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Conserved domains on  [gi|446931162|ref|WP_001008418|]
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MULTISPECIES: replication initiator protein A [Bacillati]

Protein Classification

replication initiator protein A( domain architecture ID 10536630)

replication initiator protein A (RepA) is a plasmid encoded protein essential for replication of multiresistance plasmids

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RepA_N pfam06970
Replication initiator protein A (RepA) N-terminus; This of family of predicted proteins ...
 14-89 9.48e-32

Replication initiator protein A (RepA) N-terminus; This of family of predicted proteins represents the N-terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids. Most proteins in this family are bacterial, but archaeal and eukaryotic members are also included.


:

Pssm-ID: 429221  Cd Length: 76  Bit Score: 111.61  E-value: 9.48e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446931162   14 YNFIRLPMVLMEDEIFESISIEAKVLYSYMLNRMGLSYKNGWIDEDGKVFIYYTMDAIKEQFNCANDKALKIINEL 89
Cdd:pfam06970   1 ESFYQLPKVLFEDERYKKLSAEAKVLYAVLLDRLELSIKNGWIDEDGRVYFIFTIEELMELLGCSKQKAIKIKKEL 76
 
Name Accession Description Interval E-value
RepA_N pfam06970
Replication initiator protein A (RepA) N-terminus; This of family of predicted proteins ...
 14-89 9.48e-32

Replication initiator protein A (RepA) N-terminus; This of family of predicted proteins represents the N-terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids. Most proteins in this family are bacterial, but archaeal and eukaryotic members are also included.


Pssm-ID: 429221  Cd Length: 76  Bit Score: 111.61  E-value: 9.48e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446931162   14 YNFIRLPMVLMEDEIFESISIEAKVLYSYMLNRMGLSYKNGWIDEDGKVFIYYTMDAIKEQFNCANDKALKIINEL 89
Cdd:pfam06970   1 ESFYQLPKVLFEDERYKKLSAEAKVLYAVLLDRLELSIKNGWIDEDGRVYFIFTIEELMELLGCSKQKAIKIKKEL 76
 
Name Accession Description Interval E-value
RepA_N pfam06970
Replication initiator protein A (RepA) N-terminus; This of family of predicted proteins ...
 14-89 9.48e-32

Replication initiator protein A (RepA) N-terminus; This of family of predicted proteins represents the N-terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids. Most proteins in this family are bacterial, but archaeal and eukaryotic members are also included.


Pssm-ID: 429221  Cd Length: 76  Bit Score: 111.61  E-value: 9.48e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446931162   14 YNFIRLPMVLMEDEIFESISIEAKVLYSYMLNRMGLSYKNGWIDEDGKVFIYYTMDAIKEQFNCANDKALKIINEL 89
Cdd:pfam06970   1 ESFYQLPKVLFEDERYKKLSAEAKVLYAVLLDRLELSIKNGWIDEDGRVYFIFTIEELMELLGCSKQKAIKIKKEL 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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