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Conserved domains on  [gi|447144373|ref|WP_001221629|]
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MULTISPECIES: zinc-ribbon domain-containing protein [Enterobacteriaceae]

Protein Classification

zinc-ribbon domain-containing protein( domain architecture ID 10569452)

zinc-ribbon domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zinc_ribbon_11 pfam11682
Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted ...
 2-126 4.16e-79

Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. It is a probably zinc-ribbon.


:

Pssm-ID: 288524  Cd Length: 127  Bit Score: 229.53  E-value: 4.16e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447144373    2 RILNCYMANDSKGHFVTAKEAAKHNRRDVLCCVSCGCPLTLQRGNDGQQPWFEHDQMTVAEKILLRCTWLDPAEKEARRL 81
Cdd:pfam11682   1 RFLKCYLANDAKGHFVNAKEAAKHNQGDVLCCTSCGCPLTLHNGNDCQEAWFEHDQFSIAEKILKACAWLDPAEKEAERI 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 447144373   82 -HLQGMTVLDYTV-KVRKWFCVMCDEDYEGEKCCPRCGTGVYSRAWG 126
Cdd:pfam11682  81 kHLQEKIRADYALpEPNKWFCVLCDEDYEGEKCCPACGDGIYSRAVE 127
 
Name Accession Description Interval E-value
zinc_ribbon_11 pfam11682
Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted ...
 2-126 4.16e-79

Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. It is a probably zinc-ribbon.


Pssm-ID: 288524  Cd Length: 127  Bit Score: 229.53  E-value: 4.16e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447144373    2 RILNCYMANDSKGHFVTAKEAAKHNRRDVLCCVSCGCPLTLQRGNDGQQPWFEHDQMTVAEKILLRCTWLDPAEKEARRL 81
Cdd:pfam11682   1 RFLKCYLANDAKGHFVNAKEAAKHNQGDVLCCTSCGCPLTLHNGNDCQEAWFEHDQFSIAEKILKACAWLDPAEKEAERI 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 447144373   82 -HLQGMTVLDYTV-KVRKWFCVMCDEDYEGEKCCPRCGTGVYSRAWG 126
Cdd:pfam11682  81 kHLQEKIRADYALpEPNKWFCVLCDEDYEGEKCCPACGDGIYSRAVE 127
 
Name Accession Description Interval E-value
zinc_ribbon_11 pfam11682
Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted ...
 2-126 4.16e-79

Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. It is a probably zinc-ribbon.


Pssm-ID: 288524  Cd Length: 127  Bit Score: 229.53  E-value: 4.16e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447144373    2 RILNCYMANDSKGHFVTAKEAAKHNRRDVLCCVSCGCPLTLQRGNDGQQPWFEHDQMTVAEKILLRCTWLDPAEKEARRL 81
Cdd:pfam11682   1 RFLKCYLANDAKGHFVNAKEAAKHNQGDVLCCTSCGCPLTLHNGNDCQEAWFEHDQFSIAEKILKACAWLDPAEKEAERI 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 447144373   82 -HLQGMTVLDYTV-KVRKWFCVMCDEDYEGEKCCPRCGTGVYSRAWG 126
Cdd:pfam11682  81 kHLQEKIRADYALpEPNKWFCVLCDEDYEGEKCCPACGDGIYSRAVE 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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