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Conserved domains on  [gi|446984212|ref|WP_001061468|]
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MULTISPECIES: ABC transporter permease [Bacillus]

Protein Classification

ABC transporter permease( domain architecture ID 10003369)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0055085|GO:0016020
PubMed:  25750732|24638992|31571164|27273632|26517919|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NosY COG1277
ABC-type transport system involved in multi-copper enzyme maturation, permease component ...
 81-195 3.02e-07

ABC-type transport system involved in multi-copper enzyme maturation, permease component [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440888 [Multi-domain]  Cd Length: 201  Bit Score: 49.43  E-value: 3.02e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446984212  81 LGIMILVISMMGVIQTDKANGMLAFILTRPVTVTSYIGGKIVSNYLMVAFSVTIGYFTSYLYVNYFFTAVP--FLHMITG 158
Cdd:COG1277   60 LLPLLAPALGMDAISGERESGTLELLLTLPISRWEIVLGKFLGALLVLLLALLITFLLALLLGLLLFGSPPpdLGAILGF 139

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 446984212 159 LIFYLIWVLFIVSFTTMISAIFYSQGIIALISIVFLL 195
Cdd:COG1277  140 YLGLLLLGLAFLAIGLFISALTRNQIVAAILAIALWL 176
 
Name Accession Description Interval E-value
NosY COG1277
ABC-type transport system involved in multi-copper enzyme maturation, permease component ...
 81-195 3.02e-07

ABC-type transport system involved in multi-copper enzyme maturation, permease component [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440888 [Multi-domain]  Cd Length: 201  Bit Score: 49.43  E-value: 3.02e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446984212  81 LGIMILVISMMGVIQTDKANGMLAFILTRPVTVTSYIGGKIVSNYLMVAFSVTIGYFTSYLYVNYFFTAVP--FLHMITG 158
Cdd:COG1277   60 LLPLLAPALGMDAISGERESGTLELLLTLPISRWEIVLGKFLGALLVLLLALLITFLLALLLGLLLFGSPPpdLGAILGF 139

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 446984212 159 LIFYLIWVLFIVSFTTMISAIFYSQGIIALISIVFLL 195
Cdd:COG1277  140 YLGLLLLGLAFLAIGLFISALTRNQIVAAILAIALWL 176
 
Name Accession Description Interval E-value
NosY COG1277
ABC-type transport system involved in multi-copper enzyme maturation, permease component ...
 81-195 3.02e-07

ABC-type transport system involved in multi-copper enzyme maturation, permease component [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440888 [Multi-domain]  Cd Length: 201  Bit Score: 49.43  E-value: 3.02e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446984212  81 LGIMILVISMMGVIQTDKANGMLAFILTRPVTVTSYIGGKIVSNYLMVAFSVTIGYFTSYLYVNYFFTAVP--FLHMITG 158
Cdd:COG1277   60 LLPLLAPALGMDAISGERESGTLELLLTLPISRWEIVLGKFLGALLVLLLALLITFLLALLLGLLLFGSPPpdLGAILGF 139

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 446984212 159 LIFYLIWVLFIVSFTTMISAIFYSQGIIALISIVFLL 195
Cdd:COG1277  140 YLGLLLLGLAFLAIGLFISALTRNQIVAAILAIALWL 176
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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