MULTISPECIES: ogr/Delta-like zinc finger family protein [Enterobacterales]
List of domain hits
Name | Accession | Description | Interval | E-value | ||
Zn_ribbon_recom super family | cl19592 | Recombinase zinc beta ribbon domain; This short bacterial protein contains a zinc ribbon ... |
1-52 | 1.92e-19 | ||
Recombinase zinc beta ribbon domain; This short bacterial protein contains a zinc ribbon domain that is likely to be DNA-binding. This domain is found in site specific recombinase proteins. This family appears most closely related to pfam04606. The actual alignment was detected with superfamily member PRK09678: Pssm-ID: 450334 Cd Length: 72 Bit Score: 74.26 E-value: 1.92e-19
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Name | Accession | Description | Interval | E-value | ||
PRK09678 | PRK09678 | DNA-binding transcriptional regulator; Provisional |
1-52 | 1.92e-19 | ||
DNA-binding transcriptional regulator; Provisional Pssm-ID: 137468 Cd Length: 72 Bit Score: 74.26 E-value: 1.92e-19
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Ogr_Delta | pfam04606 | Ogr/Delta-like zinc finger; This is a viral family of phage zinc-binding transcriptional ... |
3-45 | 9.61e-14 | ||
Ogr/Delta-like zinc finger; This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F. This family also includes zinc fingers in recombinase proteins. Pssm-ID: 428030 Cd Length: 47 Bit Score: 58.88 E-value: 9.61e-14
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Name | Accession | Description | Interval | E-value | ||
PRK09678 | PRK09678 | DNA-binding transcriptional regulator; Provisional |
1-52 | 1.92e-19 | ||
DNA-binding transcriptional regulator; Provisional Pssm-ID: 137468 Cd Length: 72 Bit Score: 74.26 E-value: 1.92e-19
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Ogr_Delta | pfam04606 | Ogr/Delta-like zinc finger; This is a viral family of phage zinc-binding transcriptional ... |
3-45 | 9.61e-14 | ||
Ogr/Delta-like zinc finger; This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F. This family also includes zinc fingers in recombinase proteins. Pssm-ID: 428030 Cd Length: 47 Bit Score: 58.88 E-value: 9.61e-14
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Blast search parameters | ||||
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