANELaqNNDGAKNVGVVIFSAQSNATRFNVLDVNGMSKAIYSLPD 158
Cdd:PRK15262  81 VVDCALQGTGsvLNQLHFDFRPQSGVMATGSQQIFANEA--VAGGAKNVGVVIFSIQDPANTFNVLNSDGSSRSVYPVMT 158

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 446880721 159 SNYSNSQWTFYARMQKIVSMEDVSSGLVTARVLVNISYQ 197
Cdd:PRK15262 159 SALNNSSWKFYARMQKIDPALDVTSGQVTSHVLVDVYYE 197
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
9-197 1.83e-17

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 75.85  E-value: 1.83e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721   9 FLFCSGLATAFLSRPGYADH-NVDVTATVINNTCRLEVND-NGVVRLPTVKldyfSNEITAETDYAGGQNFTLRLVDCPV 86
Cdd:COG3539    4 LLLALLLALALSAAAAAAADgTVNFTGTVVAPTCTINTGSkDQTVDLGTVS----TSDLNGVGSTSGPKPFSIKLTNCDA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721  87 SDDKISQVLFTfspqqGALPADNLQVFANelaQNNDGAKNVGVVIFSAQSNATRFNVldvngmSKAIYSLPDSNysNSQW 166
Cdd:COG3539   80 GTSNSVKVTFT-----GTADSANPGLLAN---TGSGGASGVGIQLLDSDGTPIPLGT------PSSAVTLTSNG--SATL 143

                        170       180       190
                 ....*....|....*....|....*....|.
gi 446880721 167 TFYARMQKivSMEDVSSGLVTARVLVNISYQ 197
Cdd:COG3539  144 PFYARYVA--TGATVTAGSFNATATFTIDYQ 172
PRK15296 PRK15296
fimbrial protein SthA;
2-197 2.85e-08

fimbrial protein SthA;


Pssm-ID: 185196  Cd Length: 181  Bit Score: 51.24  E-value: 2.85e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721   2 LTRRQCYFLfcsGLATAFLSRPGYADHNVDVTATVINNTCRLEVNDNGVVrlpTVKL-DYFSNEITAETDYAGGQNFTLR 80
Cdd:PRK15296   1 MFNKKIIIL---AMLTAVASTPVFAQNTITFNGKIYDQACTVQVNGSTDT---TIDLgNYSKERIAEKGATTDYVPFTVS 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721  81 LVDCPVSDDKI-SQVLFTFspqQGALPADNLQVFANELAQNNDGAKNVGVVIfsaqSNATRFNVLDVNGmsKAIYSLPdS 159
Cdd:PRK15296  75 LVSCPEAGTGVpTQAMFRF---HGATDDSNPTYFKNADEGSETGAAGVGISI----QNASHSDVTDNTD--DAAVNLP-T 144

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 446880721 160 NYSNSQWTFYARMQKIVSmEDVSSGLVTARVLVNISYQ 197
Cdd:PRK15296 145 DGSTADFTYYAAMANDGS-ATVTGGDVSTQVTYTVSYQ 181
Fimbrial pfam00419
Fimbrial protein;
29-197 8.20e-04

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 38.19  E-value: 8.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721   29 NVDVTATVINNTCRLEVNDNGVVRLPTVKLDYFSNEITAETDyaggQNFTLRlVDCPVSDDKISQVLFTFSpqqgalpAD 108
Cdd:pfam00419   2 NFTGTVTRVPATCKITAGTPIEVDFGQIPVNELNAGGEGSRQ----KPFSIT-LECSSGSSAVKVTVGLFG-------TA 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721  109 NLQVFANELAQNNDG-AKNVGVVIFSAQSNATRFNvldvNGMSKAIYSLpdSNYSNSQWTFYARMQKIVSmEDVSSGLVT 187
Cdd:pfam00419  70 DASSPNLLLTGNGAGaATGVGIRLYDANGGALPPN----NGTSSIPVSA--TAAVATGITFTASLVATTG-GTPTAGDFN 142

                         170
                  ....*....|
gi 446880721  188 ARVLVNISYQ 197
Cdd:pfam00419 143 ATATIVVDYQ 152
PRK15300 PRK15300
fimbrial protein StiA; Provisional
 27-196 3.49e-03

fimbrial protein StiA; Provisional


Pssm-ID: 185200  Cd Length: 179  Bit Score: 37.00  E-value: 3.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721  27 DHNVDVTATVINNTCRLEVNDNGVvrlpTVKlDYFSNEITAETDYAGGQNFTLRLVDCPVSDDKISQVLFtfspqQGALP 106
Cdd:PRK15300  28 DGTVHITGLIKQNACTVKTDSVEV----TLQ-EEFASLFTAAGQTAGDTDFTIELENCDANVYSSVQARF-----EGTLD 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446880721 107 ADNLQVFANElaqnnDGAKNVGVVIFSAQSNATRFNvlDVNGMSKAIYSLPDSNYSNSQWTFYARMqkIVSMEDVSSGLV 186
Cdd:PRK15300  98 GTDATILKNE-----DDAENIGVQILDKTSTPMTFN--DLQAWSAAVALPTAEGVTELSMPFTARY--IATAVPVKSGTV 168

                        170
                 ....*....|
gi 446880721 187 TARVLVNISY 196
Cdd:PRK15300 169 DATATFYLQY 178
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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