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Conserved domains on  [gi|447147259|ref|WP_001224515|]
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MULTISPECIES: phage DNA packaging protein C [Bacteria][Archaea]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_C pfam12025
Phage protein C; This family of phage proteins is functionally uncharacterized. Proteins in ...
 5-72 1.46e-41

Phage protein C; This family of phage proteins is functionally uncharacterized. Proteins in this family are typically between 68 to 86 amino acids in length.


:

Pssm-ID: 288848  Cd Length: 68  Bit Score: 130.20  E-value: 1.46e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 447147259   5 DLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFRYESHFVHGRDSLVDILKERGLL 72
Cdd:pfam12025  1 DLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFRYESHFVHGRDSLVDILKERGLL 68
 
Name Accession Description Interval E-value
Phage_C pfam12025
Phage protein C; This family of phage proteins is functionally uncharacterized. Proteins in ...
 5-72 1.46e-41

Phage protein C; This family of phage proteins is functionally uncharacterized. Proteins in this family are typically between 68 to 86 amino acids in length.


Pssm-ID: 288848  Cd Length: 68  Bit Score: 130.20  E-value: 1.46e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 447147259   5 DLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFRYESHFVHGRDSLVDILKERGLL 72
Cdd:pfam12025  1 DLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFRYESHFVHGRDSLVDILKERGLL 68
 
Name Accession Description Interval E-value
Phage_C pfam12025
Phage protein C; This family of phage proteins is functionally uncharacterized. Proteins in ...
 5-72 1.46e-41

Phage protein C; This family of phage proteins is functionally uncharacterized. Proteins in this family are typically between 68 to 86 amino acids in length.


Pssm-ID: 288848  Cd Length: 68  Bit Score: 130.20  E-value: 1.46e-41
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 447147259   5 DLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFRYESHFVHGRDSLVDILKERGLL 72
Cdd:pfam12025  1 DLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFVKDWFRYESHFVHGRDSLVDILKERGLL 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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