|
Name |
Accession |
Description |
Interval |
E-value |
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
10-380 |
0e+00 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 589.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 10 FPFQR-FTADELRHFFVWCAAHKVSDVDLTGGSPVSVSRFGRRVRCSSATLPTTLMSSLIDALFGREVIPRVLAGNPVDR 88
Cdd:TIGR02525 1 FNFGPgLTADTLRRFFVHCSRHEVSDIHLQGGSPIVVERHGRQVPASSFPLDNLELERLVDEVFGPEIKPTVKSGAPVDR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 89 TIQINGDASGRYGLKRGERIRLRSHLIQGTSGAEEKAISITMRVIPTEIPDILSMNIEPDLLEAMVCKSGLGFVCGETGS 168
Cdd:TIGR02525 81 AIQLRGDENGRYGLGRGERVRFRCNFIQATIGKLETAISLTLRVIPSDIPDLKQMGIEPDLFNSLLPAAGLGLICGETGS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 169 GKSTLCAALYCYIKKNYPNAKIVTYEDPVEYILGNENDLLPPHQAEIGRDVVSFAAGLRSAVRRNPEIIGVGEIRDNETA 248
Cdd:TIGR02525 161 GKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIGVGEIRDLETF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 249 DAAVQAGNTGHYCLSTMHTKSPGETLARILGLFPPVIRDSMAWAVLSLLQFILVQVLVRTNDGGRKAVREYIVINDELRD 328
Cdd:TIGR02525 241 QAAVLAGQSGHFCLGTLHVKSPGEAISRCLQMYPPEMREAAAFDLLSILQYIIVQRLLRTTDGKRQAVREYIVFDDSLRR 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 446947712 329 NLSGMPHAEWGHHIDAIIRQEKRRIRDQILEMYIRNEVDRREAILFIPPGEL 380
Cdd:TIGR02525 321 KLYDVDYSKWGRYIDDILRAEQRRIADQAWAMHQEGRIDEREAAEVIGAMEF 372
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
147-323 |
1.30e-97 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 288.12 E-value: 1.30e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 147 PDLLEAMVCKSGLGFVCGETGSGKSTLCAALYCYIKKN-YPNAKIVTYEDPVEYILGN-ENDLLPPHQAEIGRDVVSFAA 224
Cdd:cd19516 1 PDLVEALFPREGLVYVAGATGSGKSTLLAAIYRYILENdPPDRKIITYEDPIEFVYDGiKSKHSIIVQSQIPRHFKSFAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 225 GLRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARILGLFPPVIRDSMAWAVLSLLQFILVQV 304
Cdd:cd19516 81 AVREALRRKPSLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLFPPEERDAAAYDLLSTLRFIIVQR 160
|
170
....*....|....*....
gi 446947712 305 LVRTNDGGRKAVREYIVIN 323
Cdd:cd19516 161 LVRTTDGKRVAVREYLVFD 179
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
16-376 |
2.95e-80 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 249.62 E-value: 2.95e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 16 TADELRHFFVWCAAHKVSDVDLTGGSPVSVSRFGRRVRCSSATLPTTLMSSLIDALFGREVIPRVLAGNPVDRTIQINGD 95
Cdd:COG2805 1 MAMDLDELLKLAVEQGASDLHLTVGSPPMLRIDGELVPLDDPPLTPEDLEALLKEILTEEQRERLEEEGELDFSYSLPGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 96 AsgryglkrgeriRLRSHLIQGTSGaeekaISITMRVIPTEIPDILSMNIEPDLLEAMVCKSGLGFVCGETGSGKSTLCA 175
Cdd:COG2805 81 G------------RFRVNIFRQRGG-----VAAVLRLIPSEIPTLEELGLPPVLKELAELPRGLVLVTGPTGSGKSTTLA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 176 ALYCYIKKNYPnAKIVTYEDPVEYILGNENDLlpPHQAEIGRDVVSFAAGLRSAVRRNPEIIGVGEIRDNETADAAVQAG 255
Cdd:COG2805 144 AMIDYINETRA-KHIITIEDPIEFVHKHKKSL--INQREVGRDTPSFANALRAALREDPDVILVGEMRDLETIEAALTAA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 256 NTGHYCLSTMHTKSPGETLARILGLFPPVIRDSMAWAVLSLLQFILVQVLVRTNDG-GRKAVREYIVINDELRDNLSGMP 334
Cdd:COG2805 221 ETGHLVFATLHTNSAAQTIDRIIDVFPPEEQAQIRSQLAESLRGVISQRLLPRADGgGRVAAREILVNTPAVRNLIREGK 300
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 446947712 335 HAEWGHHIDAIIRQEKRRIRDQILEMYIRNEVDRREAILFIP 376
Cdd:COG2805 301 THQIPSLIQTGKKLGMQTMDQSLAELVKEGLITEETALAYAS 342
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
147-307 |
3.64e-33 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 124.70 E-value: 3.64e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 147 PDLLEAMVCKSGLGFVCGETGSGKSTLCAALYCYIKKnyPNAKIVTYEDPVEYILGNendllpPHQAEIGRDV-VSFAAG 225
Cdd:pfam00437 120 EALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNT--RDENIVTVEDPVEIQLEG------INQVQLNARAgVTFADL 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 226 LRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARILGLFPPvirdsmAWAVLSLLQFILVQVL 305
Cdd:pfam00437 192 LRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGALTRLQDMGVP------PFELASSLLLVIAQRL 265
|
..
gi 446947712 306 VR 307
Cdd:pfam00437 266 VR 267
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
149-280 |
1.64e-28 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 112.16 E-value: 1.64e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 149 LLEAMVCKSGLGFVCGETGSGKSTLcaaLYCYIKKNYPNAKIVTYEDPVEYilgNENDLLpphQAEIGRDV-VSFAAGLR 227
Cdd:NF041000 120 LKQLLQRRSGLILFSGPTGSGKTTT---MYSLARKLALNKQVITIEDPVEI---KEPNFL---QLQVNEKAgMTYDTLLK 190
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 446947712 228 SAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARILGL 280
Cdd:NF041000 191 AALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAGVIYRLLEL 243
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
149-307 |
1.55e-22 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 98.46 E-value: 1.55e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 149 LLEAMVCKSGLGFVCGETGSGKSTlcaALYCYIKK-NYPNAKIVTYEDPVEYILG--NENDLLPphqaEIGRDvvsFAAG 225
Cdd:PRK10436 210 FRQALQQPQGLILVTGPTGSGKTV---TLYSALQTlNTAQINICSVEDPVEIPLAgiNQTQIHP----KAGLT---FQRV 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 226 LRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARILGLFPPvirdsmAWAVLSLLQFILVQVL 305
Cdd:PRK10436 280 LRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTSETLVRLQQMGIA------RWMLASALKLVIAQRL 353
|
..
gi 446947712 306 VR 307
Cdd:PRK10436 354 VR 355
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
10-380 |
0e+00 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 589.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 10 FPFQR-FTADELRHFFVWCAAHKVSDVDLTGGSPVSVSRFGRRVRCSSATLPTTLMSSLIDALFGREVIPRVLAGNPVDR 88
Cdd:TIGR02525 1 FNFGPgLTADTLRRFFVHCSRHEVSDIHLQGGSPIVVERHGRQVPASSFPLDNLELERLVDEVFGPEIKPTVKSGAPVDR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 89 TIQINGDASGRYGLKRGERIRLRSHLIQGTSGAEEKAISITMRVIPTEIPDILSMNIEPDLLEAMVCKSGLGFVCGETGS 168
Cdd:TIGR02525 81 AIQLRGDENGRYGLGRGERVRFRCNFIQATIGKLETAISLTLRVIPSDIPDLKQMGIEPDLFNSLLPAAGLGLICGETGS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 169 GKSTLCAALYCYIKKNYPNAKIVTYEDPVEYILGNENDLLPPHQAEIGRDVVSFAAGLRSAVRRNPEIIGVGEIRDNETA 248
Cdd:TIGR02525 161 GKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIGVGEIRDLETF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 249 DAAVQAGNTGHYCLSTMHTKSPGETLARILGLFPPVIRDSMAWAVLSLLQFILVQVLVRTNDGGRKAVREYIVINDELRD 328
Cdd:TIGR02525 241 QAAVLAGQSGHFCLGTLHVKSPGEAISRCLQMYPPEMREAAAFDLLSILQYIIVQRLLRTTDGKRQAVREYIVFDDSLRR 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 446947712 329 NLSGMPHAEWGHHIDAIIRQEKRRIRDQILEMYIRNEVDRREAILFIPPGEL 380
Cdd:TIGR02525 321 KLYDVDYSKWGRYIDDILRAEQRRIADQAWAMHQEGRIDEREAAEVIGAMEF 372
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
147-323 |
1.30e-97 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 288.12 E-value: 1.30e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 147 PDLLEAMVCKSGLGFVCGETGSGKSTLCAALYCYIKKN-YPNAKIVTYEDPVEYILGN-ENDLLPPHQAEIGRDVVSFAA 224
Cdd:cd19516 1 PDLVEALFPREGLVYVAGATGSGKSTLLAAIYRYILENdPPDRKIITYEDPIEFVYDGiKSKHSIIVQSQIPRHFKSFAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 225 GLRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARILGLFPPVIRDSMAWAVLSLLQFILVQV 304
Cdd:cd19516 81 AVREALRRKPSLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLFPPEERDAAAYDLLSTLRFIIVQR 160
|
170
....*....|....*....
gi 446947712 305 LVRTNDGGRKAVREYIVIN 323
Cdd:cd19516 161 LVRTTDGKRVAVREYLVFD 179
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
16-376 |
2.95e-80 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 249.62 E-value: 2.95e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 16 TADELRHFFVWCAAHKVSDVDLTGGSPVSVSRFGRRVRCSSATLPTTLMSSLIDALFGREVIPRVLAGNPVDRTIQINGD 95
Cdd:COG2805 1 MAMDLDELLKLAVEQGASDLHLTVGSPPMLRIDGELVPLDDPPLTPEDLEALLKEILTEEQRERLEEEGELDFSYSLPGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 96 AsgryglkrgeriRLRSHLIQGTSGaeekaISITMRVIPTEIPDILSMNIEPDLLEAMVCKSGLGFVCGETGSGKSTLCA 175
Cdd:COG2805 81 G------------RFRVNIFRQRGG-----VAAVLRLIPSEIPTLEELGLPPVLKELAELPRGLVLVTGPTGSGKSTTLA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 176 ALYCYIKKNYPnAKIVTYEDPVEYILGNENDLlpPHQAEIGRDVVSFAAGLRSAVRRNPEIIGVGEIRDNETADAAVQAG 255
Cdd:COG2805 144 AMIDYINETRA-KHIITIEDPIEFVHKHKKSL--INQREVGRDTPSFANALRAALREDPDVILVGEMRDLETIEAALTAA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 256 NTGHYCLSTMHTKSPGETLARILGLFPPVIRDSMAWAVLSLLQFILVQVLVRTNDG-GRKAVREYIVINDELRDNLSGMP 334
Cdd:COG2805 221 ETGHLVFATLHTNSAAQTIDRIIDVFPPEEQAQIRSQLAESLRGVISQRLLPRADGgGRVAAREILVNTPAVRNLIREGK 300
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 446947712 335 HAEWGHHIDAIIRQEKRRIRDQILEMYIRNEVDRREAILFIP 376
Cdd:COG2805 301 THQIPSLIQTGKKLGMQTMDQSLAELVKEGLITEETALAYAS 342
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
137-324 |
1.77e-51 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 171.18 E-value: 1.77e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 137 IPDILSMNIEPDLLEAMVCKSGLGFVCGETGSGKSTLCAALYCYIKKNYPnAKIVTYEDPVEYILGNENDLLppHQAEIG 216
Cdd:cd01131 1 IPTFEELGLPPVLKDLALKPRGLVLVTGPTGSGKSTTLAAMIDYINETRS-KHIITIEDPIEFVHKHKKSLI--NQREVG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 217 RDVVSFAAGLRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARILGLFPPVIRDSMAWAVLSL 296
Cdd:cd01131 78 RDTESFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDVFPPEQQEQVRIQLASS 157
|
170 180
....*....|....*....|....*....
gi 446947712 297 LQFILVQVLVRTNDG-GRKAVREyIVIND 324
Cdd:cd01131 158 LRGVISQRLLPKKDGgGRVAAFE-ILINT 185
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
126-323 |
1.79e-41 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 149.48 E-value: 1.79e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 126 ISITMRVIPTEIPDILSMNIEPDLLE-AMVcKSGLGFVCGETGSGKSTLCAALycyIkkNYPNAK----IVTYEDPVEYI 200
Cdd:COG5008 92 VGMVLRRIETEIPTLDELGLPPVLKDlIME-KRGLVLFVGATGSGKSTTLAAM---I--DHRNENssghILTIEDPIEFV 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 201 LGNENDLLppHQAEIGRDVVSFAAGLRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARILGL 280
Cdd:COG5008 166 HKHKKSIV--TQREVGVDTESYEVALKNALRQAPDVILIGEIRDRETMEHAIAFAETGHLCLATLHANNANQALDRIINF 243
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 446947712 281 FPPVIRDSMaWAVLSL-LQFILVQVLVRTNDGGRKAVREyIVIN 323
Cdd:COG5008 244 FPEERRPQL-LMDLSLnLRAIVSQRLVPTKDGGRVAAVE-VLLN 285
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
148-323 |
2.03e-41 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 143.01 E-value: 2.03e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 148 DLLEAMVCK-SGLGFVCGETGSGKSTLcaaLYCYIKK-NYPNAKIVTYEDPVEYILGNENdllpphQAEIGRDV-VSFAA 224
Cdd:cd01129 1 ARLRRLIKRpHGLILVTGPTGSGKTTT---LYAMLRElNGPERNIITIEDPVEYQIPGIN------QSQVNEKIgLTFAD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 225 GLRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARILGLFPPvirdsmAWAVLSLLQFILVQV 304
Cdd:cd01129 72 ALRAILRQDPDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIE------PFLLASALRGVIAQR 145
|
170
....*....|....*....
gi 446947712 305 LVrtndgGRKAVREYIVIN 323
Cdd:cd01129 146 LV-----GRTAIAEVLVLD 159
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
147-307 |
3.64e-33 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 124.70 E-value: 3.64e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 147 PDLLEAMVCKSGLGFVCGETGSGKSTLCAALYCYIKKnyPNAKIVTYEDPVEYILGNendllpPHQAEIGRDV-VSFAAG 225
Cdd:pfam00437 120 EALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNT--RDENIVTVEDPVEIQLEG------INQVQLNARAgVTFADL 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 226 LRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARILGLFPPvirdsmAWAVLSLLQFILVQVL 305
Cdd:pfam00437 192 LRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGALTRLQDMGVP------PFELASSLLLVIAQRL 265
|
..
gi 446947712 306 VR 307
Cdd:pfam00437 266 VR 267
|
|
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
127-328 |
1.49e-29 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 119.53 E-value: 1.49e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 127 SITMRVIPTE--IPDILSMNIEPD---LLEAMVCKS-GLGFVCGETGSGKS-TLCAALYcYIkkNYPNAKIVTYEDPVEY 199
Cdd:COG2804 277 KVVLRILDKSaaLLDLEQLGFSPDqleRLRRLIRRPhGIILVTGPTGSGKTtTLYAALN-EL--NTPERNIITVEDPVEY 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 200 ILgnendllpPH------QAEIGrdvVSFAAGLRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGET 273
Cdd:COG2804 354 QL--------PGinqvqvNPKIG---LTFASALRSILRQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPSA 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 274 LARIL--GLFPPVIRDSmawavlslLQFILVQVLVRT-----------------------------------------ND 310
Cdd:COG2804 423 ITRLLdmGVEPFLLASS--------LLGVLAQRLVRRlcphckepyepdpeelerlglppeelapltfyrgvgcehcnGT 494
|
250 260
....*....|....*....|
gi 446947712 311 G--GRKAVREYIVINDELRD 328
Cdd:COG2804 495 GykGRTGIYELLVIDDELRE 514
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
149-280 |
1.64e-28 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 112.16 E-value: 1.64e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 149 LLEAMVCKSGLGFVCGETGSGKSTLcaaLYCYIKKNYPNAKIVTYEDPVEYilgNENDLLpphQAEIGRDV-VSFAAGLR 227
Cdd:NF041000 120 LKQLLQRRSGLILFSGPTGSGKTTT---MYSLARKLALNKQVITIEDPVEI---KEPNFL---QLQVNEKAgMTYDTLLK 190
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 446947712 228 SAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARILGL 280
Cdd:NF041000 191 AALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAGVIYRLLEL 243
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
149-307 |
1.55e-22 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 98.46 E-value: 1.55e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 149 LLEAMVCKSGLGFVCGETGSGKSTlcaALYCYIKK-NYPNAKIVTYEDPVEYILG--NENDLLPphqaEIGRDvvsFAAG 225
Cdd:PRK10436 210 FRQALQQPQGLILVTGPTGSGKTV---TLYSALQTlNTAQINICSVEDPVEIPLAgiNQTQIHP----KAGLT---FQRV 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 226 LRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLARILGLFPPvirdsmAWAVLSLLQFILVQVL 305
Cdd:PRK10436 280 LRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTSETLVRLQQMGIA------RWMLASALKLVIAQRL 353
|
..
gi 446947712 306 VR 307
Cdd:PRK10436 354 VR 355
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
148-314 |
1.92e-20 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 87.60 E-value: 1.92e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 148 DLLEAMVcKSGLGF-VCGETGSGKSTLCAALYCYIKknyPNAKIVTYEDPVEyilgnendLLPPH---------QAEIGR 217
Cdd:cd01130 3 AFLRLAV-RARKNIlISGGTGSGKTTLLNALLSFIP---PDERIVTIEDTRE--------LQLPHpnvvhlltrPGGGEK 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 218 DVVSFAAGLRSAVRRNPEIIGVGEIRDNETADaAVQAGNTGHY-CLSTMHTKSPGETLARILGLfppVIRDSMAWAVLSL 296
Cdd:cd01130 71 GEVTMADLLKAALRMRPDRIIVGEVRGGEAYD-MLQAMNTGHPgSITTIHANSAEDAIDRLATL---VLEAGVNLDEEAL 146
|
170 180
....*....|....*....|...
gi 446947712 297 LQFIL--VQVLV---RTNDGGRK 314
Cdd:cd01130 147 RRLIAsaIDVIVhvkRLGDGVRR 169
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
161-318 |
2.85e-20 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 92.07 E-value: 2.85e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 161 FVCGETGSGKSTLCAALYCYIKknyPNAKIVTYEDPVEyilgnendLLPPH---QAEIGRDVVSFAAG-------LRSAV 230
Cdd:COG0630 294 LVAGGTASGKTTLLNALLSFIP---PDAKIVTIEDTRE--------LNLPHenwISLVTRESFGGEEGdvtmfdlLKAAL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 231 RRNPEIIGVGEIRDNEtADAAVQAGNTGHYCLSTMHTKSPGETLARILGLfPPVIRDSMawavLSLLQFILVQVLVRTND 310
Cdd:COG0630 363 RQRPDYIVVGEVRGEE-AYTLFQAMATGHGVLSTFHADSVESAINRLTSP-PINVPRTL----LQALDLVVFQKRVRVGG 436
|
....*...
gi 446947712 311 GGRKAVRE 318
Cdd:COG0630 437 KRVRRVTS 444
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
148-310 |
2.62e-16 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 75.89 E-value: 2.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 148 DLLEAMVCKSGLGFVCGETGSGKSTLCAALYCYIKKNypnAKIVTYEDPVEYILGNENDLlppHQAEIGRDVvSFAAGLR 227
Cdd:cd19477 1 SAIKDGIAIGKNVIVCGGTGSGKTTYIKSILEFIPKE---ERIISIEDTEEIVFKHHKNY---TQLFFGGNI-TSADCLK 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 228 SAVRRNPEIIGVGEIRDnETADAAVQAGNTGHY-CLSTMHTKSPGETLARI------LGLFPPVIRDSMAWAVLSLLQFI 300
Cdd:cd19477 74 SCLRQRPDRIILGELRS-SEAYDFYNVLCSGHKgTLTTLHAGSSEEAFIRLan*sssNSAARNIKFESLIEGFKDLIDGI 152
|
170
....*....|
gi 446947712 301 LVQVLVRTND 310
Cdd:cd19477 153 VHINHHKQCD 162
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
162-289 |
4.05e-09 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 57.50 E-value: 4.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 162 VCGETGSGKSTLCAALYCYIKKNYPNAKIVTYEDPVEYILGNENDLLpPHQAeigrDVVSFAAGLRSAVRRNPEIIGVGE 241
Cdd:PRK13833 149 ISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVA-LHTS----DTVDMARLLKSTMRLRPDRIIVGE 223
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 446947712 242 IRDNeTADAAVQAGNTGHY-CLSTMHTKSPGETLARILGLFPPVIRDSM 289
Cdd:PRK13833 224 VRDG-AALTLLKAWNTGHPgGVTTIHSNTAMSALRRLEQLTAEASQQPM 271
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
144-280 |
6.89e-08 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 53.75 E-value: 6.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 144 NIEPDLLEAMVCKSGLgFVCGETGSGKSTLCAALYCYIKknyPNAKIVTYEDPVEYILGNENDL-LPPHQAEIGRDVVSF 222
Cdd:PRK13851 150 DLEAFLHACVVGRLTM-LLCGPTGSGKTTMSKTLISAIP---PQERLITIEDTLELVIPHENHVrLLYSKNGAGLGAVTA 225
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446947712 223 AAGLRSAVRRNPEIIGVGEIRDnetaDAA------VQAGNTGhyCLSTMHTKSPGETLARILGL 280
Cdd:PRK13851 226 EHLLQASLRMRPDRILLGEMRD----DAAwaylseVVSGHPG--SISTIHGANPVQGFKKLFSL 283
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
162-320 |
1.76e-07 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 52.43 E-value: 1.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 162 VCGETGSGKSTLCAALYCYIKKNYPNAKIVTYEDPVEYILGNENDLlpphQAEIGRDvVSFAAGLRSAVRRNPEIIGVGE 241
Cdd:PRK13894 153 VIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYV----QYHTSID-VNMTALLKTTLRMRPDRILVGE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446947712 242 IRDNETADaAVQAGNTGHY-CLSTMHTKSPGETLARILGLfppVIRDSMAWAVLSLLQFILVQVLV---RTnDGGRKaVR 317
Cdd:PRK13894 228 VRGPEALD-LLMAWNTGHEgGAATLHANNAKAGLDRLKSL---ISMHPDAPKPIEPLIGEAVHVVVhiaRT-PGGRR-IQ 301
|
...
gi 446947712 318 EYI 320
Cdd:PRK13894 302 EIL 304
|
|
| |
