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Conserved domains on  [gi|446906946|ref|WP_000984202|]
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MULTISPECIES: ogr/Delta-like zinc finger family protein [Enterobacterales]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Zn_ribbon_recom super family cl19592
Recombinase zinc beta ribbon domain; This short bacterial protein contains a zinc ribbon ...
1-52 1.92e-19

Recombinase zinc beta ribbon domain; This short bacterial protein contains a zinc ribbon domain that is likely to be DNA-binding. This domain is found in site specific recombinase proteins. This family appears most closely related to pfam04606.


The actual alignment was detected with superfamily member PRK09678:

Pssm-ID: 450334  Cd Length: 72  Bit Score: 74.26  E-value: 1.92e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 446906946  1 MMRCPFCRHSAHTRTSRYVSDNVKESYLQCQNIYCSATFKTHESICAVIRSP 52
Cdd:PRK09678  1 MFHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATFITYESVQRYIVKP 52
 
Name Accession Description Interval E-value
PRK09678 PRK09678
DNA-binding transcriptional regulator; Provisional
1-52 1.92e-19

DNA-binding transcriptional regulator; Provisional


Pssm-ID: 137468  Cd Length: 72  Bit Score: 74.26  E-value: 1.92e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 446906946  1 MMRCPFCRHSAHTRTSRYVSDNVKESYLQCQNIYCSATFKTHESICAVIRSP 52
Cdd:PRK09678  1 MFHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATFITYESVQRYIVKP 52
Ogr_Delta pfam04606
Ogr/Delta-like zinc finger; This is a viral family of phage zinc-binding transcriptional ...
3-45 9.61e-14

Ogr/Delta-like zinc finger; This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F. This family also includes zinc fingers in recombinase proteins.


Pssm-ID: 428030  Cd Length: 47  Bit Score: 58.88  E-value: 9.61e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 446906946   3 RCPFCRHSAHTRTSRYVSDNVKESYLQCQNIYCSATFKTHESI 45
Cdd:pfam04606  1 RCPHCGSRAHARTSRQLSATTRELYYQCQNVECGHTFVTNEEV 43
 
Name Accession Description Interval E-value
PRK09678 PRK09678
DNA-binding transcriptional regulator; Provisional
1-52 1.92e-19

DNA-binding transcriptional regulator; Provisional


Pssm-ID: 137468  Cd Length: 72  Bit Score: 74.26  E-value: 1.92e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 446906946  1 MMRCPFCRHSAHTRTSRYVSDNVKESYLQCQNIYCSATFKTHESICAVIRSP 52
Cdd:PRK09678  1 MFHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATFITYESVQRYIVKP 52
Ogr_Delta pfam04606
Ogr/Delta-like zinc finger; This is a viral family of phage zinc-binding transcriptional ...
3-45 9.61e-14

Ogr/Delta-like zinc finger; This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F. This family also includes zinc fingers in recombinase proteins.


Pssm-ID: 428030  Cd Length: 47  Bit Score: 58.88  E-value: 9.61e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 446906946   3 RCPFCRHSAHTRTSRYVSDNVKESYLQCQNIYCSATFKTHESI 45
Cdd:pfam04606  1 RCPHCGSRAHARTSRQLSATTRELYYQCQNVECGHTFVTNEEV 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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