NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446939356|ref|WP_001016612|]
View 

xanthine dehydrogenase iron sulfur-binding subunit XdhC [Escherichia coli]

Protein Classification

similar to xanthine dehydrogenase iron-sulfur-binding subunit( domain architecture ID 11484520)

protein similar to xanthine dehydrogenase iron-sulfur-binding subunit

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK09908 PRK09908
xanthine dehydrogenase iron sulfur-binding subunit XdhC;
1-159 3.04e-103

xanthine dehydrogenase iron sulfur-binding subunit XdhC;


:

Pssm-ID: 182139 [Multi-domain]  Cd Length: 159  Bit Score: 292.59  E-value: 3.04e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356   1 MNHSETITIECTINGMPFQLHAVPGTPLSELLREQGLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLE 80
Cdd:PRK09908   1 MNHSETITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLE 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446939356  81 GEAKGGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK 159
Cdd:PRK09908  81 GEAKGGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK 159
 
Name Accession Description Interval E-value
PRK09908 PRK09908
xanthine dehydrogenase iron sulfur-binding subunit XdhC;
1-159 3.04e-103

xanthine dehydrogenase iron sulfur-binding subunit XdhC;


Pssm-ID: 182139 [Multi-domain]  Cd Length: 159  Bit Score: 292.59  E-value: 3.04e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356   1 MNHSETITIECTINGMPFQLHAVPGTPLSELLREQGLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLE 80
Cdd:PRK09908   1 MNHSETITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLE 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446939356  81 GEAKGGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK 159
Cdd:PRK09908  81 GEAKGGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK 159
CutS COG2080
Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family [Energy production and ...
 6-154 1.15e-66

Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family [Energy production and conversion]; Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441683 [Multi-domain]  Cd Length: 155  Bit Score: 199.55  E-value: 1.15e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356   6 TITIECTINGMPFQLHAVPGTPLSELLREQ-GLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAK 84
Cdd:COG2080    1 MMMITLTVNGKPVEVDVDPDTPLLDVLRDDlGLTGTKFGCGHGQCGACTVLVDGKAVRSCLTLAVQADGKEITTIEGLAE 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356  85 GGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAkpREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLD 154
Cdd:COG2080   81 DGELHPLQQAFIEHGALQCGYCTPGMIMAAVALLD--ENPNPTEEEIREALSGNLCRCTGYVRIVRAVKR 148
4hydroxCoAred TIGR03193
4-hydroxybenzoyl-CoA reductase, gamma subunit; 4-hydroxybenzoyl-CoA reductase converts ...
 12-152 1.89e-37

4-hydroxybenzoyl-CoA reductase, gamma subunit; 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.


Pssm-ID: 132237 [Multi-domain]  Cd Length: 148  Bit Score: 125.37  E-value: 1.89e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356   12 TINGMPFQLHAVPGTPLSELLREQ-GLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLSH 90
Cdd:TIGR03193   5 TVNGRWREDAVADNMLLVDYLRDTvGLTGTKQGCDGGECGACTVLVDGRPRLACSTLAHRVAGRKVETVEGLATNGRLSR 84

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446939356   91 VQQAYAKSGAVQCGFCTPGLIMATTAMLAkpREKPLTITEIRRGLAGNLCRCTGYQMIVNTV 152
Cdd:TIGR03193  85 LQQAFHERLGTQCGFCTPGMIMAAEALLR--RNPSPSRDEIRAALAGNLCRCTGYVKIIESV 144
Fer2_2 pfam01799
[2Fe-2S] binding domain;
78-152 6.71e-28

[2Fe-2S] binding domain;


Pssm-ID: 460336 [Multi-domain]  Cd Length: 73  Bit Score: 98.66  E-value: 6.71e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446939356   78 TLEGEAKGGKLsHVQQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKPlTITEIRRGLAGNLCRCTGYQMIVNTV 152
Cdd:pfam01799   1 TIEGLAESGGE-PVQQAFAEAGAVQCGYCTPGMIMSAYALLERNPPPP-TEAEIREALSGNLCRCTGYRRIVDAV 73
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 9-62 1.79e-03

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 35.45  E-value: 1.79e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446939356   9 IECTINGMPFQLHAVPGTPLSELLREQGLLsVKQGCCVGECGACTVLVDGTAID 62
Cdd:cd00207    1 VTINVPGSGVEVEVPEGETLLDAAREAGID-IPYSCRAGACGTCKVEVVEGEVD 53
 
