NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446887830|ref|WP_000965086|]
View 

MULTISPECIES: DUF3979 family protein [Bacillus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3979 pfam13141
Protein of unknown function (DUF3979); This family of proteins is functionally uncharacterized. ...
 8-120 3.49e-60

Protein of unknown function (DUF3979); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.


:

Pssm-ID: 432990  Cd Length: 115  Bit Score: 180.25  E-value: 3.49e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446887830    8 TLFQAAPKEEGRGGWKYIIQERNDKYEIVNEMLKNQMSVELYFNEYDEVKITLYKDGMPISTMQRIAISKVEL--DEEEE 85
Cdd:pfam13141   1 GIFQEMPLKDGPSGWKYIIEERKGAYSIVDTLSTTNKSIELWFNEYDELTITLYIENEPIFTVQRIAIHKVILinDPDEN 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 446887830   86 GIQFVLERMPSRMIRLQLKPYLALEMGPYWEVCDD 120
Cdd:pfam13141  81 SIQFVLERMPSRMIRLQWKPKLAIEMGLYWEVCDD 115
 
Name Accession Description Interval E-value
DUF3979 pfam13141
Protein of unknown function (DUF3979); This family of proteins is functionally uncharacterized. ...
 8-120 3.49e-60

Protein of unknown function (DUF3979); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.


Pssm-ID: 432990  Cd Length: 115  Bit Score: 180.25  E-value: 3.49e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446887830    8 TLFQAAPKEEGRGGWKYIIQERNDKYEIVNEMLKNQMSVELYFNEYDEVKITLYKDGMPISTMQRIAISKVEL--DEEEE 85
Cdd:pfam13141   1 GIFQEMPLKDGPSGWKYIIEERKGAYSIVDTLSTTNKSIELWFNEYDELTITLYIENEPIFTVQRIAIHKVILinDPDEN 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 446887830   86 GIQFVLERMPSRMIRLQLKPYLALEMGPYWEVCDD 120
Cdd:pfam13141  81 SIQFVLERMPSRMIRLQWKPKLAIEMGLYWEVCDD 115
 
Name Accession Description Interval E-value
DUF3979 pfam13141
Protein of unknown function (DUF3979); This family of proteins is functionally uncharacterized. ...
 8-120 3.49e-60

Protein of unknown function (DUF3979); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.


Pssm-ID: 432990  Cd Length: 115  Bit Score: 180.25  E-value: 3.49e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446887830    8 TLFQAAPKEEGRGGWKYIIQERNDKYEIVNEMLKNQMSVELYFNEYDEVKITLYKDGMPISTMQRIAISKVEL--DEEEE 85
Cdd:pfam13141   1 GIFQEMPLKDGPSGWKYIIEERKGAYSIVDTLSTTNKSIELWFNEYDELTITLYIENEPIFTVQRIAIHKVILinDPDEN 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 446887830   86 GIQFVLERMPSRMIRLQLKPYLALEMGPYWEVCDD 120
Cdd:pfam13141  81 SIQFVLERMPSRMIRLQWKPKLAIEMGLYWEVCDD 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH