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Conserved domains on  [gi|446882140|ref|WP_000959396|]
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MULTISPECIES: YraN family protein [Acinetobacter]

Protein Classification

PDDEXK family nuclease; Uma2 family endonuclease( domain architecture ID 10014810)

PDDEXK family nuclease similar to Halobacterium salinarum endonuclease NucS 1 that cleaves both 3' and 5' ssDNA extremities of branched DNA structures| Uma2 family endonuclease belongs to the PDDEXK nuclease superfamily and may act as a restriction endonuclease

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14674 PRK14674
hypothetical protein; Provisional
 1-133 1.23e-94

hypothetical protein; Provisional


:

Pssm-ID: 184788  Cd Length: 133  Bit Score: 268.76  E-value: 1.23e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   1 MLVAQQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTA 80
Cdd:PRK14674   1 MLVAQQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 446882140  81 MRFLQRYPSYQDFYCRFDVICFDFPQKIAKTVQQDFSKFHYDLQWIENAFTLD 133
Cdd:PRK14674  81 MRFLQRYPSYQDFYCRFDVICFDFPQKIAKTVQQDFSKFHYDLQWIENAFTLD 133
 
Name Accession Description Interval E-value
PRK14674 PRK14674
hypothetical protein; Provisional
 1-133 1.23e-94

hypothetical protein; Provisional


Pssm-ID: 184788  Cd Length: 133  Bit Score: 268.76  E-value: 1.23e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   1 MLVAQQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTA 80
Cdd:PRK14674   1 MLVAQQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 446882140  81 MRFLQRYPSYQDFYCRFDVICFDFPQKIAKTVQQDFSKFHYDLQWIENAFTLD 133
Cdd:PRK14674  81 MRFLQRYPSYQDFYCRFDVICFDFPQKIAKTVQQDFSKFHYDLQWIENAFTLD 133
YraN COG0792
Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 ...
 4-132 7.57e-47

Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family [Replication, recombination and repair];


Pssm-ID: 440555  Cd Length: 116  Bit Score: 147.20  E-value: 7.57e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   4 AQQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRF 83
Cdd:COG0792    2 RRELGRRGEDLAARYLERKGYRILARNWRCRGGEIDLIARDGDTLVFVEVKTRRSARFGGPAEAVTPRKQRRLRRAAEAY 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 446882140  84 LQRYPSYQDFYCRFDVICFDFPQKiaktvqqdfskfhyDLQWIENAFTL 132
Cdd:COG0792   82 LARHPGLADLPVRFDVVAVTGDGR--------------EIEHIENAFDA 116
UPF0102 pfam02021
Uncharacterized protein family UPF0102; The function of this family is unknown.
 11-102 9.56e-39

Uncharacterized protein family UPF0102; The function of this family is unknown.


Pssm-ID: 460416 [Multi-domain]  Cd Length: 92  Bit Score: 125.59  E-value: 9.56e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   11 AEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRFLQRYPSY 90
Cdd:pfam02021   1 GEDLAARYLEAKGYRILARNWRCRFGEIDIIARDGDTLVFVEVKTRSSTRFGSPAEAVTPRKQRRLRRAAAAYLAEHPLY 80

                          90
                  ....*....|..
gi 446882140   91 QDFYCRFDVICF 102
Cdd:pfam02021  81 ADLPCRFDVIAV 92
TIGR00252 TIGR00252
TIGR00252 family protein; the scores for Mycobacterium tuberculosis and Treponema pallidum are ...
 5-130 4.48e-23

TIGR00252 family protein; the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment [Hypothetical proteins, Conserved]


Pssm-ID: 129354  Cd Length: 119  Bit Score: 86.88  E-value: 4.48e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140    5 QQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRFL 84
Cdd:TIGR00252   6 TQLGQAGESQARAWLEQKGLKFIAANWNSPWGEIDLIMHDTKTIAFVEVRTRSGGNYGGALLSVNARKQEKILQTANLWL 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 446882140   85 QRY-PSYQDFYCRFDVICFdfpqkiAKTVQqdfskfhyDLQWIENAF 130
Cdd:TIGR00252  86 ASQnPSWSDWNCRFDVMAF------FPTGE--------NAEWIFANL 118
PoNe_Nuclease cd20736
Polymorphic Nuclease effector (PoNe) co-occurring with an N-terminal nuclease domain; The ...
 7-84 6.91e-20

Polymorphic Nuclease effector (PoNe) co-occurring with an N-terminal nuclease domain; The DNase toxin domain called PoNe (Polymorphic Nuclease effector) belongs to a diverse superfamily of PD-(D/E)xK phosphodiesterases, and is associated with several toxin delivery systems including type V, type VI, and type VII. PoNe toxicity is antagonized by cognate immunity proteins (PoNi) containing DUF1911 and DUF1910 domains. This subfamily contains proteins with PoNe domains that typically co-occur with nuclease N-terminal domains such as endonucleases involved in methyl-directed DNA mismatch repair in gram negative bacteria.