Name Accession Description Interval E-value
PRK09908 PRK09908
xanthine dehydrogenase iron sulfur-binding subunit XdhC;
1-159 3.04e-103

xanthine dehydrogenase iron sulfur-binding subunit XdhC;


Pssm-ID: 182139 [Multi-domain]  Cd Length: 159  Bit Score: 292.59  E-value: 3.04e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356   1 MNHSETITIECTINGMPFQLHAVPGTPLSELLREQGLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLE 80
Cdd:PRK09908   1 MNHSETITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLE 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446939356  81 GEAKGGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK 159
Cdd:PRK09908  81 GEAKGGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK 159
CutS COG2080
Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family [Energy production and ...
 6-154 1.15e-66

Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family [Energy production and conversion]; Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441683 [Multi-domain]  Cd Length: 155  Bit Score: 199.55  E-value: 1.15e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356   6 TITIECTINGMPFQLHAVPGTPLSELLREQ-GLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAK 84
Cdd:COG2080    1 MMMITLTVNGKPVEVDVDPDTPLLDVLRDDlGLTGTKFGCGHGQCGACTVLVDGKAVRSCLTLAVQADGKEITTIEGLAE 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356  85 GGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAkpREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLD 154
Cdd:COG2080   81 DGELHPLQQAFIEHGALQCGYCTPGMIMAAVALLD--ENPNPTEEEIREALSGNLCRCTGYVRIVRAVKR 148
XdhA COG4630
Xanthine dehydrogenase, Fe-S cluster and FAD-binding subunit XdhA [Nucleotide transport and ...
 12-149 2.28e-40

Xanthine dehydrogenase, Fe-S cluster and FAD-binding subunit XdhA [Nucleotide transport and metabolism];


Pssm-ID: 443668 [Multi-domain]  Cd Length: 476  Bit Score: 141.04  E-value: 2.28e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356  12 TINGMPFQLHAV-PGTPLSELLRE-QGLLSVKQGCCVGECGACTVLV----DG----TAIDSCLYLAAWAEGKEIRTLEG 81
Cdd:COG4630    4 LLNGELVELSDVpPTTTLLDWLREdRGLTGTKEGCAEGDCGACTVVVgeldDGglryRAVNACILFLPQLDGKALVTVEG 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446939356  82 EAKG-GKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAkpREKPLTITEIRRGLAGNLCRCTGYQMIV 149
Cdd:COG4630   84 LAGPdGALHPVQQAMVDHHGSQCGFCTPGFVMSLFALYE--RGPAPDRADIEDALSGNLCRCTGYRPII 150
4hydroxCoAred TIGR03193
4-hydroxybenzoyl-CoA reductase, gamma subunit; 4-hydroxybenzoyl-CoA reductase converts ...
 12-152 1.89e-37

4-hydroxybenzoyl-CoA reductase, gamma subunit; 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.


Pssm-ID: 132237 [Multi-domain]  Cd Length: 148  Bit Score: 125.37  E-value: 1.89e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356   12 TINGMPFQLHAVPGTPLSELLREQ-GLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLSH 90
Cdd:TIGR03193   5 TVNGRWREDAVADNMLLVDYLRDTvGLTGTKQGCDGGECGACTVLVDGRPRLACSTLAHRVAGRKVETVEGLATNGRLSR 84

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446939356   91 VQQAYAKSGAVQCGFCTPGLIMATTAMLAkpREKPLTITEIRRGLAGNLCRCTGYQMIVNTV 152
Cdd:TIGR03193  85 LQQAFHERLGTQCGFCTPGMIMAAEALLR--RNPSPSRDEIRAALAGNLCRCTGYVKIIESV 144
Se_dep_XDH TIGR03311
selenium-dependent xanthine dehydrogenase; Members of this protein resemble conventional ...
 28-152 1.64e-33

selenium-dependent xanthine dehydrogenase; Members of this protein resemble conventional xanthine dehydrogenase enzymes, which depend on molybdenum cofactor - molybdopterin bound to molybdate with two sulfur atoms as ligands. But all members of this family occur in species that contain markers for the biosynthesis of enzymes with a selenium-containing form of molybdenum cofactor. The member of this family from Enterococcus faecalis has been shown to act as a xanthine dehydrogenenase, and its activity if dependent on SelD (selenophosphate synthase), selenium, and molybdenum. [Purines, pyrimidines, nucleosides, and nucleotides, Other]


Pssm-ID: 132354 [Multi-domain]  Cd Length: 848  Bit Score: 124.18  E-value: 1.64e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356   28 LSELLREQ-GLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGeakggkLSHVQQ-----AYAKSGAV 101
Cdd:TIGR03311  18 LLEFLREDlRLTGVKNGCGEGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEG------LTEREKdvyawAFAKAGAV 91

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 446939356  102 QCGFCTPGLIMATTAMLAK---PREKpltitEIRRGLAGNLCRCTGYQMIVNTV 152
Cdd:TIGR03311  92 QCGFCIPGMVISAKALLDKnpnPTEA-----EIKKALKGNICRCTGYVKIIKAV 140
PRK11433 PRK11433
aldehyde oxidoreductase 2Fe-2S subunit; Provisional
 12-154 5.96e-32

aldehyde oxidoreductase 2Fe-2S subunit; Provisional


Pssm-ID: 236910 [Multi-domain]  Cd Length: 217  Bit Score: 113.33  E-value: 5.96e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356  12 TINGMPFQLHAVPGTPLSELLREQ-GLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLSH 90
Cdd:PRK11433  55 KVNGKTEQLEVDTRTTLLDALREHlHLTGTKKGCDHGQCGACTVLVNGRRLNACLTLAVMHQGAEITTIEGLGSPDNLHP 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356  91 VQQAYAKSGAVQCGFCTPGLIMATTAML----------------AKPRekpLTITEIRRGLAGNLCRCTGYQMIVNTVLD 154
Cdd:PRK11433 135 MQAAFVKHDGFQCGYCTPGQICSSVAVLkeikdgipshvtvdltAAPE---LTADEIRERMSGNICRCGAYSNILEAIED 211
PLN02906 PLN02906
xanthine dehydrogenase
 28-149 3.42e-30

xanthine dehydrogenase


Pssm-ID: 215491 [Multi-domain]  Cd Length: 1319  Bit Score: 114.80  E-value: 3.42e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356   28 LSELLREQGLLSVKQGCCVGECGACTVLV----DGT------AIDSCLYLAAWAEGKEIRTLEGEA-KGGKLSHVQQAYA 96
Cdd:PLN02906    4 LLEYLRDLGLTGTKLGCGEGGCGACTVMVshydRKTgkcvhyAVNACLAPLYSVEGMHVITVEGIGnRRDGLHPVQEALA 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 446939356   97 KSGAVQCGFCTPGLIMATTAMLAKPREKPlTITEIRRGLAGNLCRCTGYQMIV 149
Cdd:PLN02906   84 SMHGSQCGFCTPGFIMSMYALLRSSKTPP-TEEQIEECLAGNLCRCTGYRPIL 135
PLN00192 PLN00192
aldehyde oxidase
 4-150 2.63e-28

aldehyde oxidase


Pssm-ID: 215096 [Multi-domain]  Cd Length: 1344  Bit Score: 109.42  E-value: 2.63e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356    4 SETITIECTINGMPFQLHAV-PGTPLSELLREQG-LLSVKQGCCVGECGACTVL----------VDGTAIDSCLYLAAWA 71
Cdd:PLN00192    1 SSNMSLVFAVNGERFELSSVdPSTTLLEFLRTQTpFKSVKLGCGEGGCGACVVLlskydpvldqVEDFTVSSCLTLLCSV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356   72 EGKEIRTLEGEAKGGKLSH-VQQAYAKSGAVQCGFCTPGLIMATTAMLAK----PREKP------LTITEIRRGLAGNLC 140
Cdd:PLN00192   81 NGCSITTSEGLGNSKDGFHpIHKRFAGFHASQCGFCTPGMCISLFSALVNadktDRPEPpsgfskLTVVEAEKAVSGNLC 160

                         170
                  ....*....|
gi 446939356  141 RCTGYQMIVN 150
Cdd:PLN00192  161 RCTGYRPIVD 170
xanthine_xdhA TIGR02963
xanthine dehydrogenase, small subunit; Members of this protein family are the small subunit ...
 14-149 2.72e-28

xanthine dehydrogenase, small subunit; Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and [Purines, pyrimidines, nucleosides, and nucleotides, Other]


