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Conserved domains on  [gi|447124304|ref|WP_001201560|]
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MULTISPECIES: DUF1418 family protein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1418 super family cl11648
Protein of unknown function (DUF1418); This family consists of several hypothetical ...
 1-93 5.48e-33

Protein of unknown function (DUF1418); This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In E. coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam07214:

Pssm-ID: 386195  Cd Length: 94  Bit Score: 109.85  E-value: 5.48e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447124304   1 MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEVQILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNRPP 80
Cdd:pfam07214  1 MRSIGNLPRSVLILEVLGMILLVLAYLSVNDYLSLPGPMSSPLAAIVMIFLGVGLMLPAAVAIVWRVAQGFAPQLMKRPP 80

                         90
                 ....*....|....
gi 447124304  81 QY-SRSEREKDNDA 93
Cdd:pfam07214 81 DKsSRSKREKKNKK 94
 
Name Accession Description Interval E-value
DUF1418 pfam07214
Protein of unknown function (DUF1418); This family consists of several hypothetical ...
 1-93 5.48e-33

Protein of unknown function (DUF1418); This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In E. coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter. The function of this family is unknown.


Pssm-ID: 369264  Cd Length: 94  Bit Score: 109.85  E-value: 5.48e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447124304   1 MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEVQILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNRPP 80
Cdd:pfam07214  1 MRSIGNLPRSVLILEVLGMILLVLAYLSVNDYLSLPGPMSSPLAAIVMIFLGVGLMLPAAVAIVWRVAQGFAPQLMKRPP 80

                         90
                 ....*....|....
gi 447124304  81 QY-SRSEREKDNDA 93
Cdd:pfam07214 81 DKsSRSKREKKNKK 94
PRK10591 PRK10591
hypothetical protein; Provisional
 1-92 2.68e-31

hypothetical protein; Provisional


Pssm-ID: 182573  Cd Length: 92  Bit Score: 105.51  E-value: 2.68e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447124304  1 MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEVQILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNRPP 80
Cdd:PRK10591  1 MRALGDLPKSVLILEVLGMLLLVVAYLSLNDYLSLPEPLSTPTAAILMIFLGVLLMLPAAVVIIWRVAKGLAPQLMNRPP 80

                        90
                ....*....|..
gi 447124304 81 QYSRSEREKDND 92
Cdd:PRK10591 81 QYSRSEREKDND 92
 
Name Accession Description Interval E-value
DUF1418 pfam07214
Protein of unknown function (DUF1418); This family consists of several hypothetical ...
 1-93 5.48e-33

Protein of unknown function (DUF1418); This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In E. coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter. The function of this family is unknown.


Pssm-ID: 369264  Cd Length: 94  Bit Score: 109.85  E-value: 5.48e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447124304   1 MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEVQILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNRPP 80
Cdd:pfam07214  1 MRSIGNLPRSVLILEVLGMILLVLAYLSVNDYLSLPGPMSSPLAAIVMIFLGVGLMLPAAVAIVWRVAQGFAPQLMKRPP 80

                         90
                 ....*....|....
gi 447124304  81 QY-SRSEREKDNDA 93
Cdd:pfam07214 81 DKsSRSKREKKNKK 94
PRK10591 PRK10591
hypothetical protein; Provisional
 1-92 2.68e-31

hypothetical protein; Provisional


Pssm-ID: 182573  Cd Length: 92  Bit Score: 105.51  E-value: 2.68e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447124304  1 MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEVQILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNRPP 80
Cdd:PRK10591  1 MRALGDLPKSVLILEVLGMLLLVVAYLSLNDYLSLPEPLSTPTAAILMIFLGVLLMLPAAVVIIWRVAKGLAPQLMNRPP 80

                        90
                ....*....|..
gi 447124304 81 QYSRSEREKDND 92
Cdd:PRK10591 81 QYSRSEREKDND 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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