Pssm-ID: 410645 [Multi-domain]  Cd Length: 80  Bit Score: 77.66  E-value: 6.91e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   7 LGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGN--ELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRFL 84
Cdd:cd20736    1 LGAWGEDIAARYLREKGYRILERNYRGGGGEIDLIARDPEtgTIVFVEVKTRRSDKFGHPGEAVTRAKQRRLIKAALEYL 80
 
Name Accession Description Interval E-value
PRK14674 PRK14674
hypothetical protein; Provisional
 1-133 1.23e-94

hypothetical protein; Provisional


Pssm-ID: 184788  Cd Length: 133  Bit Score: 268.76  E-value: 1.23e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   1 MLVAQQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTA 80
Cdd:PRK14674   1 MLVAQQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 446882140  81 MRFLQRYPSYQDFYCRFDVICFDFPQKIAKTVQQDFSKFHYDLQWIENAFTLD 133
Cdd:PRK14674  81 MRFLQRYPSYQDFYCRFDVICFDFPQKIAKTVQQDFSKFHYDLQWIENAFTLD 133
YraN COG0792
Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 ...
 4-132 7.57e-47

Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family [Replication, recombination and repair];


Pssm-ID: 440555  Cd Length: 116  Bit Score: 147.20  E-value: 7.57e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   4 AQQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRF 83
Cdd:COG0792    2 RRELGRRGEDLAARYLERKGYRILARNWRCRGGEIDLIARDGDTLVFVEVKTRRSARFGGPAEAVTPRKQRRLRRAAEAY 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 446882140  84 LQRYPSYQDFYCRFDVICFDFPQKiaktvqqdfskfhyDLQWIENAFTL 132
Cdd:COG0792   82 LARHPGLADLPVRFDVVAVTGDGR--------------EIEHIENAFDA 116
PRK12497 PRK12497
YraN family protein;
1-132 2.80e-45

YraN family protein;


Pssm-ID: 237119  Cd Length: 119  Bit Score: 143.02  E-value: 2.80e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   1 MLVAQQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTA 80
Cdd:PRK12497   2 MMKKRQLGAAGEDLAARYLESKGLRILARNFRCRFGEIDLIARDGDTLVFVEVKTRRSDRFGGAAEAVTPRKQRRLRRAA 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446882140  81 MRFLQRYPSYQDFYCRFDVICFDFPQkiaktvqqdfskfhYDLQWIENAFTL 132
Cdd:PRK12497  82 QLWLARHPSLADLPCRFDVVAIGGPG--------------PEIEHIKNAFDA 119
UPF0102 pfam02021
Uncharacterized protein family UPF0102; The function of this family is unknown.
 11-102 9.56e-39

Uncharacterized protein family UPF0102; The function of this family is unknown.


Pssm-ID: 460416 [Multi-domain]  Cd Length: 92  Bit Score: 125.59  E-value: 9.56e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   11 AEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRFLQRYPSY 90
Cdd:pfam02021   1 GEDLAARYLEAKGYRILARNWRCRFGEIDIIARDGDTLVFVEVKTRSSTRFGSPAEAVTPRKQRRLRRAAAAYLAEHPLY 80

                          90
                  ....*....|..
gi 446882140   91 QDFYCRFDVICF 102
Cdd:pfam02021  81 ADLPCRFDVIAV 92
PRK14673 PRK14673
hypothetical protein; Provisional
 8-133 6.58e-25

hypothetical protein; Provisional


Pssm-ID: 237786  Cd Length: 137  Bit Score: 92.05  E-value: 6.58e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   8 GQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVK-RGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRFLQR 86
Cdd:PRK14673  29 GAAFEDRALAFLQRAGLALVARNYRCRGGEIDLVMReRDGTLVFVEVRARASRRFGGAAASIGARKQRRLVAAALHFLAR 108

