NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446891262|ref|WP_000968518|]
View 

MULTISPECIES: DUF1828 domain-containing protein [Enterobacteriaceae]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1828 super family cl07454
Domain of unknown function DUF1828; This presumed domain is functionally uncharacterized.
 25-114 5.63e-08

Domain of unknown function DUF1828; This presumed domain is functionally uncharacterized.


The actual alignment was detected with superfamily member pfam08861:

Pssm-ID: 430268  Cd Length: 90  Bit Score: 49.12  E-value: 5.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446891262   25 SPFTYcDDGEHVGAFI-REVNGRYLVSDRCDALMNMEARGISL-TKKRLDEIRQLLLKEGAELNaRGEIIAWATEKDVGA 102
Cdd:pfam08861   1 TPFLD-EDGDAIQIYVkKREGDRIRLTDDGYTLMHLSYSGCDLdSGKRKELLEAILSGHGVTLE-DGELIVKATAENFPA 78

                          90
                  ....*....|..
gi 446891262  103 ITSNIIRAgILA 114
Cdd:pfam08861  79 AKHRLLQA-MLA 89
 
Name Accession Description Interval E-value
DUF1828 pfam08861
Domain of unknown function DUF1828; This presumed domain is functionally uncharacterized.
 25-114 5.63e-08

Domain of unknown function DUF1828; This presumed domain is functionally uncharacterized.


Pssm-ID: 430268  Cd Length: 90  Bit Score: 49.12  E-value: 5.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446891262   25 SPFTYcDDGEHVGAFI-REVNGRYLVSDRCDALMNMEARGISL-TKKRLDEIRQLLLKEGAELNaRGEIIAWATEKDVGA 102
Cdd:pfam08861   1 TPFLD-EDGDAIQIYVkKREGDRIRLTDDGYTLMHLSYSGCDLdSGKRKELLEAILSGHGVTLE-DGELIVKATAENFPA 78

                          90
                  ....*....|..
gi 446891262  103 ITSNIIRAgILA 114
Cdd:pfam08861  79 AKHRLLQA-MLA 89
 
Name Accession Description Interval E-value
DUF1828 pfam08861
Domain of unknown function DUF1828; This presumed domain is functionally uncharacterized.
 25-114 5.63e-08

Domain of unknown function DUF1828; This presumed domain is functionally uncharacterized.


Pssm-ID: 430268  Cd Length: 90  Bit Score: 49.12  E-value: 5.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446891262   25 SPFTYcDDGEHVGAFI-REVNGRYLVSDRCDALMNMEARGISL-TKKRLDEIRQLLLKEGAELNaRGEIIAWATEKDVGA 102
Cdd:pfam08861   1 TPFLD-EDGDAIQIYVkKREGDRIRLTDDGYTLMHLSYSGCDLdSGKRKELLEAILSGHGVTLE-DGELIVKATAENFPA 78

                          90
                  ....*....|..
gi 446891262  103 ITSNIIRAgILA 114
Cdd:pfam08861  79 AKHRLLQA-MLA 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH