MULTISPECIES: DUF905 domain-containing protein [Enterobacteriaceae]
Protein Classification
DUF905 domain-containing protein( domain architecture ID 10532453)
uncharacterized DUF905 domain-containing protein similar to Escherichia coli YubL, YkfF and YpjL
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| DUF905 | pfam06006 | Bacterial protein of unknown function (DUF905); This family consists of several short ... |
11-77 | 2.88e-34 | ||
Bacterial protein of unknown function (DUF905); This family consists of several short hypothetical Enterobacteria proteins of unknown function. Structural analysis of the surface features of the protein YvyC has revealed a single cluster of highly conserved residues on the surface. Additionally, these residues fall into two groups which lie within the two largest of the three cavities identified over the surface. The conclusion from this is that these two cavities with, Leu 58, Glu 75, Ile 82, and Glu 83 and Pro 86, conserved, are likely to be important for the molecular function and reflect the cavities found on the surface of the FlaG proteins in pfam03646. : Pssm-ID: 368702 Cd Length: 70 Bit Score: 111.51 E-value: 2.88e-34
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| Name | Accession | Description | Interval | E-value | ||
| DUF905 | pfam06006 | Bacterial protein of unknown function (DUF905); This family consists of several short ... |
11-77 | 2.88e-34 | ||
Bacterial protein of unknown function (DUF905); This family consists of several short hypothetical Enterobacteria proteins of unknown function. Structural analysis of the surface features of the protein YvyC has revealed a single cluster of highly conserved residues on the surface. Additionally, these residues fall into two groups which lie within the two largest of the three cavities identified over the surface. The conclusion from this is that these two cavities with, Leu 58, Glu 75, Ile 82, and Glu 83 and Pro 86, conserved, are likely to be important for the molecular function and reflect the cavities found on the surface of the FlaG proteins in pfam03646. Pssm-ID: 368702 Cd Length: 70 Bit Score: 111.51 E-value: 2.88e-34
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| NHL_brat_like | cd14959 | NHL repeat domain of the Drosophila brain-tumor protein (brat) and similar proteins; ... |
13-52 | 9.41e-03 | ||
NHL repeat domain of the Drosophila brain-tumor protein (brat) and similar proteins; Drosophila brain-tumor (brat) has been identified as a tumor suppressor that negatively regulates cell proliferation during development of the Drosophila larval brain. It appears to be recruited to the 3'-untranslated region of hunchback RNA and regulates its translation by forming a complex with Pumilio (Pum) and Nanos (Nos). The NHL domain of brat appears to be involved by interacting with the RNA-binding Puf repeats of Pumilio, a sequence-specific RNA binding protein. This family also contains the Caenorhabditis elegans homolog NCL-1. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. Pssm-ID: 271329 [Multi-domain] Cd Length: 274 Bit Score: 32.63 E-value: 9.41e-03
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| Name | Accession | Description | Interval | E-value | ||
| DUF905 | pfam06006 | Bacterial protein of unknown function (DUF905); This family consists of several short ... |
11-77 | 2.88e-34 | ||
Bacterial protein of unknown function (DUF905); This family consists of several short hypothetical Enterobacteria proteins of unknown function. Structural analysis of the surface features of the protein YvyC has revealed a single cluster of highly conserved residues on the surface. Additionally, these residues fall into two groups which lie within the two largest of the three cavities identified over the surface. The conclusion from this is that these two cavities with, Leu 58, Glu 75, Ile 82, and Glu 83 and Pro 86, conserved, are likely to be important for the molecular function and reflect the cavities found on the surface of the FlaG proteins in pfam03646. Pssm-ID: 368702 Cd Length: 70 Bit Score: 111.51 E-value: 2.88e-34
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| NHL_brat_like | cd14959 | NHL repeat domain of the Drosophila brain-tumor protein (brat) and similar proteins; ... |
13-52 | 9.41e-03 | ||
NHL repeat domain of the Drosophila brain-tumor protein (brat) and similar proteins; Drosophila brain-tumor (brat) has been identified as a tumor suppressor that negatively regulates cell proliferation during development of the Drosophila larval brain. It appears to be recruited to the 3'-untranslated region of hunchback RNA and regulates its translation by forming a complex with Pumilio (Pum) and Nanos (Nos). The NHL domain of brat appears to be involved by interacting with the RNA-binding Puf repeats of Pumilio, a sequence-specific RNA binding protein. This family also contains the Caenorhabditis elegans homolog NCL-1. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. Pssm-ID: 271329 [Multi-domain] Cd Length: 274 Bit Score: 32.63 E-value: 9.41e-03
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