|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
102-358 |
3.03e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.01 E-value: 3.03e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 102 LKADLYQLEGLTDVAREKLLEALTYSEDSL-LILGLAELDSELENYQAAIQAYAQLDNRsiyEQTGISTYQRIGFAYAQL 180
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVeAHLALGNLYRRRGEYDRAIRIHQKLLER---DPDRAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 181 GKFETATEFLEKALELEYDDLTA-FELANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEHQVQEALRIAKQ 259
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEAlRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 260 GLEKNPFETRLLLAASQFSYELHDASGAENYLLAAKEDAEDTEEILLRLATIYLEQERYEDILDL---QSEEPENLLTKW 336
Cdd:COG2956 170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELlrkALELDPSDDLLL 249
|
250 260
....*....|....*....|..
gi 446988686 337 MIARSYQEMDDLDTAYEHYQEL 358
Cdd:COG2956 250 ALADLLERKEGLEAALALLERQ 271
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
67-328 |
9.43e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 79.77 E-value: 9.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 67 LNLAAIASEDGQIEEAFTYLEEIQADSDWYVSSLALKADLYQLEGLTDVAREKLLEALTYSEDSLLIL-GLAELDSELEN 145
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALlELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 146 YQAAIQAYAQLDNRSIYEqtgISTYQRIGFAYAQLGKFETATEFLEKALELEYDDLTA-FELANLYFDQEEYQKATLYFK 224
Cdd:COG2956 92 LDRAEELLEKLLELDPDD---AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAyCELAELYLEQGDYDEAIEALE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 225 QLDTISPDFEGYEYGYSQALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLAAKEDAEDTEEi 304
Cdd:COG2956 169 KALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL- 247
|
250 260
....*....|....*....|....
gi 446988686 305 LLRLATIYLEQERYEDILDLQSEE 328
Cdd:COG2956 248 LLALADLLERKEGLEAALALLERQ 271
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
8-264 |
1.89e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 75.92 E-value: 1.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 8 LQALEEQDLTKAEHYFAKALENDSS--DLLYELATYLEGIGFYPQAKEIYLKIVE---DFPEVHLNLAAIASEDGQIEEA 82
Cdd:COG2956 16 LNYLLNGQPDKAIDLLEEALELDPEtvEAHLALGNLYRRRGEYDRAIRIHQKLLErdpDRAEALLELAQDYLKAGLLDRA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 83 FTYLEEIQADSDWYVSSLALKADLYQLEGLTDVAREKLLEALTYS-EDSLLILGLAELDSELENYQAAIQAYAQLDNrsi 161
Cdd:COG2956 96 EELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGpENAHAYCELAELYLEQGDYDEAIEALEKALK--- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 162 YEQTGISTYQRIGFAYAQLGKFETATEFLEKALELEYDDLTAFE-LANLYFDQEEYQKATLYFKQLDTISPDFEGYEYgY 240
Cdd:COG2956 173 LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPrLAELYEKLGDPEEALELLRKALELDPSDDLLLA-L 251
|
250 260
....*....|....*....|....
gi 446988686 241 SQALHKEHQVQEALRIAKQGLEKN 264
Cdd:COG2956 252 ADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
174-409 |
1.78e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 73.22 E-value: 1.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 174 GFAYAQLGKFETATEFLEKALELEYDDLTA-FELANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEHQVQE 252
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAhLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 253 ALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLAAKEDAEDTEEILLRLATIYLEQERYEDILDL----QSEE 328
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAlekaLKLD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 329 PENLLTKWMIARSYQEMDDLDTAYEHYQELTGDLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDDVQMQELFER 408
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADL 254
|
.