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 446882140  87 YPSyqDFYCRFDVICFDFPQkiaktvqqdfskfhydLQWIENAFTLD 133
Cdd:PRK14673 109 HGG--APACRFDVVAFEGGR----------------LEWLRDAFRAD 137
PRK14682 PRK14682
hypothetical protein; Provisional
 6-132 1.49e-24

hypothetical protein; Provisional


Pssm-ID: 173145  Cd Length: 117  Bit Score: 90.50  E-value: 1.49e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   6 QLGQWAEQTALKLLKEQNYEWVASNYHS-RRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRFL 84
Cdd:PRK14682   5 EIGNKAELQACKFLHTQALEILAHNFKAlPYGEIDIIALDKDTLVFIEVKYRSKTKFAQAEEMLTYSKQQKLVNSASIYL 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 446882140  85 QRYPSYQDFYCRFDVICFDfpqkiaktvqqdfskfHYDLQWIENAFTL 132
Cdd:PRK14682  85 QHNPQYQDYQCRFDLIAIN----------------ESNINWIKNAFGV 116
TIGR00252 TIGR00252
TIGR00252 family protein; the scores for Mycobacterium tuberculosis and Treponema pallidum are ...
 5-130 4.48e-23

TIGR00252 family protein; the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment [Hypothetical proteins, Conserved]


Pssm-ID: 129354  Cd Length: 119  Bit Score: 86.88  E-value: 4.48e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140    5 QQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRFL 84
Cdd:TIGR00252   6 TQLGQAGESQARAWLEQKGLKFIAANWNSPWGEIDLIMHDTKTIAFVEVRTRSGGNYGGALLSVNARKQEKILQTANLWL 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 446882140   85 QRY-PSYQDFYCRFDVICFdfpqkiAKTVQqdfskfhyDLQWIENAF 130
Cdd:TIGR00252  86 ASQnPSWSDWNCRFDVMAF------FPTGE--------NAEWIFANL 118
PRK14687 PRK14687
hypothetical protein; Provisional
 5-103 3.08e-22

hypothetical protein; Provisional


Pssm-ID: 237788  Cd Length: 173  Bit Score: 86.22  E-value: 3.08e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   5 QQLGQWAEQTALKLLKEQNYEWVASNYHSRR-GEVDLI-VKRG---NELIFVEVKARGQGNYGQACEMVTLSKQKKIIKT 79
Cdd:PRK14687  30 QRQGGGFEQLACEFLQEQGLILIARNWQQPKvGELDLVmLEKGqawSTLVFAEVRQRKLSGFGDAAASVTAGKQRKIIKT 109

                         90       100
                 ....*....|....*....|....
gi 446882140  80 AMRFLQRYPSYQDFYCRFDVICFD 103
Cdd:PRK14687 110 ARYFLRQHPEYADYECRFDVIAYN 133
PoNe_Nuclease cd20736
Polymorphic Nuclease effector (PoNe) co-occurring with an N-terminal nuclease domain; The ...
 7-84 6.91e-20

Polymorphic Nuclease effector (PoNe) co-occurring with an N-terminal nuclease domain; The DNase toxin domain called PoNe (Polymorphic Nuclease effector) belongs to a diverse superfamily of PD-(D/E)xK phosphodiesterases, and is associated with several toxin delivery systems including type V, type VI, and type VII. PoNe toxicity is antagonized by cognate immunity proteins (PoNi) containing DUF1911 and DUF1910 domains. This subfamily contains proteins with PoNe domains that typically co-occur with nuclease N-terminal domains such as endonucleases involved in methyl-directed DNA mismatch repair in gram negative bacteria.


Pssm-ID: 410645 [Multi-domain]  Cd Length: 80  Bit Score: 77.66  E-value: 6.91e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   7 LGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGN--ELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRFL 84
Cdd:cd20736    1 LGAWGEDIAARYLREKGYRILERNYRGGGGEIDLIARDPEtgTIVFVEVKTRRSDKFGHPGEAVTRAKQRRLIKAALEYL 80
PRK14675 PRK14675
hypothetical protein; Provisional
 7-132 6.13e-18

hypothetical protein; Provisional


Pssm-ID: 173138  Cd Length: 125  Bit Score: 73.72  E-value: 6.13e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   7 LGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRFLQR 86
Cdd:PRK14675  10 LGEIGESIAVTYLKGLRYKIVERNFRCRCGEIDIIARDGKTLVFVEVKTRKNYAYGVPQLAVTPFKQRQISKAALTWLAK 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 446882140  87 yPSYQDFYCRFDVICFDFPQKIAKTVQQdfskfhydlqwIENAFTL 132
Cdd:PRK14675  90 -KKLLDAEARFDVIAITQRDHAVPEIEH-----------IKNAFEL 123
PRK14678 PRK14678
hypothetical protein; Provisional
 5-100 1.37e-15

hypothetical protein; Provisional


Pssm-ID: 173141  Cd Length: 120  Bit Score: 67.59  E-value: 1.37e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   5 QQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARgQGNYgqACEMVTLSKQKKIIKTAMRFL 84
Cdd:PRK14678   6 RRLGDWGEQVAAAYLERCGYTIIARNWRCRAGEIDIVAREGDQLVFVEVRTR-RDQD--ALESITLAKRQRLVALAYHYL 82

                         90
                 ....*....|....*.
gi 446882140  85 QRYPSYQDFYCRFDVI 100
Cdd:PRK14678  83 AAHDLPATTPWRIDVI 98
PRK14680 PRK14680
hypothetical protein; Provisional
 6-101 2.20e-15

hypothetical protein; Provisional


Pssm-ID: 173143  Cd Length: 134  Bit Score: 67.55  E-value: 2.20e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   6 QLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRFLQ 85
Cdd:PRK14680   7 AIGQHGEDAAAALLQRTGHRILARNWRHGGLELDIVCEDGDTIVFVEVKTRAAHGLTSPTDALTHSKRHRLIRAARAWLA 86

                         90
                 ....*....|....*.
gi 446882140  86 RYPSYqDFYCRFDVIC 101
Cdd:PRK14680  87 AHDAW-DKPCRFDLVC 101
PRK14684 PRK14684
hypothetical protein; Provisional
 3-100 3.36e-15

hypothetical protein; Provisional


Pssm-ID: 173147  Cd Length: 120  Bit Score: 66.60  E-value: 3.36e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   3 VAQQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMR 82
Cdd:PRK14684   4 LTQKIGFNAEKTACRYLQKQGLSFITKNFRYKQGEIDLIMSDQSMLVFIEVRYRRFSDFIHPVATVTPLKQRRLIKTALH 83

                         90
                 ....*....|....*...
gi 446882140  83 FLQRYPSYQDFYCRFDVI 100
Cdd:PRK14684  84 YLQKHRLLDKISCRFDIV 101
PRK14681 PRK14681
hypothetical protein; Provisional
 2-130 5.77e-14

hypothetical protein; Provisional


Pssm-ID: 237787  Cd Length: 158  Bit Score: 64.56  E-value: 5.77e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   2 LVAQQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDlIVKRGNE--LIFVEVKARGQGNYGQACEMVTLSKQKKIIKT 79
Cdd:PRK14681  40 LTPKQIGALGEQYAAAWLEEHGWTTLSRNWHCRYGELD-IVALNPEytIVFVEVKTRRSMHYGYPQEAVTAAKQHNLRKA 118

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446882140  80 AMRFL-QRYPSYQDFYCRFDVicfdfpqkIAKTVQQDFSKFHYdlqwIENAF 130
Cdd:PRK14681 119 ACDWLlERRNRVPHIGVRFDV--------VTVVVRVGRPLVHH----IENAF 158
PRK14685 PRK14685
hypothetical protein; Provisional
 5-103 2.99e-12

hypothetical protein; Provisional


Pssm-ID: 173148  Cd Length: 177  Bit Score: 60.57  E-value: 2.99e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   5 QQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMR-- 82
Cdd:PRK14685  42 QRCGQAYESAALRWLARQGLRPLARNLRCRAGEIDLAMRDGEVLVLVEVRARAHAGYGGAAASIGASKQGRLARAAALll 121

                         90       100
                 ....*....|....*....|...
gi 446882140  83 --FLQRYPSYQDFYCRFDVICFD 103
Cdd:PRK14685 122 pvLLRRHWPGAPPPVRFDVVAFE 144
PRK14688 PRK14688
hypothetical protein; Provisional
 5-106 6.60e-12

hypothetical protein; Provisional


Pssm-ID: 184792  Cd Length: 121  Bit Score: 58.14  E-value: 6.60e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   5 QQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRFL 84
Cdd:PRK14688   6 KETGEFGEKLAAEYLKGMGYSIIQTNCRLPEGEIDIVGQDGEYLVFIEVRTKRRLGYGLPAESVTPRKKAHLMASAESYI 85

                         90       100
                 ....*....|....*....|..
gi 446882140  85 QRYpSYQDFYCRFDVICFDFPQ 106
Cdd:PRK14688  86 QKH-RLEHFPCRIDFVSVDLSQ 106
PRK14676 PRK14676
hypothetical protein; Provisional
 3-103 1.39e-11

hypothetical protein; Provisional


Pssm-ID: 173139  Cd Length: 117  Bit Score: 57.26  E-value: 1.39e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   3 VAQQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKArgQGNYGQACEMVTLSKQKKIIKTAMR 82
Cdd:PRK14676   5 VSYYAGQTAEEAVARIYDRSGRPVAARRWRGVSGEIDLIAREGAEVIFIEVKK--SKSHAAAAARLSRRQMDRIYGAASE 82

                         90       100
                 ....*....|....*....|.
gi 446882140  83 FLQRYPSYQDFYCRFDVICFD 103
Cdd:PRK14676  83 FLAGEPRGQLTASRFDVALVD 103
PRK14689 PRK14689
hypothetical protein; Provisional
 1-56 2.58e-11

hypothetical protein; Provisional


Pssm-ID: 173152  Cd Length: 124  Bit Score: 56.66  E-value: 2.58e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446882140   1 MLVAQQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKAR 56
Cdd:PRK14689   4 MMKSQALGAWAEERVLRLLQRRGWRLLDRNWSCRWGELDLVLEKQQRLLVVEVKGR 59
PRK14686 PRK14686
hypothetical protein; Provisional
 1-100 2.66e-10

hypothetical protein; Provisional


Pssm-ID: 184791  Cd Length: 119  Bit Score: 54.00  E-value: 2.66e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   1 MLVAQQLGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTA 80
Cdd:PRK14686   1 MAEHNELGKEGEDLAVEFLIKKGYTILERNYRFQKAEIDIIAQKGNILVIVEVKTRSSSDFGNPQDFVKPKKIQLLVKAV 80

                         90       100
                 ....*....|....*....|
gi 446882140  81 MRFLQRYPsyQDFYCRFDVI 100
Cdd:PRK14686  81 NHYIEDKD--LDVEIRFDII 98
PRK14679 PRK14679
hypothetical protein; Provisional
 8-100 2.61e-09

hypothetical protein; Provisional


Pssm-ID: 173142  Cd Length: 128  Bit Score: 51.44  E-value: 2.61e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   8 GQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNygQACEMVTLSKQKKIIKTAMRFLQRY 87
Cdd:PRK14679  18 GLSAEGLALLALMLKGYRPLARRFAAAGGEIDLIVRRGRTIAFVEVKARATLD--AAATAIDARKRARFSRAARAWLARH 95

                         90
                 ....*....|...
gi 446882140  88 PSYQDFYCRFDVI 100
Cdd:PRK14679  96 PLAAGATLRADAV 108
PRK14677 PRK14677
hypothetical protein; Provisional
 11-84 2.64e-07

hypothetical protein; Provisional


Pssm-ID: 184789  Cd Length: 107  Bit Score: 45.67  E-value: 2.64e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446882140  11 AEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKArGQGNYgQACEMVTLSKQKKIIKTAMRFL 84
Cdd:PRK14677   6 AEELACKFLKKKGYKILERNYRTKYGEIDIVARDGREIVFVEVKS-GSGKV-DPLERIDLKKVRNLEQTARFYM 77
PRK14683 PRK14683
hypothetical protein; Provisional
 7-102 6.71e-06

hypothetical protein; Provisional


Pssm-ID: 173146  Cd Length: 122  Bit Score: 42.57  E-value: 6.71e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446882140   7 LGQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNygqacEM-VTLSKQKKIIKTAMRFLQ 85
Cdd:PRK14683  15 LGYLGEVLIILFLKCKLYHIIKHRYRCPLGEIDIIAHKNKQLVFIEVKTSLFNK-----NIpITYKQQKSILKSAKYFIA 89

                         90
                 ....*....|....*..
gi 446882140  86 RYPSYQDFYCRFDVICF 102
Cdd:PRK14683  90 FHRKFANYSIRFDLYFF 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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