NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|447048289|ref|WP_001125545|]
View 

50S ribosomal protein L35 [Helicobacter pylori]

Protein Classification

large ribosomal subunit protein bL35( domain architecture ID 10000967)

large ribosomal subunit protein bL35, also called 50S ribosomal protein L35 in bacteria, is involved in signal peptide recognition

Gene Ontology:  GO:0006412|GO:0003735|GO:0015934
PubMed:  24524803|12900959|11297922|11290319
SCOP:  4003406

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-63 6.15e-16

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440060  Cd Length: 64  Bit Score: 64.30  E-value: 6.15e-16
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 447048289  1 MPKMKTNRGASKRFKVKKN-LIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNVHSVMSLLCR 63
Cdd:COG0291   1 MPKMKTHSGAKKRFKVTGSgKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLLPY 64
 
Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-63 6.15e-16

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440060  Cd Length: 64  Bit Score: 64.30  E-value: 6.15e-16
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 447048289  1 MPKMKTNRGASKRFKVKKN-LIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNVHSVMSLLCR 63
Cdd:COG0291   1 MPKMKTHSGAKKRFKVTGSgKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLLPY 64
rpmI_bact TIGR00001
ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is ...
 2-63 5.64e-13

ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272847  Cd Length: 63  Bit Score: 56.90  E-value: 5.64e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 447048289   2 PKMKTNRGASKRFKV-KKNLIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNVHSVMSLLCR 63
Cdd:TIGR00001  1 PKMKTHKAAAKRFKItGSGKIKRKKAGKRHLLTKKSSKRKRQLRKKAVVSKGDLKRVKLLLPY 63
Ribosomal_L35p pfam01632
Ribosomal protein L35;
2-61 8.37e-12

Ribosomal protein L35;


Pssm-ID: 460273  Cd Length: 61  Bit Score: 53.53  E-value: 8.37e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 447048289   2 PKMKTNRGASKRFKVKKN-LIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNVHSVMSLL 61
Cdd:pfam01632  1 PKMKTHKGAAKRFKVTGSgKIKRRKAGKRHILTKKSTKRKRRLRKTVLVSKADAKRVKKLL 61
rpl35 CHL00103
ribosomal protein L35
 1-43 1.95e-05

ribosomal protein L35


Pssm-ID: 214367  Cd Length: 65  Bit Score: 37.76  E-value: 1.95e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 447048289  1 MPKMKTNRGASKRFKVKKN-LIKRGSAFKSHILTKKSPKRKANL 43
Cdd:CHL00103  1 MPKLKTRKAAAKRYKKTGNgKFLRRKAFKSHLLQKKSSKQKRKL 44
 
Name Accession Description Interval E-value
RpmI COG0291
Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 ...
 1-63 6.15e-16

Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L35 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440060  Cd Length: 64  Bit Score: 64.30  E-value: 6.15e-16
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 447048289  1 MPKMKTNRGASKRFKVKKN-LIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNVHSVMSLLCR 63
Cdd:COG0291   1 MPKMKTHSGAKKRFKVTGSgKIKRKKAGKRHLLTKKSTKRKRRLRGTTVVSKADAKRVKRLLPY 64
rpmI_bact TIGR00001
ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is ...
 2-63 5.64e-13

ribosomal protein L35; This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272847  Cd Length: 63  Bit Score: 56.90  E-value: 5.64e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 447048289   2 PKMKTNRGASKRFKV-KKNLIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNVHSVMSLLCR 63
Cdd:TIGR00001  1 PKMKTHKAAAKRFKItGSGKIKRKKAGKRHLLTKKSSKRKRQLRKKAVVSKGDLKRVKLLLPY 63
Ribosomal_L35p pfam01632
Ribosomal protein L35;
2-61 8.37e-12

Ribosomal protein L35;


Pssm-ID: 460273  Cd Length: 61  Bit Score: 53.53  E-value: 8.37e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 447048289   2 PKMKTNRGASKRFKVKKN-LIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNVHSVMSLL 61
Cdd:pfam01632  1 PKMKTHKGAAKRFKVTGSgKIKRRKAGKRHILTKKSTKRKRRLRKTVLVSKADAKRVKKLL 61
rpl35 CHL00103
ribosomal protein L35
 1-43 1.95e-05

ribosomal protein L35


Pssm-ID: 214367  Cd Length: 65  Bit Score: 37.76  E-value: 1.95e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 447048289  1 MPKMKTNRGASKRFKVKKN-LIKRGSAFKSHILTKKSPKRKANL 43
Cdd:CHL00103  1 MPKLKTRKAAAKRYKKTGNgKFLRRKAFKSHLLQKKSSKQKRKL 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH