NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446932424|ref|WP_001009680|]
View 

MULTISPECIES: glycine zipper family protein [Acinetobacter]

Protein Classification

glycine zipper family protein( domain architecture ID 10601774)

uncharacterized glycine zipper family protein similar to Escherichia coli YmgG containing an OmpA-like membrane domain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SlyB super family cl42744
Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];
526-588 2.01e-03

Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG3133:

Pssm-ID: 478445  Cd Length: 152  Bit Score: 39.42  E-value: 2.01e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446932424 526 AIAGGAMTGsmLLGALAGlatGGVGVIVASGIGAYMGGVAGSTGANSMNR-EALcnqrDIVVKL 588
Cdd:COG3133   62 TVGGAVLGG--VAGSQVG---GGRGRALATVAGAVAGGVAGNAIEKGVTRtQGV----EITVRL 116
 
Name Accession Description Interval E-value
SlyB COG3133
Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];
526-588 2.01e-03

Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442367  Cd Length: 152  Bit Score: 39.42  E-value: 2.01e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446932424 526 AIAGGAMTGsmLLGALAGlatGGVGVIVASGIGAYMGGVAGSTGANSMNR-EALcnqrDIVVKL 588
Cdd:COG3133   62 TVGGAVLGG--VAGSQVG---GGRGRALATVAGAVAGGVAGNAIEKGVTRtQGV----EITVRL 116
Gly-zipper_YMGG pfam13441
YMGG-like Gly-zipper;
528-571 2.33e-03

YMGG-like Gly-zipper;


Pssm-ID: 463878 [Multi-domain]  Cd Length: 45  Bit Score: 36.32  E-value: 2.33e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 446932424  528 AGGAMTGSmLLGALAGLATGGVGVivASGIGAYMGGVAGSTGAN 571
Cdd:pfam13441   4 VGGAAIGA-AAGAAIGAAVGGGGK--GAAIGAAAGALAGGAIGA 44
 
Name Accession Description Interval E-value
SlyB COG3133
Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];
526-588 2.01e-03

Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442367  Cd Length: 152  Bit Score: 39.42  E-value: 2.01e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446932424 526 AIAGGAMTGsmLLGALAGlatGGVGVIVASGIGAYMGGVAGSTGANSMNR-EALcnqrDIVVKL 588
Cdd:COG3133   62 TVGGAVLGG--VAGSQVG---GGRGRALATVAGAVAGGVAGNAIEKGVTRtQGV----EITVRL 116
Gly-zipper_YMGG pfam13441
YMGG-like Gly-zipper;
528-571 2.33e-03

YMGG-like Gly-zipper;


Pssm-ID: 463878 [Multi-domain]  Cd Length: 45  Bit Score: 36.32  E-value: 2.33e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 446932424  528 AGGAMTGSmLLGALAGLATGGVGVivASGIGAYMGGVAGSTGAN 571
Cdd:pfam13441   4 VGGAAIGA-AAGAAIGAAVGGGGK--GAAIGAAAGALAGGAIGA 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH