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Conserved domains on  [gi|447151439|ref|WP_001228695|]
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MULTISPECIES: prophage lysis lipoprotein RzoD [Enterobacteriaceae]

Protein Classification

Rz1 family lipoprotein( domain architecture ID 10532848)

Rz1 family lipoprotein similar to bacteria and phage lipoprotein Rz1, which is a proline-rich lipoprotein from bacteriophage lambda that is known to have fusogenic properties

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Rz1 pfam06085
Lipoprotein Rz1 precursor; This family consists of several bacteria and phage lipoprotein Rz1 ...
20-60 1.27e-09

Lipoprotein Rz1 precursor; This family consists of several bacteria and phage lipoprotein Rz1 precursors. Rz1 is a proline-rich lipoprotein from bacteriophage lambda which is known to have fusogenic properties. Rz1-induced liposome fusion is thought to be mediated primarily by the generation of local perturbation in the bilayer lipid membrane and to a lesser extent by electrostatic forces. This family Rz1 and the Rz protein Rz (pfam03245) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.


:

Pssm-ID: 368737  Cd Length: 41  Bit Score: 47.60  E-value: 1.27e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 447151439  20 CTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSERG 60
Cdd:pfam06085  1 CSSTPPVQCQVKPPAPPAWAMQPPPDWQQLLNEIISVSETE 41
 
Name Accession Description Interval E-value
Rz1 pfam06085
Lipoprotein Rz1 precursor; This family consists of several bacteria and phage lipoprotein Rz1 ...
20-60 1.27e-09

Lipoprotein Rz1 precursor; This family consists of several bacteria and phage lipoprotein Rz1 precursors. Rz1 is a proline-rich lipoprotein from bacteriophage lambda which is known to have fusogenic properties. Rz1-induced liposome fusion is thought to be mediated primarily by the generation of local perturbation in the bilayer lipid membrane and to a lesser extent by electrostatic forces. This family Rz1 and the Rz protein Rz (pfam03245) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.


Pssm-ID: 368737  Cd Length: 41  Bit Score: 47.60  E-value: 1.27e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 447151439  20 CTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSERG 60
Cdd:pfam06085  1 CSSTPPVQCQVKPPAPPAWAMQPPPDWQQLLNEIISVSETE 41
 
Name Accession Description Interval E-value
Rz1 pfam06085
Lipoprotein Rz1 precursor; This family consists of several bacteria and phage lipoprotein Rz1 ...
20-60 1.27e-09

Lipoprotein Rz1 precursor; This family consists of several bacteria and phage lipoprotein Rz1 precursors. Rz1 is a proline-rich lipoprotein from bacteriophage lambda which is known to have fusogenic properties. Rz1-induced liposome fusion is thought to be mediated primarily by the generation of local perturbation in the bilayer lipid membrane and to a lesser extent by electrostatic forces. This family Rz1 and the Rz protein Rz (pfam03245) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.


Pssm-ID: 368737  Cd Length: 41  Bit Score: 47.60  E-value: 1.27e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 447151439  20 CTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSERG 60
Cdd:pfam06085  1 CSSTPPVQCQVKPPAPPAWAMQPPPDWQQLLNEIISVSETE 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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