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Conserved domains on  [gi|446980031|ref|WP_001057287|]
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MULTISPECIES: conjugal transfer protein TrbD [Enterobacteriaceae]

Protein Classification

conjugal transfer protein TrbD( domain architecture ID 10014375)

conjugal transfer protein TrbD is a DUF2689 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13724 PRK13724
conjugal transfer protein TrbD; Provisional
 1-65 1.53e-38

conjugal transfer protein TrbD; Provisional


:

Pssm-ID: 237482  Cd Length: 65  Bit Score: 123.52  E-value: 1.53e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446980031   1 MNMRNINVITALSVPGKTVSDDFIHAVLSNCATRIVLPAPEKFGSESLPDNFNMAAVGVMKKGMS 65
Cdd:PRK13724   1 MNMRNINVITARSVPDKSVSDDFMHAVLSNCTTRIVLPAPKEFSSESLPHNFNMAAVGVMKKGMS 65
 
Name Accession Description Interval E-value
PRK13724 PRK13724
conjugal transfer protein TrbD; Provisional
 1-65 1.53e-38

conjugal transfer protein TrbD; Provisional


Pssm-ID: 237482  Cd Length: 65  Bit Score: 123.52  E-value: 1.53e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446980031   1 MNMRNINVITALSVPGKTVSDDFIHAVLSNCATRIVLPAPEKFGSESLPDNFNMAAVGVMKKGMS 65
Cdd:PRK13724   1 MNMRNINVITARSVPDKSVSDDFMHAVLSNCTTRIVLPAPKEFSSESLPHNFNMAAVGVMKKGMS 65
DUF2689 pfam10894
Protein of unknown function (DUF2689); Members in this family of proteins are annotated as ...
 1-57 3.02e-07

Protein of unknown function (DUF2689); Members in this family of proteins are annotated as TrbD however currently no function is known.


Pssm-ID: 313958  Cd Length: 57  Bit Score: 43.95  E-value: 3.02e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 446980031    1 MNMRNInvitaLSVPGKTVSDDFIHAVLSNCATRIVLPAPEKFGSESLPDNFNMAAV 57
Cdd:pfam10894   4 MNIRNV-----ISVPDESVQDDFVKYVISNCTTKIILSGRREYNFSRQEYNFSVTGM 55
 
Name Accession Description Interval E-value
PRK13724 PRK13724
conjugal transfer protein TrbD; Provisional
 1-65 1.53e-38

conjugal transfer protein TrbD; Provisional


Pssm-ID: 237482  Cd Length: 65  Bit Score: 123.52  E-value: 1.53e-38
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446980031   1 MNMRNINVITALSVPGKTVSDDFIHAVLSNCATRIVLPAPEKFGSESLPDNFNMAAVGVMKKGMS 65
Cdd:PRK13724   1 MNMRNINVITARSVPDKSVSDDFMHAVLSNCTTRIVLPAPKEFSSESLPHNFNMAAVGVMKKGMS 65
DUF2689 pfam10894
Protein of unknown function (DUF2689); Members in this family of proteins are annotated as ...
 1-57 3.02e-07

Protein of unknown function (DUF2689); Members in this family of proteins are annotated as TrbD however currently no function is known.


Pssm-ID: 313958  Cd Length: 57  Bit Score: 43.95  E-value: 3.02e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 446980031    1 MNMRNInvitaLSVPGKTVSDDFIHAVLSNCATRIVLPAPEKFGSESLPDNFNMAAV 57
Cdd:pfam10894   4 MNIRNV-----ISVPDESVQDDFVKYVISNCTTKIILSGRREYNFSRQEYNFSVTGM 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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