gi 446988686 409 L 409
Cdd:COG2956 255 L 255
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
144-394 |
1.00e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 70.91 E-value: 1.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 144 ENYQAAIQAYAQLDNrsIYEQTgISTYQRIGFAYAQLGKFETATEFLEKALELEYDDLTA-FELANLYFDQEEYQKATLY 222
Cdd:COG2956 22 GQPDKAIDLLEEALE--LDPET-VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAlLELAQDYLKAGLLDRAEEL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 223 FKQLDTISPDFEGYEYGYSQALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLAAKEDAEDTE 302
Cdd:COG2956 99 LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 303 EILLRLATIYLEQERYED----ILDLQSEEPENLLTKWMIARSYQEMDDLDTAYEHYQELTgDLKDNPEFLEHYIYLLRE 378
Cdd:COG2956 179 RALLLLAELYLEQGDYEEaiaaLERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL-ELDPSDDLLLALADLLER 257
|
250
....*....|....*.
gi 446988686 379 LGHFEEAKVHAHTYLK 394
Cdd:COG2956 258 KEGLEAALALLERQLR 273
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
10-401 |
8.82e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 70.11 E-value: 8.82e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 10 ALEEQDLTKAEHYFAKALENDSSDL--LYELATYLEGIGFYPQAKEIYLKIVEDFPE---VHLNLAAIASEDGQIEEAFT 84
Cdd:TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFpaAANLARIDIQEGNPDDAIQRFEKVLTIDPKnlrAILALAGLYLRTGNEEEAVA 554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 85 YLEEiqadsdwyvsslALKADLYQLEGltdvareKLLEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLdnrsiyeq 164
Cdd:TIGR02917 555 WLEK------------AAELNPQEIEP-------ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLML-------- 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 165 tgistyqriGFAYAQLGKFETATEFLEKALELEYDDLTAF-ELANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQA 243
Cdd:TIGR02917 608 ---------GRAQLAAGDLNKAVSSFKKLLALQPDSALALlLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 244 LHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLAAKEdAEDTEEILLRLATIYL----EQERYE 319
Cdd:TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK-RAPSSQNAIKLHRALLasgnTAEAVK 757
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 320 DILDLQSEEPENLLTKWMIARSYQEMDDLDTAYEHYQELTGDLKDNPEFLEHYIYLLRELGHfEEAKVHAHTYLKLVPDD 399
Cdd:TIGR02917 758 TLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNI 836
|
..
gi 446988686 400 VQ 401
Cdd:TIGR02917 837 PA 838
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
100-392 |
8.49e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.86 E-value: 8.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 100 LALKADLYQLEGLTDVAREKLLEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLDNRSIYEQTGISTYQRIGFAYAQ 179
Cdd:COG3914 11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 180 LGKFETATEFLEKALELEYDDLTA-FELANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEHQVQEALRIAK 258
Cdd:COG3914 91 LGRYEEALALYRRALALNPDNAEAlFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 259 QGLEKNPfetrlllaasqfsyelhdasgaenyllaakedaeDTEEILLRLATIYLEQERYED-------ILDLQSEEPE- 330
Cdd:COG3914 171 RALELDP----------------------------------DNAEALNNLGNALQDLGRLEEaiaayrrALELDPDNADa 216
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446988686 331 --NLLtkwMIARSYQEMDDLDTAYEHYQELTGDLKDNPEFLEHYIYLLRELGHFEEAKVHAHTY 392
Cdd:COG3914 217 hsNLL---FALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLV 277
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
56-298 |
6.10e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 59.25 E-value: 6.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 56 LKIVEDFPEVHLNLAAIASEDGQIEEAFTYLEEIQADSDWYVSSLALKADLYQLEGLTDVAREKLLEALTYSEDSLLIL- 134
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALn 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 135 GLAELDSELENYQAAIQAYAQLDNRSIYEqtgISTYQRIGFAYAQLGKFETATEFLEKALELEYDDLTA-FELANLYFDQ 213
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDD---AEALYNLGLALLELGRYDEAIEAYERALELDPDDADAlYNLGIALEKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 214 EEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLA 293
Cdd:COG0457 158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
|
....*
gi 446988686 294 AKEDA 298
Cdd:COG0457 238 LALYQ 242
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
203-401 |
1.76e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 59.62 E-value: 1.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 203 AFELANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEHQVQEALRIAKQGL---------EKNPFETRLLLA 273
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALaageaaaaaAALLLLAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 274 ASQFSYELHDASGAENYLLAAKEDAEDTEEILLRLATIYLEQERYED-------ILDLQseePENLLTKWMIARSYQEMD 346
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEalaalrrALALN---PDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446988686 347 DLDTAYEHYQELTGDLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDDVQ 401
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
169-401 |
2.31e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.71 E-value: 2.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 169 TYQRIGFAYAQLGKFETATEFLEKALELEYDDLTA-FELANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKE 247
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEAlYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 248 HQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLAAKEDAEDTEEILLRLATIYLEQERYEDILDLQSE 327
Cdd:COG0457 90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446988686 328 EPENLLTKWMIARSYQEMDDLDTAYEHYQELTGDLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDDVQ 401
Cdd:COG0457 170 LEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQY 243
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
5-172 |
9.38e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 54.23 E-value: 9.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 5 QQMLQALEEQDLTKAEHYFAKALE--NDSSDLLYELATYLEGIGFYPQAKEIYLKIVE---DFPEVHLNLAAIASEDGQI 79
Cdd:COG3914 83 LAALLLQALGRYEEALALYRRALAlnPDNAEALFNLGNLLLALGRLEEALAALRRALAlnpDFAEAYLNLGEALRRLGRL 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 80 EEAFTYLEE-IQADSDwYVSSLALKADLYQLEGLTDVAREKLLEALTYSED-----SLLILGLAELdSELENYQAAIQAY 153
Cdd:COG3914 163 EEAIAALRRaLELDPD-NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDnadahSNLLFALRQA-CDWEVYDRFEELL 240
|
170
....*....|....*....
gi 446988686 154 AQLDNRSIYEQTGISTYQR 172
Cdd:COG3914 241 AALARGPSELSPFALLYLP 259
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
127-265 |
5.86e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 48.65 E-value: 5.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 127 SEDSLLILGLAELDSELENYQAAIQAYAQLDNRsiyEQTGISTYQRIGFAYAQLGKFETATEFLEKALELEYDDLTA-FE 205
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALEL---DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEArLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 206 LANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEHQVQEALRIAKQGLEKNP 265
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
186-307 |
1.73e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.92 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 186 ATEFLEKALELEYDDLTA-FELANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEHQVQEALRIAKQGLEKN 264
Cdd:COG4235 2 AIARLRQALAANPNDAEGwLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 446988686 265 PFETRLLLAASQFSYELHDASGAENYLLAAKEDA-EDTEEILLR 307
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLpADAPARLLE 125
|
|
| MamA |
NF040959 |
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ... |
63-197 |
1.80e-06 |
|
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.
Pssm-ID: 468889 [Multi-domain] Cd Length: 204 Bit Score: 48.14 E-value: 1.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 63 PEVHLNLAAIASEDGQIEEAFTYLEEIQADSDWYVSSLALKADLYQLEGLTDVAREKLLEALTYSEDSLLI---LGLAeL 139
Cdd:NF040959 71 VEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLKIKDYEKAVEDLEEALEEKPDNFNLnyrLGLA-L 149
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 446988686 140 DSeLENYQAAIQAYaqldNRSI-YEQTGISTYQRIGFAYAQLGKFETATEFLEKALELE 197
Cdd:NF040959 150 DG-LGQYDKAIEAF----QKALeLDPNEIKYHQAIGFMYVQKGDHETAAEHFKKAMELE 203
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
168-300 |
2.01e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.11 E-value: 2.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 168 STYQRIGFAYAQLGKFETATEFLEKALELEYDDLTAFE-LANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHK 246
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFAlLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 446988686 247 EHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLAAKEDAED 300
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
170-276 |
4.37e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.77 E-value: 4.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 170 YQRIGFAYAQLGKFETATEFLEKALELEYDDLTA-FELANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEH 248
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADAlLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
|
90 100
....*....|....*....|....*...
