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Conserved domains on  [gi|447029890|ref|WP_001107146|]
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MULTISPECIES: histidine--tRNA ligase [Salmonella]

Protein Classification

histidine--tRNA ligase( domain architecture ID 11414782)

histidine--tRNA ligase (HisRS) is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HisS COG0124
Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Histidyl-tRNA ...
2-424 0e+00

Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Histidyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


:

Pssm-ID: 439894 [Multi-domain]  Cd Length: 422  Bit Score: 651.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   2 AKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEvtDVVEKEMYTFEDRNGDSLTLR 81
Cdd:COG0124    1 MMKIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFQEIRTPIFEYTELFARKIGE--DIVEKEMYTFEDRGGRSLTLR 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  82 PEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGIsEHV 161
Cdd:COG0124   79 PEGTAPVARAVAEHGNELPFPFKLYYIGPVFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADLLKALGL-KDF 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 162 SLELNSIGSLEARAnyrDALVAFLE-----QHQETLDEDCKRRMYTNPLR-VLDSKNPDVQALLNDAPALGDYLDDDSRE 235
Cdd:COG0124  158 TLEINSRGLPEERA---EALLRYLDkldkiGHEDVLDEDSQRRLETNPLRaILDSKGPDCQEVLADAPKLLDYLGEEGLA 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 236 HFAGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLL 315
Cdd:COG0124  235 HFEEVLELLDALGIPYVIDPRLVRGLDYYTGTVFEIVTDGLGAQGSVCGGGRYDGLVEQLGGPPTPAVGFAIGLERLLLL 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 316 VQAVNPEFIASPVVDIYLVAAGAQTQSAAMTLAERLRDEmpGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADG 395
Cdd:COG0124  315 LEELGLLPAAEPPPDVYVVPLGEEARAEALKLAQELRAA--GIRVELDLGGRKLKKQLKYADKSGAPFVLILGEDELANG 392
                        410       420
                 ....*....|....*....|....*....
gi 447029890 396 TVVVKDLRSGEQTAVAQDSVAAHLRTLLG 424
Cdd:COG0124  393 TVTLKDLATGEQETVPLDELVEYLKELLA 421
 
Name Accession Description Interval E-value
HisS COG0124
Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Histidyl-tRNA ...
2-424 0e+00

Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Histidyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439894 [Multi-domain]  Cd Length: 422  Bit Score: 651.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   2 AKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEvtDVVEKEMYTFEDRNGDSLTLR 81
Cdd:COG0124    1 MMKIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFQEIRTPIFEYTELFARKIGE--DIVEKEMYTFEDRGGRSLTLR 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  82 PEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGIsEHV 161
Cdd:COG0124   79 PEGTAPVARAVAEHGNELPFPFKLYYIGPVFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADLLKALGL-KDF 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 162 SLELNSIGSLEARAnyrDALVAFLE-----QHQETLDEDCKRRMYTNPLR-VLDSKNPDVQALLNDAPALGDYLDDDSRE 235
Cdd:COG0124  158 TLEINSRGLPEERA---EALLRYLDkldkiGHEDVLDEDSQRRLETNPLRaILDSKGPDCQEVLADAPKLLDYLGEEGLA 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 236 HFAGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLL 315
Cdd:COG0124  235 HFEEVLELLDALGIPYVIDPRLVRGLDYYTGTVFEIVTDGLGAQGSVCGGGRYDGLVEQLGGPPTPAVGFAIGLERLLLL 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 316 VQAVNPEFIASPVVDIYLVAAGAQTQSAAMTLAERLRDEmpGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADG 395
Cdd:COG0124  315 LEELGLLPAAEPPPDVYVVPLGEEARAEALKLAQELRAA--GIRVELDLGGRKLKKQLKYADKSGAPFVLILGEDELANG 392
                        410       420
                 ....*....|....*....|....*....
gi 447029890 396 TVVVKDLRSGEQTAVAQDSVAAHLRTLLG 424
Cdd:COG0124  393 TVTLKDLATGEQETVPLDELVEYLKELLA 421
hisS TIGR00442
histidyl-tRNA synthetase; This model finds a histidyl-tRNA synthetase in every completed ...
6-412 0e+00

histidyl-tRNA synthetase; This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273080 [Multi-domain]  Cd Length: 404  Bit Score: 633.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890    6 QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGT 85
Cdd:TIGR00442   1 QKPRGTRDFLPEEMIKWQYIEETIREVFERYGFKEIRTPIFEYTELFKRKVGEETDIVSKEMYTFKDKGGRSLTLRPEGT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   86 AGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGIsEHVSLEL 165
Cdd:TIGR00442  81 APVARAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAADILKELGL-KDFTLEI 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  166 NSIGSLEARANYRDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHFAGLCKLLD 245
Cdd:TIGR00442 160 NSLGILEGRLEYREALIRYLDKHKDKLGEDSVRRLEKNPLRILDSKNEKIQELLKNAPKILDFLCEESRAHFEELKELLD 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  246 AAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFIA 325
Cdd:TIGR00442 240 ALGIPYKIDPSLVRGLDYYTGTVFEFVTDDLGAQGSICGGGRYDGLVEELGGPPTPAVGFAIGIERLILLLEELGLIPPP 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  326 SPVVDIYLVAAGAQTQSAAMTLAERLRDEmpGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSG 405
Cdd:TIGR00442 320 SKKPDVYVVPLGEEAELEALKLAQKLRKA--GIRVEVDLGGRKLKKQLKYADKLGARFALIIGEDELENGTVTLKDLETG 397

                  ....*..
gi 447029890  406 EQTAVAQ 412
Cdd:TIGR00442 398 EQETVPL 404
syh CHL00201
histidine-tRNA synthetase; Provisional
1-407 5.41e-145

histidine-tRNA synthetase; Provisional


Pssm-ID: 164576 [Multi-domain]  Cd Length: 430  Bit Score: 419.69  E-value: 5.41e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   1 MAKnIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTL 80
Cdd:CHL00201   1 MAK-IQAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITL 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  81 RPEGTAGCVRAGIEHGLLY-NQEQRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGISE 159
Cdd:CHL00201  80 RPEGTAGIVRAFIENKMDYhSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNELQVKN 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 160 HVsLELNSIGSLEARANYRDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHFAG 239
Cdd:CHL00201 160 LI-LDINSIGKLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSLESTEHFYD 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 240 LCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQav 319
Cdd:CHL00201 239 VCTYLNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTPAVGCAIGLERLLLIAK-- 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 320 NPEFIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMpgVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVV 399
Cdd:CHL00201 317 DNIILPKQSIDVYIATQGLKAQKKGWEIIQFLEKQN--IKFELDLSSSNFHKQIKQAGKKRAKACIILGDNEIMDNCITI 394

                 ....*...
gi 447029890 400 KDLRSGEQ 407
Cdd:CHL00201 395 KWLDEQVQ 402
HisRS-like_core cd00773
Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. ...
18-317 6.91e-105

Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.


Pssm-ID: 238396 [Multi-domain]  Cd Length: 261  Bit Score: 311.07  E-value: 6.91e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  18 ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRaigEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGL 97
Cdd:cd00773    1 EAALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLR---KSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLL 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  98 LYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGIsEHVSLELNSIGSLEARANy 177
Cdd:cd00773   78 SLPLPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGL-KDFQIKINHRGILDGIAG- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 178 rdaLVAFLEQHQEtldedckrrmytnplrvldsknpdvqallndapALGDYLDDDSREHFAGLCKLLDAAG--IAYTVNQ 255
Cdd:cd00773  156 ---LLEDREEYIE---------------------------------RLIDKLDKEALAHLEKLLDYLEALGvdIKYSIDL 199
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 447029890 256 RLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQ 317
Cdd:cd00773  200 SLVRGLDYYTGIVFEAVADGLGAQGSIAGGGRYDGLLEEFGGEDVPAVGFAIGLERLLLALE 261
tRNA-synt_His pfam13393
Histidyl-tRNA synthetase; This is a family of class II aminoacyl-tRNA synthetase-like and ATP ...
10-312 2.82e-39

Histidyl-tRNA synthetase; This is a family of class II aminoacyl-tRNA synthetase-like and ATP phosphoribosyltransferase regulatory subunits.


Pssm-ID: 433170 [Multi-domain]  Cd Length: 309  Bit Score: 143.11  E-value: 2.82e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   10 GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDvvekEMYTFEDRNGDSLTLRPEGTAGCV 89
Cdd:pfam13393   1 GIRDLLPPEARRIEELRRRLLDLFRSWGYELVMPPLLEYLDSLLTGTGADLD----QTFKLVDQSGRLLGLRADITPQVA 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   90 RAgIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGIsEHVSLELNSIG 169
Cdd:pfam13393  77 RI-DAHRLNRPGPLRLCYAGSVLRTRPKGLGRSREPLQVGAELIGHAGIEADAEIISLLLEALAAAGV-PGVTLDLGHVG 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  170 -------SLEARANYRDALVAFLEQHQETLDEDCKRRMYTNP-----LRVLDSKNPDVQALLNDAPAL-GDYLDDDSREH 236
Cdd:pfam13393 155 lvralleAAGLSEALEEALRAALQRKDAAELAELAAEAGLPPalrraLLALPDLYGGPEVLDEARAALpGLPALQEALDE 234
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 447029890  237 FAGLCKLLDAAG--IAYTVNQRLVRGLDYYNRTVFEWVTnsLGSQGTVCAGGRYDGLVEQLgGRATPAVGFAMGLERL 312
Cdd:pfam13393 235 LEALAALLEALGdgVRLTFDLAELRGYEYYTGIVFAAYA--PGVGEPLARGGRYDDLGAAF-GRARPATGFSLDLEAL 309
 
Name Accession Description Interval E-value
HisS COG0124
Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Histidyl-tRNA ...
2-424 0e+00

Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Histidyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439894 [Multi-domain]  Cd Length: 422  Bit Score: 651.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   2 AKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEvtDVVEKEMYTFEDRNGDSLTLR 81
Cdd:COG0124    1 MMKIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFQEIRTPIFEYTELFARKIGE--DIVEKEMYTFEDRGGRSLTLR 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  82 PEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGIsEHV 161
Cdd:COG0124   79 PEGTAPVARAVAEHGNELPFPFKLYYIGPVFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADLLKALGL-KDF 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 162 SLELNSIGSLEARAnyrDALVAFLE-----QHQETLDEDCKRRMYTNPLR-VLDSKNPDVQALLNDAPALGDYLDDDSRE 235
Cdd:COG0124  158 TLEINSRGLPEERA---EALLRYLDkldkiGHEDVLDEDSQRRLETNPLRaILDSKGPDCQEVLADAPKLLDYLGEEGLA 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 236 HFAGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLL 315
Cdd:COG0124  235 HFEEVLELLDALGIPYVIDPRLVRGLDYYTGTVFEIVTDGLGAQGSVCGGGRYDGLVEQLGGPPTPAVGFAIGLERLLLL 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 316 VQAVNPEFIASPVVDIYLVAAGAQTQSAAMTLAERLRDEmpGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADG 395
Cdd:COG0124  315 LEELGLLPAAEPPPDVYVVPLGEEARAEALKLAQELRAA--GIRVELDLGGRKLKKQLKYADKSGAPFVLILGEDELANG 392
                        410       420
                 ....*....|....*....|....*....
gi 447029890 396 TVVVKDLRSGEQTAVAQDSVAAHLRTLLG 424
Cdd:COG0124  393 TVTLKDLATGEQETVPLDELVEYLKELLA 421
hisS TIGR00442
histidyl-tRNA synthetase; This model finds a histidyl-tRNA synthetase in every completed ...
6-412 0e+00

histidyl-tRNA synthetase; This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273080 [Multi-domain]  Cd Length: 404  Bit Score: 633.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890    6 QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGT 85
Cdd:TIGR00442   1 QKPRGTRDFLPEEMIKWQYIEETIREVFERYGFKEIRTPIFEYTELFKRKVGEETDIVSKEMYTFKDKGGRSLTLRPEGT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   86 AGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGIsEHVSLEL 165
Cdd:TIGR00442  81 APVARAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAADILKELGL-KDFTLEI 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  166 NSIGSLEARANYRDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHFAGLCKLLD 245
Cdd:TIGR00442 160 NSLGILEGRLEYREALIRYLDKHKDKLGEDSVRRLEKNPLRILDSKNEKIQELLKNAPKILDFLCEESRAHFEELKELLD 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  246 AAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFIA 325
Cdd:TIGR00442 240 ALGIPYKIDPSLVRGLDYYTGTVFEFVTDDLGAQGSICGGGRYDGLVEELGGPPTPAVGFAIGIERLILLLEELGLIPPP 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  326 SPVVDIYLVAAGAQTQSAAMTLAERLRDEmpGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSG 405
Cdd:TIGR00442 320 SKKPDVYVVPLGEEAELEALKLAQKLRKA--GIRVEVDLGGRKLKKQLKYADKLGARFALIIGEDELENGTVTLKDLETG 397

                  ....*..
gi 447029890  406 EQTAVAQ 412
Cdd:TIGR00442 398 EQETVPL 404
syh CHL00201
histidine-tRNA synthetase; Provisional
1-407 5.41e-145

histidine-tRNA synthetase; Provisional


Pssm-ID: 164576 [Multi-domain]  Cd Length: 430  Bit Score: 419.69  E-value: 5.41e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   1 MAKnIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTL 80
Cdd:CHL00201   1 MAK-IQAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITL 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  81 RPEGTAGCVRAGIEHGLLY-NQEQRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGISE 159
Cdd:CHL00201  80 RPEGTAGIVRAFIENKMDYhSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNELQVKN 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 160 HVsLELNSIGSLEARANYRDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSREHFAG 239
Cdd:CHL00201 160 LI-LDINSIGKLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSLESTEHFYD 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 240 LCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQav 319
Cdd:CHL00201 239 VCTYLNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTPAVGCAIGLERLLLIAK-- 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 320 NPEFIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMpgVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVV 399
Cdd:CHL00201 317 DNIILPKQSIDVYIATQGLKAQKKGWEIIQFLEKQN--IKFELDLSSSNFHKQIKQAGKKRAKACIILGDNEIMDNCITI 394

                 ....*...
gi 447029890 400 KDLRSGEQ 407
Cdd:CHL00201 395 KWLDEQVQ 402
HisRS-like_core cd00773
Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. ...
18-317 6.91e-105

Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.


Pssm-ID: 238396 [Multi-domain]  Cd Length: 261  Bit Score: 311.07  E-value: 6.91e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  18 ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRaigEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGL 97
Cdd:cd00773    1 EAALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLR---KSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLL 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  98 LYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGIsEHVSLELNSIGSLEARANy 177
Cdd:cd00773   78 SLPLPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGL-KDFQIKINHRGILDGIAG- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 178 rdaLVAFLEQHQEtldedckrrmytnplrvldsknpdvqallndapALGDYLDDDSREHFAGLCKLLDAAG--IAYTVNQ 255
Cdd:cd00773  156 ---LLEDREEYIE---------------------------------RLIDKLDKEALAHLEKLLDYLEALGvdIKYSIDL 199
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 447029890 256 RLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQ 317
Cdd:cd00773  200 SLVRGLDYYTGIVFEAVADGLGAQGSIAGGGRYDGLLEEFGGEDVPAVGFAIGLERLLLALE 261
Gly_His_Pro_Ser_Thr_tRS_core cd00670
Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic ...
18-317 4.45e-48

Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.


Pssm-ID: 238359 [Multi-domain]  Cd Length: 235  Bit Score: 164.10  E-value: 4.45e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  18 ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIgeVTDVVEKEMYTFEDRN----GDSLTLRPEGTAGCVRAGI 93
Cdd:cd00670    1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGG--HLDGYRKEMYTFEDKGrelrDTDLVLRPAACEPIYQIFS 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  94 EHGLLY-NQEQRLWYIGPMFRHERPQ---KGRYRQFHQLGAEVFGLQG--PDIDAELIMLTARWWRALGisEHVSLELNS 167
Cdd:cd00670   79 GEILSYrALPLRLDQIGPCFRHEPSGrrgLMRVREFRQVEYVVFGEPEeaEEERREWLELAEEIARELG--LPVRVVVAD 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 168 IGSLEARANyrdalvafleqhqetldedckrrmytnplrvldsknpdvqallndapalgdyldddsrehfaglcklldaa 247
Cdd:cd00670  157 DPFFGRGGK----------------------------------------------------------------------- 165
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 248 giaytvnqrlvRGLDYYNRTVFEWVTNSL--GSQGTVCAGGRYDGLVEQ---------LGGRATPAVGFAMGLERLVLLV 316
Cdd:cd00670  166 -----------RGLDAGRETVVEFELLLPlpGRAKETAVGSANVHLDHFgasfkidedGGGRAHTGCGGAGGEERLVLAL 234

                 .
gi 447029890 317 Q 317
Cdd:cd00670  235 L 235
hisZ_biosyn_reg TIGR00443
ATP phosphoribosyltransferase, regulatory subunit; Apparant second copies of histidyl-tRNA ...
13-317 7.05e-45

ATP phosphoribosyltransferase, regulatory subunit; Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. [Amino acid biosynthesis, Histidine family]


Pssm-ID: 273081 [Multi-domain]  Cd Length: 313  Bit Score: 158.16  E-value: 7.05e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   13 DYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEqtplFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAG 92
Cdd:TIGR00443   2 DLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLE----YLDTLSAGSGILNEDLFKLFDQLGRVLGLRPDMTAPIARLV 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   93 IEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGISE------HVSL--E 164
Cdd:TIGR00443  78 STRLRDRPLPLRLCYAGNVFRTNESGGGRSREFTQAGVELIGAGGPAADAEVIALLIEALKALGLKDfkielgHVGLvrA 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  165 L--NSIGSLEARANYRDAL----VAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDV----QALLNDAPALGdYLDDDSR 234
Cdd:TIGR00443 158 LleEAGLPEEAREALREALarkdLVALEELVAELGLSPEVRERLLALPRLRGDGEEVleeaRALAGSETAEA-ALDELEA 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  235 ehfagLCKLLDAAGI--AYTVNQRLVRGLDYYNRTVFEWVTNSLGSqgTVCAGGRYDGLVEQLgGRATPAVGFAMGLERL 312
Cdd:TIGR00443 237 -----VLELLEARGVeeYISLDLGLVRGYHYYTGLIFEGYAPGLGA--PLAGGGRYDELLGRF-GRPLPATGFALNLERL 308

                  ....*
gi 447029890  313 VLLVQ 317
Cdd:TIGR00443 309 LEALT 313
PLN02530 PLN02530
histidine-tRNA ligase
9-414 1.56e-43

histidine-tRNA ligase


Pssm-ID: 178145 [Multi-domain]  Cd Length: 487  Bit Score: 158.75  E-value: 1.56e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   9 RGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGE-VTDvvekEMYTFEDRNGDSLTLRPEGTAG 87
Cdd:PLN02530  74 KGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEeITD----QLYNFEDKGGRRVALRPELTPS 149
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  88 CVRAGIEHGllynQEQRL---WY-IGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGI-SEHVS 162
Cdd:PLN02530 150 LARLVLQKG----KSLSLplkWFaIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRVGItSSDVG 225
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 163 LELNSIGSLEA---RANYRDALVAF------------LEQHQETLDE-DCKRRMYTNPLRVLDSKN-PDVQALLndaPAL 225
Cdd:PLN02530 226 IKVSSRKVLQAvlkSYGIPEESFAPvcvivdkleklpREEIEKELDTlGVSEEAIEGILDVLSLKSlDDLEALL---GAD 302
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 226 GDYLDDDSRehfagLCKLLDAAGIA--YTVNQRLVRGLDYYNRTVFEWVTNSlGSQGTVCAGGRYDGLVEQLGGRATPAV 303
Cdd:PLN02530 303 SEAVADLKQ-----LFSLAEAYGYQdwLVFDASVVRGLAYYTGIVFEGFDRA-GKLRAICGGGRYDRLLSTFGGEDTPAC 376
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 304 GFAMGLERLVLLVQ--AVNPEFiaSPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNhgGGNFKKQFARADKWGA 381
Cdd:PLN02530 377 GFGFGDAVIVELLKekGLLPEL--PHQVDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLE--PKKLKWVFKHAERIGA 452
                        410       420       430
                 ....*....|....*....|....*....|...
gi 447029890 382 RIALVLGESEVADGTVVVKDLRSGEQTAVAQDS 414
Cdd:PLN02530 453 KRLVLVGASEWERGMVRVKDLSSGEQTEVKLDE 485
hisZ PRK12292
ATP phosphoribosyltransferase regulatory subunit; Provisional
10-354 2.06e-40

ATP phosphoribosyltransferase regulatory subunit; Provisional


Pssm-ID: 237043 [Multi-domain]  Cd Length: 391  Bit Score: 148.09  E-value: 2.06e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  10 GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGevtDVVEKEMYTFEDR-NGDSLTLRPEGTAGC 88
Cdd:PRK12292   8 GIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGG---AILDLRTFKLVDQlSGRTLGLRPDMTAQI 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  89 VRAgIEHGLLYNQE-QRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGISE------HV 161
Cdd:PRK12292  85 ARI-AATRLANRPGpLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKALGLPNftldlgHV 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 162 SLeLNSI-----GSLEARANYRDALVAF----LEQHQETLDEDCKR------RMYtNPLRVLDsknpDVQALLNDAPALG 226
Cdd:PRK12292 164 GL-FRALleaagLSEELEEVLRRALANKdyvaLEELVLDLSEELRDallalpRLR-GGREVLE----EARKLLPSLPIKR 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 227 DyLDDdsrehFAGLCKLLDAAGIAYTVNQRL--VRGLDYYNRTVFEWVTNSLGSQgtVCAGGRYDGLVEQLgGRATPAVG 304
Cdd:PRK12292 238 A-LDE-----LEALAEALEKYGYGIPLSLDLglLRHLDYYTGIVFEGYVDGVGNP--IASGGRYDDLLGRF-GRARPATG 308
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|
gi 447029890 305 FAMGLERLVLLVQAVNPefiasPVVDIYLVAAGAQTQSAAMTLAERLRDE 354
Cdd:PRK12292 309 FSLDLDRLLELQLELPV-----EARKDLVIAPDSEALAAALAAAQELRKK 353
tRNA-synt_His pfam13393
Histidyl-tRNA synthetase; This is a family of class II aminoacyl-tRNA synthetase-like and ATP ...
10-312 2.82e-39

Histidyl-tRNA synthetase; This is a family of class II aminoacyl-tRNA synthetase-like and ATP phosphoribosyltransferase regulatory subunits.


Pssm-ID: 433170 [Multi-domain]  Cd Length: 309  Bit Score: 143.11  E-value: 2.82e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   10 GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDvvekEMYTFEDRNGDSLTLRPEGTAGCV 89
Cdd:pfam13393   1 GIRDLLPPEARRIEELRRRLLDLFRSWGYELVMPPLLEYLDSLLTGTGADLD----QTFKLVDQSGRLLGLRADITPQVA 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   90 RAgIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGIsEHVSLELNSIG 169
Cdd:pfam13393  77 RI-DAHRLNRPGPLRLCYAGSVLRTRPKGLGRSREPLQVGAELIGHAGIEADAEIISLLLEALAAAGV-PGVTLDLGHVG 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  170 -------SLEARANYRDALVAFLEQHQETLDEDCKRRMYTNP-----LRVLDSKNPDVQALLNDAPAL-GDYLDDDSREH 236
Cdd:pfam13393 155 lvralleAAGLSEALEEALRAALQRKDAAELAELAAEAGLPPalrraLLALPDLYGGPEVLDEARAALpGLPALQEALDE 234
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 447029890  237 FAGLCKLLDAAG--IAYTVNQRLVRGLDYYNRTVFEWVTnsLGSQGTVCAGGRYDGLVEQLgGRATPAVGFAMGLERL 312
Cdd:pfam13393 235 LEALAALLEALGdgVRLTFDLAELRGYEYYTGIVFAAYA--PGVGEPLARGGRYDDLGAAF-GRARPATGFSLDLEAL 309
HisZ COG3705
ATP phosphoribosyltransferase regulatory subunit HisZ [Amino acid transport and metabolism];
15-318 1.41e-38

ATP phosphoribosyltransferase regulatory subunit HisZ [Amino acid transport and metabolism];


Pssm-ID: 442919 [Multi-domain]  Cd Length: 312  Bit Score: 141.08  E-value: 1.41e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  15 LPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDvveKEMYTFEDRNGDSLTLRPEGTAGCVRAGIE 94
Cdd:COG3705    1 LPEEAARKEELRRRLLDVFRSWGYELVEPPLLEYLDSLLTGSGADLD---LQTFKLVDQLGRTLGLRPDMTPQVARIAAT 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  95 HglLYNQE--QRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGIsEHVSLELNSIG--- 169
Cdd:COG3705   78 R--LANRPgpLRLCYAGNVFRTRPSGLGRSREFLQAGAELIGHAGLEADAEVIALALEALKAAGL-EDFTLDLGHVGlfr 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 170 ----SLEARANYRDALVAFLEQ----------HQETLDEDCKRRMY-----TNPLRVLDsknpDVQALLNDAPALgdyld 230
Cdd:COG3705  155 alleALGLSEEQREELRRALARkdaveleellAELGLSEELAEALLalpelYGGEEVLA----RARALLLDAAIR----- 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 231 dDSREHFAGLCKLLDAAGIA--YTVNQRLVRGLDYYNRTVFEWVTNSLGsqGTVCAGGRYDGLVEQLGgRATPAVGFAMG 308
Cdd:COG3705  226 -AALDELEALAEALAARGPDvrLTFDLSELRGYDYYTGIVFEAYAPGVG--DPLARGGRYDGLLAAFG-RARPATGFSLD 301
                        330
                 ....*....|
gi 447029890 309 LERLVLLVQA 318
Cdd:COG3705  302 LDRLLRALPA 311
PRK12420 PRK12420
histidyl-tRNA synthetase; Provisional
6-415 1.51e-38

histidyl-tRNA synthetase; Provisional


Pssm-ID: 237097 [Multi-domain]  Cd Length: 423  Bit Score: 143.72  E-value: 1.51e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   6 QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLF--KRAIGevtDVVEKEMYTFEDRNGDSLTLRPE 83
Cdd:PRK12420   5 RNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMssKYGGG---DEILKEIYTLTDQGKRDLALRYD 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  84 GTAGCVRAgiehgLLYNQEQRLWY----IGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGISe 159
Cdd:PRK12420  82 LTIPFAKV-----VAMNPNIRLPFkryeIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRLNLE- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 160 hVSLELNSIGSLearANYRDALVAFLEQHQE---TLD--EDCKRRMYTNPLRVLDSKNPDVQALLNDAPALGDYLDDDSR 234
Cdd:PRK12420 156 -VTIQYNNRKLL---NGILQAIGIPTELTSDvilSLDkiEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSIADFK 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 235 EHFAG------------LCKLLDAAGIA--YTVNQRLVRGLDYYNRTVFEW------VTNSLGSqgtvcaGGRYDGLVEQ 294
Cdd:PRK12420 232 EAFNNplvaegvnelqqLQQYLIALGINenCIFNPFLARGLTMYTGTVYEIflkdgsITSSIGS------GGRYDNIIGA 305
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 295 LGG--RATPAVGFAMGLErlvLLVQAVNPEFIASPVVDIYLVAAGAQTQSAAMtlAERLRdEMPGVKLMTNHGGGNFKKQ 372
Cdd:PRK12420 306 FRGddMNYPTVGISFGLD---VIYTALSQKETISSTADVFIIPLGTELQCLQI--AQQLR-STTGLKVELELAGRKLKKA 379
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|...
gi 447029890 373 FARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSV 415
Cdd:PRK12420 380 LNYANKENIPYVLIIGEEEVSTGTVMLRNMKEGSEVKVPLSSL 422
class_II_aaRS-like_core cd00768
Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA ...
21-173 5.27e-38

Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.


Pssm-ID: 238391 [Multi-domain]  Cd Length: 211  Bit Score: 136.86  E-value: 5.27e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  21 IWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEvtdvvEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHglLYN 100
Cdd:cd00768    1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHE-----PKDLLPVGAENEEDLYLRPTLEPGLVRLFVSH--IRK 73
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 447029890 101 QEQRLWYIGPMFRHERPQKG--RYRQFHQLGAEVFGLQGPD--IDAELIMLTARWWRALGISEHVSLELNSIGSLEA 173
Cdd:cd00768   74 LPLRLAEIGPAFRNEGGRRGlrRVREFTQLEGEVFGEDGEEasEFEELIELTEELLRALGIKLDIVFVEKTPGEFSP 150
tRNA-synt_2b pfam00587
tRNA synthetase class II core domain (G, H, P, S and T); tRNA-synt_2b is a family of largely ...
68-320 1.32e-35

tRNA synthetase class II core domain (G, H, P, S and T); tRNA-synt_2b is a family of largely threonyl-tRNA members.


Pssm-ID: 395469 [Multi-domain]  Cd Length: 181  Bit Score: 129.45  E-value: 1.32e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   68 YTFEDRNGDSLTLRPEGTAGCVRAGIEHGL-LYNQEQRLWYIGPMFRHERP--QKG--RYRQFHQLGAEVFGLQG--PDI 140
Cdd:pfam00587   1 YKVEDENGDELALKPTNEPGHTLLFREEGLrSKDLPLKLAQFGTCFRHEASgdTRGliRVRQFHQDDAHIFHAPGqsPDE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  141 DAELIMLTARWWRALGISEHVSLELNSIGSlearanyrdalvafleqhqetldedckrrmytnplrvldsknpdvqalln 220
Cdd:pfam00587  81 LEDYIKLIDRVYSRLGLEVRVVRLSNSDGS-------------------------------------------------- 110
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  221 dapalgdyldddsrehfaglcklldaagiaytvnqrlvrgLDYYNRTVFEWVTNSLGSQG-TVCAGGRYDGLVEQLGGRA 299
Cdd:pfam00587 111 ----------------------------------------AFYGPKLDFEVVFPSLGKQRqTGTIQNDGFRLPRRLGIRY 150
                         250       260       270
                  ....*....|....*....|....*....|.
gi 447029890  300 --------TP-AVGFA-MGLERLVLLVQAVN 320
Cdd:pfam00587 151 kdedneskFPyMIHRAgLGVERFLAAILENN 181
HisRS_anticodon cd00859
HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases ...
328-420 8.80e-31

HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.


Pssm-ID: 238436 [Multi-domain]  Cd Length: 91  Bit Score: 113.40  E-value: 8.80e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 328 VVDIYLVAAGAQTQSAAMTLAERLRDEmpGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQ 407
Cdd:cd00859    1 EVDVYVVPLGEGALSEALELAEQLRDA--GIKAEIDYGGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQ 78
                         90
                 ....*....|...
gi 447029890 408 TAVAQDSVAAHLR 420
Cdd:cd00859   79 ETVALDELVEELK 91
PLN02972 PLN02972
Histidyl-tRNA synthetase
9-423 1.48e-24

Histidyl-tRNA synthetase


Pssm-ID: 215525 [Multi-domain]  Cd Length: 763  Bit Score: 106.51  E-value: 1.48e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890   9 RGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTdvveKEMYTFEDRNGDSLTLRPEGTAGC 88
Cdd:PLN02972 331 KGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDS----KLIYDLADQGGELCSLRYDLTVPF 406
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  89 VRAGIEHGLlynQEQRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGP-DIDAELIMLtarwwralgISEHVSlELNs 167
Cdd:PLN02972 407 ARYVAMNGI---TSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPmGPDFEIIKV---------LTELLD-ELD- 472
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 168 IGSLEARANYRDALVAFLE-------------QHQETLD----EDCKRRMYTN---PLRVLD-------SKNPDVQALLN 220
Cdd:PLN02972 473 IGTYEVKLNHRKLLDGMLEicgvppekfrticSSIDKLDkqsfEQVKKEMVEEkglSNETADkignfvkERGPPLELLSK 552
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 221 ----DAPALGDYLDDDSREHFAGLCKLLDAAGI--AYTVNQRLVRGLDYYNRTVFEWVTNslGSQ-GTVCAGGRYDGLVE 293
Cdd:PLN02972 553 lrqeGSEFLGNASSRAALDELEIMFKALEKSKAigKIVFDLSLARGLDYYTGVIYEAVFK--GAQvGSIAAGGRYDNLVG 630
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 294 QLGGRATPAVGFAMGLERLVLLVQAVNPEfiASPVV-----DIYLVAAGAQTQSAAMTLAERL-----RDEMPGVKLMTN 363
Cdd:PLN02972 631 MFSGKQVPAVGVSLGIERVFAIMEQQEEE--KSQVIrptetEVLVSIIGDDKLALAAELVSELwnagiKAEYKVSTRKAK 708
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 364 HgggnfkkqFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423
Cdd:PLN02972 709 H--------LKRAKESGIPWMVLVGEKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAEL 760
hisZ PRK12295
ATP phosphoribosyltransferase regulatory subunit; Provisional
65-318 1.00e-15

ATP phosphoribosyltransferase regulatory subunit; Provisional


Pssm-ID: 183413 [Multi-domain]  Cd Length: 373  Bit Score: 78.05  E-value: 1.00e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  65 KEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLlyNQEQRLWYIGPMFRHerpQKGRYRQFHQLGAEVFGLQGP-DIDAE 143
Cdd:PRK12295  47 RRIFVTSDENGEELCLRPDFTIPVCRRHIATAG--GEPARYAYLGEVFRQ---RRDRASEFLQAGIESFGRADPaAADAE 121
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 144 LIMLTARWWRALGISEhVSLELNSIGSLEA--------------------RANYRDALVAFL--------EQHQETL--- 192
Cdd:PRK12295 122 VLALALEALAALGPGD-LEVRLGDVGLFAAlvdalglppgwkrrllrhfgRPRSLDALLARLagprvdplDEHAGVLaal 200
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 193 -DEDCKRRMYTNPL------------------RVL--------DSKNPDVQALLNDAPALGDYLDDDSR--EHFAGLCKL 243
Cdd:PRK12295 201 aDEAAARALVEDLMsiagispvggrspaeiarRLLekaalaaaARLPAEALAVLERFLAISGPPDAALAalRALAADAGL 280
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 244 ---------------LDAAGI---AYTVNQRLVRGLDYYNRTVFEWVTNSLGSqGTVCAGGRYDGLVEQLG-GRATPAVG 304
Cdd:PRK12295 281 dldaaldrfearlaaLAARGIdleRLRFSASFGRPLDYYTGFVFEIRAAGNGD-PPLAGGGRYDGLLTRLGaGEPIPAVG 359
                        330
                 ....*....|....
gi 447029890 305 FAMGLERLVLLVQA 318
Cdd:PRK12295 360 FSIWLDRLAALGGA 373
HGTP_anticodon pfam03129
Anticodon binding domain; This domain is found in histidyl, glycyl, threonyl and prolyl tRNA ...
328-422 6.15e-11

Anticodon binding domain; This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases it is probably the anticodon binding domain.


Pssm-ID: 460819 [Multi-domain]  Cd Length: 94  Bit Score: 58.75  E-value: 6.15e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  328 VVDIYLVAAGAQTQSAAMTLAERLRDEmpGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQ 407
Cdd:pfam03129   2 VVVIPLGEKAEELEEYAQKLAEELRAA--GIRVELDDRNESIGKKFRRADLIGIPFALVVGEKELEEGTVTVRRRDTGEQ 79
                          90
                  ....*....|....*
gi 447029890  408 TAVAQDSVAAHLRTL 422
Cdd:pfam03129  80 ETVSLDELVEKLKEL 94
PRK12421 PRK12421
ATP phosphoribosyltransferase regulatory subunit; Provisional
10-354 2.08e-10

ATP phosphoribosyltransferase regulatory subunit; Provisional


Pssm-ID: 237098  Cd Length: 392  Bit Score: 61.91  E-value: 2.08e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  10 GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVekemyTFedRNGDSLTLRPEGtagcV 89
Cdd:PRK12421  12 GVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQ-----TF--KLIDQLSGRLMG----V 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  90 RAGI--------EHGLLYNQEQRLWYIGPMFrHERPQK-GRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGIsEH 160
Cdd:PRK12421  81 RADItpqvaridAHLLNREGVARLCYAGSVL-HTLPQGlFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNAGV-PA 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 161 VSLELNSIG---SLEARA----NYRDALVAFLEQH-QETLDEDCKRRMYTNPLR----VLDSKNPDVQALLNDAPALGDY 228
Cdd:PRK12421 159 LHLDLGHVGifrRLAELAglspEEEEELFDLLQRKaLPELAEVCQNLGVGSDLRrmfyALARLNGGLEALDRALSVLALQ 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 229 lDDDSREHFAGLCKLLDAAGIAYT---VNQRLV--RGLDYYNRTVFEWVTNSLGSQgtVCAGGRYDGlVEQLGGRATPAV 303
Cdd:PRK12421 239 -DAAIRQALDELKTLAAHLKNRWPelpVSIDLAelRGYHYHTGLVFAAYIPGRGQA--LARGGRYDG-IGEAFGRARPAT 314
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 447029890 304 GFAMGLERLVLLVQAVnpefiaSPVVDIYLVAAGAQTQSAAMtlaERLRDE 354
Cdd:PRK12421 315 GFSMDLKELLALQFLE------EEAGAILAPWGDDPDLLAAI---AELRQQ 356
HGTP_anticodon cd00738
HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and ...
329-420 3.59e-07

HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).


Pssm-ID: 238379 [Multi-domain]  Cd Length: 94  Bit Score: 47.78  E-value: 3.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 329 VDIYLVAAGAQTQSA---AMTLAERLRDEmpGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSG 405
Cdd:cd00738    2 IDVAIVPLTDPRVEAreyAQKLLNALLAN--GIRVLYDDRERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTG 79
                         90
                 ....*....|....*
gi 447029890 406 EQTAVAQDSVAAHLR 420
Cdd:cd00738   80 ESETLHVDELPEFLV 94
hisZ PRK12293
ATP phosphoribosyltransferase regulatory subunit; Provisional
17-307 9.48e-06

ATP phosphoribosyltransferase regulatory subunit; Provisional


Pssm-ID: 183411  Cd Length: 281  Bit Score: 46.91  E-value: 9.48e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  17 GETA-IWQRIEGTLKNVLGSYGYSEIrlpiveQTPLFKRAIGE-VTDvvEKEMYTFEDRNGDSLTLRPEGTAGCVRAgIE 94
Cdd:PRK12293  16 GKSAkLKREIENVASEILYENGFEEI------VTPFFSYHQHQsIAD--EKELIRFSDEKNHQISLRADSTLDVVRI-VT 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  95 HGLLYNQEQRLW-YIGPMFRHerPQkgryRQFHQLGAEVFGlqGPDIdAELIMLTARWWRALGISEHVSLELNSIGSLEA 173
Cdd:PRK12293  87 KRLGRSTEHKKWfYIQPVFRY--PS----NEIYQIGAELIG--EEDL-SEILNIAAEIFEELELEPILQISNIKIPKLVA 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 174 RaNYRDALVAFLEQHQETLDEdcKRRMYTNPLRVLdsKNP-DVQALLNDAPalgdyldDDSREHfagLCKLLD-AAGIAY 251
Cdd:PRK12293 158 E-ILGLDIEVFKKGQIEKLLA--QNVPWLNKLVRI--KTLeDLDEVIELVP-------DEIKEE---LEKLKElAESIKY 222
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 447029890 252 TvNQRLV----RGLDYYNRTVFEWVTNSLgsqgTVCAGGRY--DGLveqlggratPAVGFAM 307
Cdd:PRK12293 223 E-NLVIAplyyAKMRYYDDLFFRFFDGNS----TLASGGNYeiDGI---------SSSGFAL 270
PRK09194 PRK09194
prolyl-tRNA synthetase; Provisional
330-424 2.37e-05

prolyl-tRNA synthetase; Provisional


Pssm-ID: 236405 [Multi-domain]  Cd Length: 565  Bit Score: 46.62  E-value: 2.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 330 DIYLVAAGAQTQsAAMTLAERL---------------RDEMPGVKlmtnhgggnfkkqFARADKWGARIALVLGESEVAD 394
Cdd:PRK09194 470 DVHIVPVNMKDE-EVKELAEKLyaelqaagievllddRKERPGVK-------------FADADLIGIPHRIVVGDRGLAE 535
                         90       100       110
                 ....*....|....*....|....*....|
gi 447029890 395 GTVVVKDLRSGEQTAVAQDSVAAHLRTLLG 424
Cdd:PRK09194 536 GIVEYKDRRTGEKEEVPVDELVEFLKALKK 565
ProRS_anticodon_short cd00861
ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS ...
328-415 7.76e-04

ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.


Pssm-ID: 238438 [Multi-domain]  Cd Length: 94  Bit Score: 38.34  E-value: 7.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890 328 VVDIYLVAAGAQTQSAAMTLAERL-----------RDEMPGVKlmtnhgggnfkkqFARADKWGARIALVLGESEVADGT 396
Cdd:cd00861    4 VVIIPMNMKDEVQQELAEKLYAELqaagvdvllddRNERPGVK-------------FADADLIGIPYRIVVGKKSAAEGI 70
                         90
                 ....*....|....*....
gi 447029890 397 VVVKDLRSGEQTAVAQDSV 415
Cdd:cd00861   71 VEIKVRKTGEKEEISIDEL 89
ThrRS_core cd00771
Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is ...
10-133 3.07e-03

Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.


Pssm-ID: 238394 [Multi-domain]  Cd Length: 298  Bit Score: 39.46  E-value: 3.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447029890  10 GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKraIGEVTDVVEKEMYTFEdRNGDSLTLRPegtAGCV 89
Cdd:cd00771   21 GLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWE--TSGHWDHYRENMFPFE-EEDEEYGLKP---MNCP 94
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 447029890  90 ragiEHGLLYNQEQRLWY--------IGPMFRHErpQKG------RYRQFHQLGAEVF 133
Cdd:cd00771   95 ----GHCLIFKSKPRSYRdlplrlaeFGTVHRYE--QSGalhgltRVRGFTQDDAHIF 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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