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Conserved domains on  [gi|446902721|ref|WP_000979977|]
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MULTISPECIES: YmgD family protein [Gammaproteobacteria]

Protein Classification

YmgD family protein( domain architecture ID 11242952)

YmgD family protein similar to Escherichia coli protein YmgD

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YmgD pfam16456
YmgD protein; This family of proteins is found in bacteria. Proteins in this family are ...
 28-109 3.37e-49

YmgD protein; This family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length.


:

Pssm-ID: 435349  Cd Length: 82  Bit Score: 150.96  E-value: 3.37e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446902721   28 NGLPSETYITCAEANEMAKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAIDDTMRA 107
Cdd:pfam16456   1 AGLPAEFFITCAEANEMAKNDSAAVADIIARLGNAAVAARDLKIEPRPDLDADVIEHLNAVCAKDPNGLLITAIDDAMRA 80


                  ..
gi 446902721  108 IG 109
Cdd:pfam16456  81 IA 82
 
Name Accession Description Interval E-value
YmgD pfam16456
YmgD protein; This family of proteins is found in bacteria. Proteins in this family are ...
 28-109 3.37e-49

YmgD protein; This family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length.


Pssm-ID: 435349  Cd Length: 82  Bit Score: 150.96  E-value: 3.37e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446902721   28 NGLPSETYITCAEANEMAKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAIDDTMRA 107
Cdd:pfam16456   1 AGLPAEFFITCAEANEMAKNDSAAVADIIARLGNAAVAARDLKIEPRPDLDADVIEHLNAVCAKDPNGLLITAIDDAMRA 80


                  ..
gi 446902721  108 IG 109
Cdd:pfam16456  81 IA 82
 
Name Accession Description Interval E-value
YmgD pfam16456
YmgD protein; This family of proteins is found in bacteria. Proteins in this family are ...
 28-109 3.37e-49

YmgD protein; This family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length.


Pssm-ID: 435349  Cd Length: 82  Bit Score: 150.96  E-value: 3.37e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446902721   28 NGLPSETYITCAEANEMAKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAIDDTMRA 107
Cdd:pfam16456   1 AGLPAEFFITCAEANEMAKNDSAAVADIIARLGNAAVAARDLKIEPRPDLDADVIEHLNAVCAKDPNGLLITAIDDAMRA 80


                  ..
gi 446902721  108 IG 109
Cdd:pfam16456  81 IA 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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