gi 446988686 249 QVQEALRIAKQGLEKNPFETRLLLAASQ 276
Cdd:COG4235 100 DYAEAIAAWQKLLALLPADAPARLLEAS 127
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
56-400 |
4.56e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.93 E-value: 4.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 56 LKIVEDFPEVHLNLAAIASEDGQIEEAFTYLEEIQADSDWYVSSLALKADLYQLEGLTDVARE---KLLEALTYSEDSLL 132
Cdd:TIGR02917 152 LAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAayrKAIALRPNNIAVLL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 133 ILGLAELdsELENYQaaiQAYAQLDN-RSIYEQTGISTYQRIGFAYaQLGKFETATEFLEKALELEYDDLTAFELANL-Y 210
Cdd:TIGR02917 232 ALATILI--EAGEFE---EAEKHADAlLKKAPNSPLAHYLKALVDF-QKKNYEDARETLQDALKSAPEYLPALLLAGAsE 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 211 FDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENY 290
Cdd:TIGR02917 306 YQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEY 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 291 LLAAKEDAEDTEEILLRLATIYLEQERYED-ILDLQSE---EPENLLTKWMIARSYQEMDDLDTAYEHYQELTGDLKDNP 366
Cdd:TIGR02917 386 LAKATELDPENAAARTQLGISKLSQGDPSEaIADLETAaqlDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465
|
330 340 350
....*....|....*....|....*....|....*.
gi 446988686 367 EFLEH--YIYLLRelGHFEEAKVHAHTYLKLVPDDV 400
Cdd:TIGR02917 466 SLHNLlgAIYLGK--GDLAKAREAFEKALSIEPDFF 499
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
11-227 |
4.77e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 47.69 E-value: 4.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 11 LEEQDLTKAEHYFAKALENDSSD--LLYELATYLEGIGFYPQAKEIYLKIVE---DFPEVHLNLAAIASEDGQIEEAFTY 85
Cdd:COG0457 19 RRLGRYEEAIEDYEKALELDPDDaeALYNLGLAYLRLGRYEEALADYEQALEldpDDAEALNNLGLALQALGRYEEALED 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 86 LEEIQADSDWYVSSLALKADLYQLEGLTDVAREKLLEALTYSEDSLLIL-GLAELDSELENYQAAIQAYAQLDNRSIYEQ 164
Cdd:COG0457 99 YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALyNLGIALEKLGRYEEALELLEKLEAAALAAL 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446988686 165 TGISTYQRIGFAYAQLGKFETATEFLEKALELEYDDLTAFELANLYFDQEEYQKATLYFKQLD 227
Cdd:COG0457 179 LAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALY 241
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
26-267 |
6.39e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 47.31 E-value: 6.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 26 ALENDSSDLLYELATYLEGIGFYPQAKEIY---LKIVEDFPEVHLNLAAIASEDGQIEEAFTYLEEIQADSDWYVSSLAL 102
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYekaLELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 103 KADLYQLEGLTDVAREKLLEALTYSEDSLLIL-GLAELDSELENYQAAIQAYAQLDNrsiYEQTGISTYQRIGFAYAQLG 181
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALyNLGLALLELGRYDEAIEAYERALE---LDPDDADALYNLGIALEKLG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 182 KFETATEFLEKALELEYDDLTAFELANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEHQVQEALRIAKQGL 261
Cdd:COG0457 159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
|
....*.
gi 446988686 262 EKNPFE 267
Cdd:COG0457 239 ALYQYR 244
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
204-320 |
6.42e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.57 E-value: 6.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 204 FELANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHD 283
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110
....*....|....*....|....*....|....*..