Pssm-ID: 274365 [Multi-domain]  Cd Length: 467  Bit Score: 108.52  E-value: 2.72e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356   14 NGMPFQLHAV-PGTPLSELLREQ-GLLSVKQGCCVGECGACTVLV----DGT-----AIDSCLYLAAWAEGKEIRTLEGE 82
Cdd:TIGR02963   6 NGETVTLSDVdPTRTLLDYLREDaGLTGTKEGCAEGDCGACTVVVgelvDGGklryrSVNACIQFLPSLDGKAVVTVEDL 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446939356   83 AK-GGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLaKPREKPlTITEIRRGLAGNLCRCTGYQMIV 149
Cdd:TIGR02963  86 RQpDGRLHPVQQAMVECHGSQCGFCTPGFVMSLYALY-KNSPAP-SRADIEDALQGNLCRCTGYRPIL 151
Fer2_2 pfam01799
[2Fe-2S] binding domain;
78-152 6.71e-28

[2Fe-2S] binding domain;


Pssm-ID: 460336 [Multi-domain]  Cd Length: 73  Bit Score: 98.66  E-value: 6.71e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446939356   78 TLEGEAKGGKLsHVQQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKPlTITEIRRGLAGNLCRCTGYQMIVNTV 152
Cdd:pfam01799   1 TIEGLAESGGE-PVQQAFAEAGAVQCGYCTPGMIMSAYALLERNPPPP-TEAEIREALSGNLCRCTGYRRIVDAV 73
mam_aldehyde_ox TIGR02969
aldehyde oxidase; Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, ...
 24-150 1.01e-20

aldehyde oxidase; Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.


Pssm-ID: 132014 [Multi-domain]  Cd Length: 1330  Bit Score: 87.76  E-value: 1.01e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356    24 PGTPLSELLREQ-GLLSVKQGCCVGECGACTVLVD----------GTAIDSCLYLAAWAEGKEIRTLEG-EAKGGKLSHV 91
Cdd:TIGR02969   19 PETMLLPYLRKKlRLTGTKYGCGGGGCGACTVMISrynpstksirHHPVNACLTPICSLYGAAVTTVEGiGSTRTRLHPV 98

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 446939356    92 QQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKplTITEIRRGLAGNLCRCTGYQMIVN 150
Cdd:TIGR02969   99 QERIAKCHGTQCGFCTPGMVMSMYALLRNHPEP--TLDQLTDALGGNLCRCTGYRPIID 155
PRK09800 PRK09800
putative hypoxanthine oxidase; Provisional
 7-146 2.04e-20

putative hypoxanthine oxidase; Provisional


Pssm-ID: 182084 [Multi-domain]  Cd Length: 956  Bit Score: 86.81  E-value: 2.04e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446939356   7 ITIECTINGMPFQLHAVPGTPLSELLREQGLLSVKQ---GccVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEA 83
Cdd:PRK09800   1 MIIHFTLNGAPQELTVNPGENVQKLLFNMGMHSVRNsddG--FGFAGSDAIIFNGNIVNASLLIAAQLEKADIRTAESLG 78

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446939356  84 KGGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAkpREKPLTITEIRRGLAGNLCRCTGYQ 146
Cdd:PRK09800  79 KWNELSLVQQAMVDVGVVQSGYNDPAAALIITDLLD--RIAAPTREEIDDALSGLFSRDAGWQ 139
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 9-62 1.79e-03

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 35.45  E-value: 1.79e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446939356   9 IECTINGMPFQLHAVPGTPLSELLREQGLLsVKQGCCVGECGACTVLVDGTAID 62
Cdd:cd00207    1 VTINVPGSGVEVEVPEGETLLDAAREAGID-IPYSCRAGACGTCKVEVVEGEVD 53
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
12-57 3.79e-03

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 34.42  E-value: 3.79e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 446939356   12 TINGMPFQLHAVPG-TPLSELLREQGLlSVKQGCCVGECGACTVLVD 57
Cdd:pfam00111   2 TINGKGVTIEVPDGeTTLLDAAEEAGI-DIPYSCRGGGCGTCAVKVL 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH