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Conserved domains on  [gi|447127284|ref|WP_001204540|]
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MULTISPECIES: head-tail joining protein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_attach super family cl05094
Phage Head-Tail Attachment; The phage head-tail attachment protein is required for the joining ...
 1-117 8.69e-53

Phage Head-Tail Attachment; The phage head-tail attachment protein is required for the joining of phage heads and tails at the last step of morphogenesis.


The actual alignment was detected with superfamily member pfam05354:

Pssm-ID: 446606  Cd Length: 117  Bit Score: 161.62  E-value: 8.69e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447127284    1 MRDFQNAFDAALAGVDSTIVEVMGISAQFTSGAQRGGEVHGVFDDPESLGFASSGIRIEGSNPSLFVLTDTVCAVRRGDT 80
Cdd:pfam05354   1 MADFDNLFDTAISRADDAIRGVMGTVATITSGVLSGATLTGVFDDPENISYAGGGVRVEGDSPTLFVKTSLVVQLKRPDT 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 447127284   81 LTINGEMFWVDRVSPDDGGSCYLWLNRGQPPAASRRR 117
Cdd:pfam05354  81 LTILGDTFWVDRVTPDDGGSCHIWLGRGTPPADNRRR 117
 
Name Accession Description Interval E-value
Phage_attach pfam05354
Phage Head-Tail Attachment; The phage head-tail attachment protein is required for the joining ...
 1-117 8.69e-53

Phage Head-Tail Attachment; The phage head-tail attachment protein is required for the joining of phage heads and tails at the last step of morphogenesis.


Pssm-ID: 283102  Cd Length: 117  Bit Score: 161.62  E-value: 8.69e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447127284    1 MRDFQNAFDAALAGVDSTIVEVMGISAQFTSGAQRGGEVHGVFDDPESLGFASSGIRIEGSNPSLFVLTDTVCAVRRGDT 80
Cdd:pfam05354   1 MADFDNLFDTAISRADDAIRGVMGTVATITSGVLSGATLTGVFDDPENISYAGGGVRVEGDSPTLFVKTSLVVQLKRPDT 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 447127284   81 LTINGEMFWVDRVSPDDGGSCYLWLNRGQPPAASRRR 117
Cdd:pfam05354  81 LTILGDTFWVDRVTPDDGGSCHIWLGRGTPPADNRRR 117
 
Name Accession Description Interval E-value
Phage_attach pfam05354
Phage Head-Tail Attachment; The phage head-tail attachment protein is required for the joining ...
 1-117 8.69e-53

Phage Head-Tail Attachment; The phage head-tail attachment protein is required for the joining of phage heads and tails at the last step of morphogenesis.


Pssm-ID: 283102  Cd Length: 117  Bit Score: 161.62  E-value: 8.69e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447127284    1 MRDFQNAFDAALAGVDSTIVEVMGISAQFTSGAQRGGEVHGVFDDPESLGFASSGIRIEGSNPSLFVLTDTVCAVRRGDT 80
Cdd:pfam05354   1 MADFDNLFDTAISRADDAIRGVMGTVATITSGVLSGATLTGVFDDPENISYAGGGVRVEGDSPTLFVKTSLVVQLKRPDT 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 447127284   81 LTINGEMFWVDRVSPDDGGSCYLWLNRGQPPAASRRR 117
Cdd:pfam05354  81 LTILGDTFWVDRVTPDDGGSCHIWLGRGTPPADNRRR 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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