gi 446988686 284 ASGAENYLLAAKEDAEDTEEILLRLATIYLEQERYED 320
Cdd:COG4783 88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
8-320 |
1.75e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 46.44 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 8 LQALEEQDLTKAEHYFAKALENDSSDLL-YELATYL-EGIGFYPQAKEIYLKIVEDFPE----VHLNLAAIASEDGQIEE 81
Cdd:COG3071 24 LLALAEGRYARAEKLLSKAAEHSEAPLLaYLLAARAaQALGDYERRDEYLAQALELAPEaelaVLLTRAELLLDQGQAEQ 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 82 AFTYLEEIQADSDWYVSSLALKADLYQLEGLTDVAREKL-----LEALTYSEDSLLILGLAE--LDSELENYQAAIQAYA 154
Cdd:COG3071 104 ALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLpalrkHKALSAEEAQALERRAYLglLRQAARDAEALKALWK 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 155 QLDNRSIYEQTGISTYQRigfAYAQLGKFETATEFLEKALELEYDDltafELANLYfdqeeyqkatlyfkqldtispdfe 234
Cdd:COG3071 184 ALPRAERRDPELAAAYAR---ALIALGDHDEAERLLREALKRQWDP----RLVRLY------------------------ 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 235 gyeygysqALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLAAKEDAEDTeEILLRLATIYLE 314
Cdd:COG3071 233 --------GRLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSA-EAYAELARLLEQ 303
|
....*.
gi 446988686 315 QERYED 320
Cdd:COG3071 304 LGDPEE 309
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
173-401 |
4.06e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.84 E-value: 4.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 173 IGFAYAQLGKFETATEFLEKALELEYDDLTAFE--LANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEHQV 250
Cdd:TIGR02917 96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLalRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 251 QEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLAAKEDAEDTEEILLRLATIYLEQERYED-------ILD 323
Cdd:TIGR02917 176 DEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEaekhadaLLK 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 324 LQSEEPENLLTKWMIARSYQEMDDldtAYEHYQELtgdLKDNPEFLEHYIYL---LRELGHFEEAKVHAHTYLKLVPDDV 400
Cdd:TIGR02917 256 KAPNSPLAHYLKALVDFQKKNYED---ARETLQDA---LKSAPEYLPALLLAgasEYQLGNLEQAYQYLNQILKYAPNSH 329
|
.
gi 446988686 401 Q 401
Cdd:TIGR02917 330 Q 330
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
269-399 |
5.01e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.87 E-value: 5.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 269 RLLLAASQFSYELHDASGAENYLLAAKEDAEDTEEILLRLATIYLEQERYED----ILDLQSEEPENLLTKWMIARSYQE 344
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEaivlLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 446988686 345 MDDLDTAYEHYQELTGDLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDD 399
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
176-265 |
6.79e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 41.31 E-value: 6.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 176 AYAQLGKFETATEFLEKALELEYDDLTAF-ELANLYFDQEEYQKAtLYFKQLDTISPDFEGYEYGYSQALHKEHQVQEAL 254
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALnNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 446988686 255 RIAKQGLEKNP 265
Cdd:COG3063 80 AYLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
116-267 |
9.89e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 42.64 E-value: 9.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 116 AREKLLEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLDNRSIYEQTGISTYQRIGFAYAQLGKFETATEFLEKALE 195
Cdd:COG5010 3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446988686 196 LEYDDLTA-FELANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEHQVQEALRIAKQGLEKNPFE 267
Cdd:COG5010 83 LDPNNPELyYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
64-200 |
1.10e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.10 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 64 EVHLNLAAIASEDGQIEEAFTYLEEIQADSDWYVSSLALKADLYQLEGLTDVAREKLLEALT-YSEDSLLILGLAELDSE 142
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALElDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 446988686 143 LENYQAAIQAYAQLDNRSIYEqtgISTYQRIGFAYAQLGKFETATEFLEKALELEYDD 200
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEH---PEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
241-399 |
1.30e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 43.75 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 241 SQALHKEHQVQEALRIAKQGLEKNPFETRLLLAasQFSYELHDASGAENYLLAAKEDAEDTEEILLRLATIYLEQERYED 320
Cdd:COG3071 60 AQALGDYERRDEYLAQALELAPEAELAVLLTRA--ELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEE 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 321 ILDL----------QSEEPENLLTKWMIARSYQEMDDLDTAYEHYQELTGDLKDNPEFLEHYIYLLRELGHFEEAKVHAH 390
Cdd:COG3071 138 LLELlpalrkhkalSAEEAQALERRAYLGLLRQAARDAEALKALWKALPRAERRDPELAAAYARALIALGDHDEAERLLR 217
|
....*....
gi 446988686 391 TYLKLVPDD 399
Cdd:COG3071 218 EALKRQWDP 226
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
236-358 |
1.36e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.72 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 236 YEYGYSQALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLAAKEDAEDTEEILLRLATIYLEQ 315
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 446988686 316 ERYEDILDL----QSEEPENLLTKWMIARSYQEMDDLDTAYEHYQEL 358
Cdd:COG4783 86 GDYDEALALlekaLKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
243-403 |
1.54e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 43.83 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 243 ALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHdasGAENYLLAAKEDAEDTEEILLRLATIYLEQERYEDIL 322
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAA---LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 323 DLQSEEPENLLtkwmiarsyQEMDDLDTAYEHYQELtgdLKDNPEFLEHYIYL---LRELGHFEEAKVHAHTYLKLVPDD 399
Cdd:COG3914 78 AALLELAALLL---------QALGRYEEALALYRRA---LALNPDNAEALFNLgnlLLALGRLEEALAALRRALALNPDF 145
|
....
gi 446988686 400 VQMQ 403
Cdd:COG3914 146 AEAY 149
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
5-124 |
3.70e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.56 E-value: 3.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 5 QQMLQALEEQDLTKAEHYFAKALENDSSD--LLYELATYLEGIGFYPQAKEIYLKIVE---DFPEVHLNLAAIASEDGQI 79
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKALELDPDNpeAFALLGEILLQLGDLDEAIVLLHEALEldpDEPEARLNLGLALLKAGDY 88
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 446988686 80 EEAFTYLEEIQADSDWYVSSLALKADLYQLEGLTDVAREKLLEAL 124
Cdd:COG4783 89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
97-233 |
4.44e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.18 E-value: 4.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 97 VSSLALKADLYQLEGLTDVAREKLLEALTYSEDSLLIL-GLAELDSELENYQAAIQAY---AQLDNRSIYeqtgisTYQR 172
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFaLLGEILLQLGDLDEAIVLLheaLELDPDEPE------ARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446988686 173 IGFAYAQLGKFETATEFLEKALELEYDDLTA-FELANLYFDQEEYQKATLYFKQLDTISPDF 233
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEHPEAyLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
11-94 |
5.47e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 5.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 11 LEEQDLTKAEHYFAKALE--NDSSDLLYELATYLEGIGFYPQAKEIYLKIVE---DFPEVHLNLAAIASEDGQIEEAFTY 85
Cdd:COG4235 28 LRLGRYDEALAAYEKALRldPDNADALLDLAEALLAAGDTEEAEELLERALAldpDNPEALYLLGLAAFQQGDYAEAIAA 107
|
....*....
gi 446988686 86 LEEIQADSD 94
Cdd:COG4235 108 WQKLLALLP 116
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
229-385 |
6.15e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 41.15 E-value: 6.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 229 ISPDFEGYEYGYSQALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLAAKEDAEDTEEILLRL 308
Cdd:COG0457 3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 309 ATIYLEQERYEDILDLQSE----EPENLLTKWMIARSYQEMDDLDTAYEHYQELTGDLKDNPEFLEHYIYLLRELGHFEE 384
Cdd:COG0457 83 GLALQALGRYEEALEDYDKalelDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
|
.
