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Conserved domains on  [gi|446961085|ref|WP_001038341|]
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MULTISPECIES: conjugal transfer protein TrbG [Gammaproteobacteria]

Protein Classification

PRK13744 family protein( domain architecture ID 10014399)

PRK13744 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13744 PRK13744
conjugal transfer protein TrbG; Provisional
 1-83 8.71e-54

conjugal transfer protein TrbG; Provisional


:

Pssm-ID: 139817  Cd Length: 83  Bit Score: 161.45  E-value: 8.71e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446961085  1 MNKLVSDGSVKKINYPVLYESGITPPLCEVSAPEPDAGGKRIVAYVYKSSRNTVFENPDIVKTCTVRDLKNDFVNCDEKG 80
Cdd:PRK13744  1 MNKLVSDGSVKKINYPVLYESGITPPLCEVSAPEPDAGGKRIVAYVYKSSRSTVFENPDIVKTCTVRDLKKDFVNCDEKG 80


                ...
gi 446961085 81 EGQ 83
Cdd:PRK13744 81 EGQ 83
 
Name Accession Description Interval E-value
PRK13744 PRK13744
conjugal transfer protein TrbG; Provisional
 1-83 8.71e-54

conjugal transfer protein TrbG; Provisional


Pssm-ID: 139817  Cd Length: 83  Bit Score: 161.45  E-value: 8.71e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446961085  1 MNKLVSDGSVKKINYPVLYESGITPPLCEVSAPEPDAGGKRIVAYVYKSSRNTVFENPDIVKTCTVRDLKNDFVNCDEKG 80
Cdd:PRK13744  1 MNKLVSDGSVKKINYPVLYESGITPPLCEVSAPEPDAGGKRIVAYVYKSSRSTVFENPDIVKTCTVRDLKKDFVNCDEKG 80


                ...
gi 446961085 81 EGQ 83
Cdd:PRK13744 81 EGQ 83
 
Name Accession Description Interval E-value
PRK13744 PRK13744
conjugal transfer protein TrbG; Provisional
 1-83 8.71e-54

conjugal transfer protein TrbG; Provisional


Pssm-ID: 139817  Cd Length: 83  Bit Score: 161.45  E-value: 8.71e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446961085  1 MNKLVSDGSVKKINYPVLYESGITPPLCEVSAPEPDAGGKRIVAYVYKSSRNTVFENPDIVKTCTVRDLKNDFVNCDEKG 80
Cdd:PRK13744  1 MNKLVSDGSVKKINYPVLYESGITPPLCEVSAPEPDAGGKRIVAYVYKSSRSTVFENPDIVKTCTVRDLKKDFVNCDEKG 80


                ...
gi 446961085 81 EGQ 83
Cdd:PRK13744 81 EGQ 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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