gi 446988686 385 A 385
Cdd:COG0457 163 A 163
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
327-401 |
9.82e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 9.82e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446988686 327 EEPENLLTKWMIARSYQEMDDLDTAYEHYQELTGDLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDDVQ 401
Cdd:COG4235 12 ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPE 86
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
247-358 |
2.45e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.51 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 247 EHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYL-LAAKEDAEDTEEILLRLATIYLEQERYEDILD-- 323
Cdd:COG3071 29 EGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLaQALELAPEAELAVLLTRAELLLDQGQAEQALAtl 108
|
90 100 110
....*....|....*....|....*....|....*..
gi 446988686 324 --LQSEEPENLLTKWMIARSYQEMDDLDTAYEHYQEL 358
Cdd:COG3071 109 eaLRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPAL 145
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
10-91 |
2.49e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.07 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 10 ALEEQDLTKAEHYFAKALEND--SSDLLYELATYLEGIGFYPQAKEI--YLKIVEDFPEVHLNLAAIASEDGQIEEAFTY 85
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDpdNADALNNLGLLLLEQGRYDEAIALekALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
....*.
gi 446988686 86 LEEIQA 91
Cdd:COG3063 82 LERALE 87
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
293-409 |
6.37e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 36.52 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 293 AAKEDAEDTEeILLRLATIYLEQERYEDILDLQSE----EPENLLTKWMIARSYQEMDDLDTAYEHYQELTGDLKDNPEF 368
Cdd:COG4235 9 ALAANPNDAE-GWLLLGRAYLRLGRYDEALAAYEKalrlDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 446988686 369 LEHYIYLLRELGHFEEAKVHAHTYLKLVPDDVQMQELFERL 409
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
95-265 |
7.49e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 37.59 E-value: 7.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 95 WYVSSLALKADLYQLEGLTDVAREKLLEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLDNRSIYEQTGISTYQRIG 174
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 175 FAYAQLGKFETATEFLEKALELEYDDLTAF-ELANLYFDQEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEHQVQEA 253
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAEAYnNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160
|
170
....*....|..
gi 446988686 254 LRIAKQGLEKNP 265
Cdd:COG4785 161 IADLEKALELDP 172
|
|
| PRK12370 |
PRK12370 |
HilA/EilA family virulence transcriptional regulator; |
176-265 |
8.72e-03 |
|
HilA/EilA family virulence transcriptional regulator;
Pssm-ID: 237080 [Multi-domain] Cd Length: 553 Bit Score: 38.29 E-value: 8.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 176 AYAQLGKFE------TATEFLEKALELEYDDLTAFELANLYFD-QEEYQKATLYFKQLDTISPDFEGYEYGYSQALHKEH 248
Cdd:PRK12370 307 SMAQMGIFDkqnamiKAKEHAIKATELDHNNPQALGLLGLINTiHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAG 386
|
90
....*....|....*..
gi 446988686 249 QVQEALRIAKQGLEKNP 265
Cdd:PRK12370 387 QLEEALQTINECLKLDP 403
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
11-195 |
9.14e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 37.68 E-value: 9.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 11 LEEQDLTKAEHYFAKALE--NDSSDLLYELATYLEGIGFYPQAKEIYLKIVE---DFPEVHLNLAAIASEDGQIEEAFTY 85
Cdd:COG0457 53 LRLGRYEEALADYEQALEldPDDAEALNNLGLALQALGRYEEALEDYDKALEldpDDAEALYNLGLALLELGRYDEAIEA 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446988686 86 LEEIQADSDWYVSSLALKADLYQLEGLTDVARE---KLLEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLDNRSIY 162
Cdd:COG0457 133 YERALELDPDDADALYNLGIALEKLGRYEEALElleKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
170 180 190
....*....|....*....|....*....|...
gi 446988686 163 EQTGISTYQRIGFAYAQLGKFETATEFLEKALE 195
Cdd:COG0457 213 ILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| |
