|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
104-667 |
0e+00 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 602.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 104 FIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHH 183
Cdd:PRK15429 134 FIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHY 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 184 FFGLASVSMVLGDHRKNeKFSLWCSD-LSASHCACLPRCMPGESVLLTQTLQTRQPTLT--HRADDLFLWQRdpLLLLLA 260
Cdd:PRK15429 214 YFDIDAISIVLRSHRKN-KLNIYSTHyLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLInlHERDDLAPYER--MLFDTW 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 261 SNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLS 340
Cdd:PRK15429 291 GNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNN 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 341 -NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGH 419
Cdd:PRK15429 371 vDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGH 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 420 DKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ 499
Cdd:PRK15429 451 ERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 500 FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTR 579
Cdd:PRK15429 531 FRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 580 GNSLNLHlnvrqsrlLPTLNEDSALRSSMAqllhPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRM 659
Cdd:PRK15429 611 GNVLQLS--------LPDITLPEPETPPAA----TVVAQEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRM 678
|
....*...
gi 447174288 660 QRLGISVR 667
Cdd:PRK15429 679 KRLGIDKS 686
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
310-665 |
2.92e-177 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 512.01 E-value: 2.92e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 310 AVGNADAWRSMTDLQESLQQEnhQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH 389
Cdd:COG3829 105 AVETFRDITELKRLERKLREE--ELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIH 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 390 QLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR-GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREI 468
Cdd:COG3829 183 NASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKpGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEV 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 469 ERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548
Cdd:COG3829 263 RRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGIS 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 549 TEALRQLMSWDWPGNVRELENVIERAVLLTRGNSL---NLHLNVRQSRLLPTLNEDSALRSSMAQLlhpttpendeeERQ 625
Cdd:COG3829 343 PEALELLLAYDWPGNVRELENVIERAVVLSEGDVItpeHLPEYLLEEAEAASAAEEGSLKEALEEV-----------EKE 411
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 447174288 626 RIVQVLRETNGIVagpRGAATRLGMKRTTLLSRMQRLGIS 665
Cdd:COG3829 412 LIEEALEKTGGNK---SKAAKALGISRSTLYRKLKKYGIK 448
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
319-663 |
7.78e-143 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 422.84 E-value: 7.78e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 319 SMTDLQESLQQ--ENHQLSEQllsNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRD 396
Cdd:COG2204 106 DLEELLAAVERalERRRLRRE---NAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRAD 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 397 KPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRT 476
Cdd:COG2204 183 GPFVAVNCAAIPEELLESELFGHEKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKP 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 477 IPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIdAIPTEALRQLM 556
Cdd:COG2204 263 IPVDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPV-KLSPEALEALL 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 557 SWDWPGNVRELENVIERAVLLTRGNSLNLHLnvrqsrllptlnedsaLRSSMAQLlhpttpendeeERQRIVQVLRETNG 636
Cdd:COG2204 342 AYDWPGNVRELENVIERAVILADGEVITAED----------------LPEALEEV-----------ERELIERALEETGG 394
|
330 340
....*....|....*....|....*..
gi 447174288 637 IVAgprGAATRLGMKRTTLLSRMQRLG 663
Cdd:COG2204 395 NVS---RAAELLGISRRTLYRKLKKYG 418
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
325-666 |
3.66e-128 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 388.38 E-value: 3.66e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 325 ESLQQENHQLSEQLLSN-LGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKIN 403
Cdd:PRK05022 166 ESQAELPQDVAEFLRQEaLKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLN 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 404 CAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRV 483
Cdd:PRK05022 246 CAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRV 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 484 IAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563
Cdd:PRK05022 326 IAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGN 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 564 VRELENVIERAVLLTRGNSLNL-------HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTpenDEEERQRIVQVLRETNG 636
Cdd:PRK05022 406 VRELEHVISRAALLARARGAGRivtleaqHLDLPAEVALPPPEAAAAPAAVVSQNLREAT---EAFQRQLIRQALAQHQG 482
|
330 340 350
....*....|....*....|....*....|
gi 447174288 637 IVAgprGAATRLGMKRTTLLSRMQRLGISV 666
Cdd:PRK05022 483 NWA---AAARALELDRANLHRLAKRLGLKD 509
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
220-667 |
2.32e-123 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 376.75 E-value: 2.32e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 220 RCMPGESVLlTQTLQTRQPTLTHR--ADDLFLWQrdpllLLLASNGCESALLIPLtFGNHTPGALLLAHT--SSTLFSEE 295
Cdd:TIGR01817 68 RYRVGEGAI-GQIVATGNSLVVPDvaAEPLFLDR-----LSLYDPGPVPFIGVPI-KADSETIGVLAADRdfRSRERLEE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 296 NCQLLQHIADRIAIAVgnaDAWRSMTDLQESLQQENHQLSEQLLS---------NLGIGDIIYQSQAMEDLLQQVDIVAK 366
Cdd:TIGR01817 141 EVRFLEMVANLIGQTV---RLHRLVAQRRERLIAEAVQLSKQLRDkapeiarrrSGKEDGIIGKSPAMRQVVDQARVVAR 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 367 SDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLD 446
Cdd:TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLD 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIP 526
Cdd:TIGR01817 298 EIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIP 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 527 LLAKHFTQKMARHMNRAIdAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLH---LNVRQ---SRLLPTLNE 600
Cdd:TIGR01817 378 LLAEAFLEKFNRENGRPL-TITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTITRSdfsCQSGQclsPMLAKTCPH 456
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 447174288 601 DSALRSSMAQLLHPTTPENDE------------EERQRIVQVLRETNGIVAgprGAATRLGMKRTTLLSRMQRLGISVR 667
Cdd:TIGR01817 457 GHISIDPLAGTTPPHSPASAAlpgepglsgptlSERERLIAALEQAGWVQA---KAARLLGMTPRQVGYALRKLNIEMK 532
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
225-663 |
1.71e-121 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 375.01 E-value: 1.71e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 225 ESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLL------LASNGCESALLipltfgnHTPGALLLAHTSSTLFSEENCQ 298
Cdd:COG3284 199 ENRLFLRSFRREWRLRLHFLPEFLGSLSEGLLAFdedgriVAANRAARRLL-------GLADAALLGRPLEELFGLDLEA 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 299 LLQHIADR----IAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSnLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLIC 374
Cdd:COG3284 272 LPDGARRApaspRPLRLRDGRRLGALLRLRPARRAARAAPAGAPAP-AALAALAGGDPAMRRALRRARRLADRDIPVLIL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 375 GETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAI-NTHRGRFEIADGGTLFLDEIGDLPL 453
Cdd:COG3284 351 GETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGARrKGRPGKIEQADGGTLFLDEIGDMPL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 454 ELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRpEDIPLLAKHFT 533
Cdd:COG3284 431 ALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRER-EDLPALIEHLL 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 534 QKMARHMNRAidAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHlnvrqsrLLPTLNEDSALRSSMAQLLH 613
Cdd:COG3284 510 RELAAGRGPL--RLSPEALALLAAYPWPGNVRELRNVLRTALALADGGVITVE-------DLPDELRAELAAAAPAAAAP 580
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 447174288 614 PTTPEndEEERQRIVQVLRETNGIVAgprGAATRLGMKRTTLLSRMQRLG 663
Cdd:COG3284 581 LTSLE--EAERDAILRALRACGGNVS---AAARALGISRSTLYRKLKRYG 625
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
325-664 |
1.09e-116 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 356.85 E-value: 1.09e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 325 ESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINC 404
Cdd:PRK11361 123 QSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNC 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 405 AAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVI 484
Cdd:PRK11361 203 AALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRII 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 485 AATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNV 564
Cdd:PRK11361 283 AATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNI 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 565 RELENVIERAVLLTRGNSL---NLHLNVRQSRLLPTLNEDSALRSsmaqllHPTTPENDEEERQRIVQVLrETNGivaGP 641
Cdd:PRK11361 363 RELSNVIERAVVMNSGPIIfseDLPPQIRQPVCNAGEVKTAPVGE------RNLKEEIKRVEKRIIMEVL-EQQE---GN 432
|
330 340
....*....|....*....|....
gi 447174288 642 RG-AATRLGMKRTTLLSRMQRLGI 664
Cdd:PRK11361 433 RTrTALMLGISRRALMYKLQEYGI 456
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
347-514 |
8.68e-115 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 340.92 E-value: 8.68e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTG 426
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 427 AINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 447174288 507 RLNVFPLE 514
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
327-665 |
2.29e-110 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 340.19 E-value: 2.29e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 327 LQQENHQLSEQLlSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAA 406
Cdd:TIGR02915 122 LETENRRLQSAL-GGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAA 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 407 IPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAA 486
Cdd:TIGR02915 201 IPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCA 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 487 TNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE 566
Cdd:TIGR02915 281 TNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 567 LENVIERAVLLTRGNSLN---------------LHLNVRQSRllptlnedsalrssmaqllhpttpenDEEERQRIVQVL 631
Cdd:TIGR02915 361 LENKVKRAVIMAEGNQITaedlgldareraetpLEVNLREVR--------------------------ERAEREAVRKAI 414
|
330 340 350
....*....|....*....|....*....|....
gi 447174288 632 RETNGIVAgprGAATRLGMKRTTLLSRMQRLGIS 665
Cdd:TIGR02915 415 ARVDGNIA---RAAELLGITRPTLYDLMKKHGIK 445
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
323-661 |
2.26e-105 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 327.37 E-value: 2.26e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 323 LQESL-------QQENHQLSEQLLSNLGIgdiIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRR 395
Cdd:PRK10365 113 LQATLekalahtHSIDAETPAVTASQFGM---VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARS 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 396 DKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSR 475
Cdd:PRK10365 190 EKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQ 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 476 TIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQL 555
Cdd:PRK10365 270 TISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLL 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 556 MSWDWPGNVRELENVIERAVLLTRGNSLNlhlnvrqSRLLPTLNEDSALRSSMAQLLHPTTpendEEERQRIVQVLRETN 635
Cdd:PRK10365 350 IHYDWPGNIRELENAVERAVVLLTGEYIS-------ERELPLAIASTPIPLGQSQDIQPLV----EVEKEVILAALEKTG 418
|
330 340
....*....|....*....|....*.
gi 447174288 636 GivaGPRGAATRLGMKRTTLLSRMQR 661
Cdd:PRK10365 419 G---NKTEAARQLGITRKTLLAKLSR 441
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
268-665 |
2.32e-101 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 312.94 E-value: 2.32e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 268 LLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAvgnadawrsmtdlqeslqqenhqlseqllsnlgigdi 347
Cdd:COG3604 77 LGVPLRVGGEVLGVLTLDSRRPGAFSEEDLRLLETLASLAAVA------------------------------------- 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 348 iyqsqamedllqqvdivaksdstvlICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESelfghdkgaftga 427
Cdd:COG3604 120 -------------------------ILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES------------- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 428 inthrgrfeiadggtlfldeigdlplelqpkllrvLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR 507
Cdd:COG3604 162 -----------------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYR 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 508 LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHL 587
Cdd:COG3604 207 LNVFPIRLPPLRERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADD 286
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 447174288 588 nvrqsrllptlnedsalrssmaqLLHPTTPENDEEERQRIVQVLRETNGIVAgprGAATRLGMKRTTLLSRMQRLGIS 665
Cdd:COG3604 287 -----------------------LAPGSREALEEVEREHILEALERTGGNIA---GAARLLGLTPSTLRSRMKKLGIK 338
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
347-575 |
2.21e-100 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 310.38 E-value: 2.21e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 347 IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTG 426
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 427 AINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFY 506
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 447174288 507 RLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRaiDAIP---TEALRQLMSWDWPGNVRELENVIERAV 575
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGL--PLFPgftPQAREQLLEYHWPGNVRELKNVVERSV 230
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
321-655 |
8.03e-100 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 315.66 E-value: 8.03e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 321 TDLQESLQQENHQLSEQLLSNlgigdIIYQSQAMEDLLQQVDIVA-KSDSTVLICGETGTGKEVIARAIHQLSPRRDK-- 397
Cdd:NF038308 160 DALAQRFAREQAEAVSFLKSG-----IATRNAAFNRLIEQIERVAlRSRAPILLTGPTGAGKSFLARRIYELKKRRHQvs 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 398 -PLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRT 476
Cdd:NF038308 235 gPFVEVNCATLRGDLAMSELFGHVKGAFTGAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 477 IPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAI----DAIPT-EA 551
Cdd:NF038308 315 VSSDFQLIAGTNRDLRQEVAEGRFREDLYARINLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVrfnkEARFRyLA 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 552 LRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLnV--------RQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEE 623
Cdd:NF038308 395 FATSPEALWPGNFRELSASVTRMATLADGGRITEEL-VeeeiarlrAAWQSAPAAADDDALADLLGGEQLAELDLFDRVQ 473
|
330 340 350
....*....|....*....|....*....|..
gi 447174288 624 RQRIVQVLRETNGIVAgprGAATRLGMKRTTL 655
Cdd:NF038308 474 LAAVLRVCRQSRSLSA---AGRRLFGVSRQQK 502
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
346-662 |
1.20e-99 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 313.21 E-value: 1.20e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425
Cdd:TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFT 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 426 GAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505
Cdd:TIGR01818 215 GANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLF 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNL 585
Cdd:TIGR01818 295 HRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGDEVLV 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 586 ----------HLNVRQSRLLPTLNEDSALRSSMAQ--------LLHPTTPendEEERQRIVQVLRETNGivaGPRGAATR 647
Cdd:TIGR01818 375 sdlpaelaltGRPASAPDSDGQDSWDEALEAWAKQalsrgeqgLLDRALP---EFERPLLEAALQHTRG---HKQEAAAL 448
|
330
....*....|....*
gi 447174288 648 LGMKRTTLLSRMQRL 662
Cdd:TIGR01818 449 LGWGRNTLTRKLKEL 463
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
344-661 |
7.90e-98 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 310.88 E-value: 7.90e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 344 IGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIH--------QLSPRRDKPLVKINCAAIPASLLESE 415
Cdd:PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNCGAIAESLLEAE 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 416 LFGHDKGAFTGAINTHR-GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQM 494
Cdd:PRK15424 298 LFGYEEGAFTGSRRGGRaGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEED 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 495 VEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFtqkmARHMNRAIDAIPTEALRQ--------LMSWDWPGNVRE 566
Cdd:PRK15424 378 VRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESF----LKQSLAALSAPFSAALRQglqqcetlLLHYDWPGNVRE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 567 LENVIERavlltrgnsLNLHLNVRQsrlLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGivaGPRGAAT 646
Cdd:PRK15424 454 LRNLMER---------LALFLSVEP---TPDLTPQFLQLLLPELARESAKTPAPRLLAATLQQALERFNG---DKTAAAN 518
|
330
....*....|....*
gi 447174288 647 RLGMKRTTLLSRMQR 661
Cdd:PRK15424 519 YLGISRTTLWRRLKA 533
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
346-600 |
7.85e-96 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 302.53 E-value: 7.85e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFT 425
Cdd:PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFT 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 426 GAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLF 505
Cdd:PRK15115 215 GAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLY 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 506 YRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTR----GN 581
Cdd:PRK15115 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSspviSD 374
|
250
....*....|....*....
gi 447174288 582 SLNLHLNVRQSRLLPTLNE 600
Cdd:PRK15115 375 ALVEQALEGENTALPTFVE 393
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
323-601 |
1.53e-94 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 301.34 E-value: 1.53e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 323 LQESLQQENHQlseqllSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKI 402
Cdd:COG3283 188 LGEQLQALQVN------DDSGFDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLAL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 403 NCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVR 482
Cdd:COG3283 262 NCAALPDDVAESELFGYAPGAFGNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVR 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 483 VIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPG 562
Cdd:COG3283 342 VICATQKDLAELVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPG 421
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 447174288 563 NVRELENVIERAVLLTRGNSLNL-HLNVRQSRLLPTLNED 601
Cdd:COG3283 422 NVRQLENALYRAVSLLEGDELTPeDLQLPEYAASAGLLDD 461
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
304-660 |
5.99e-90 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 289.84 E-value: 5.99e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 304 ADRIAIAVGNADAWRSMTDLQESLQQENHQlSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383
Cdd:TIGR02329 172 ADSVRQAFDDALDVARATRLRQAATLRSAT-RNQLRTRYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKEL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGA-INTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRV 462
Cdd:TIGR02329 251 VAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGArRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRV 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 463 LQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFtqkmARHMNR 542
Cdd:TIGR02329 331 LEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEY----LVQAAA 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 543 AIDAIPTEALRQ--------LMSWDWPGNVRELENVIERavlltrgnsLNLHLNVRQSRLLpTLNEDSALRSSMAQLLHP 614
Cdd:TIGR02329 407 ALRLPDSEAAAQvlagvadpLQRYPWPGNVRELRNLVER---------LALELSAMPAGAL-TPDVLRALAPELAEASGK 476
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 447174288 615 T-TPENDEEERQRIVQVL-RETNGIVAGPRGAATR-LGMKRTTLLSRMQ 660
Cdd:TIGR02329 477 GkTSALSLRERSRVEALAvRAALERFGGDRDAAAKaLGISRTTLWRRLK 525
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
318-664 |
6.55e-86 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 277.52 E-value: 6.55e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 318 RSMTDLQESLQQENHQLSEQllsnlgIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDK 397
Cdd:PRK10923 117 RAISHYQEQQQPRNIQVNGP------TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKA 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 398 PLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTI 477
Cdd:PRK10923 191 PFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPV 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 478 PVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMS 557
Cdd:PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 558 WDWPGNVRELENVIERAVLLTRGNSL----------NLHLNVRQSRLLP-------TLNEDSALRSSMAQLLHPTTPend 620
Cdd:PRK10923 351 LAWPGNVRQLENTCRWLTVMAAGQEVliqdlpgelfESTVPESTSQMQPdswatllAQWADRALRSGHQNLLSEAQP--- 427
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 447174288 621 EEERQRIVQVLRETNGivaGPRGAATRLGMKRTTLLSRMQRLGI 664
Cdd:PRK10923 428 ELERTLLTTALRHTQG---HKQEAARLLGWGRNTLTRKLKELGM 468
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
356-575 |
8.36e-82 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 261.91 E-value: 8.36e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 356 DLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRF 435
Cdd:PRK11608 17 EVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLEL 515
Cdd:PRK11608 97 ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 447174288 516 PPLRDRPEDIPLLAKHFTQKMARHMNRAI-DAIPTEALRQLMSWDWPGNVRELENVIERAV 575
Cdd:PRK11608 177 PPLRERQSDIMLMAEHFAIQMCRELGLPLfPGFTERARETLLNYRWPGNIRELKNVVERSV 237
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
339-667 |
1.36e-67 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 230.34 E-value: 1.36e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 339 LSNLGIGD------IIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLL 412
Cdd:PRK10820 192 LQNLAVNDdsafsqIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVV 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 413 ESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLW 492
Cdd:PRK10820 272 ESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLV 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 493 QMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIE 572
Cdd:PRK10820 352 ELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIY 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 573 RAVLLTRGNSLNLhlnvrQSRLLP------TLNEDsALRSSMAQLlhpttpeNDEEERQRIVQVLREtngiVAGPRGAAT 646
Cdd:PRK10820 432 RALTQLEGYELRP-----QDILLPdydaavAVGED-AMEGSLDEI-------TSRFERSVLTRLYRN----YPSTRKLAK 494
|
330 340
....*....|....*....|.
gi 447174288 647 RLGMKRTTLLSRMQRLGISVR 667
Cdd:PRK10820 495 RLGVSHTAIANKLREYGLSQK 515
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
332-664 |
7.13e-66 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 228.79 E-value: 7.13e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 332 HQLSEQLLSN--LGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPA 409
Cdd:PRK11388 310 RQLMTSQLGKvsHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 410 SLLESELFGHDKgafTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNR 489
Cdd:PRK11388 390 EALAEEFLGSDR---TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 490 DLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPtEALRQLMSWDWPGNVRELEN 569
Cdd:PRK11388 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDD-DALARLVSYRWPGNDFELRS 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 570 VIERAVLltrgNSLNLHLNVRQsrlLPT--LNEDSALRSSMAQLLHPTTPEndEEERQRIVQVLRETNGIVagpRGAATR 647
Cdd:PRK11388 546 VIENLAL----SSDNGRIRLSD---LPEhlFTEQATDDVSATRLSTSLSLA--ELEKEAIINAAQVCGGRI---QEMAAL 613
|
330
....*....|....*..
gi 447174288 648 LGMKRTTLLSRMQRLGI 664
Cdd:PRK11388 614 LGIGRTTLWRKMKQHGI 630
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
357-573 |
9.49e-41 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 156.53 E-value: 9.49e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 357 LLQQVDIVA-KSDSTVLICGETGTGKEVIARAIHQLSPRRDK---PLVKINCAAIPASLLESELFGHDKGAFTGAINTHR 432
Cdd:COG4650 196 LIEQIERVAiRSRAPILLTGPTGAGKSQLARRIYELKKARHQvsgRFVEVNCATLRGDGAMSALFGHVKGAFTGAVSDRA 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 433 GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFP 512
Cdd:COG4650 276 GLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWT 355
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 447174288 513 LELPPLRDRPEDIP-----LLAKhFTQKMARH--MNRaidaiptEA----LRQLMSWD--WPGNVRELENVIER 573
Cdd:COG4650 356 FRLPGLAERREDIEpnldyELAR-FAREQGRRvrFNK-------EAraryLAFATSPEalWSGNFRDLNASVTR 421
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
371-571 |
9.12e-36 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 144.48 E-value: 9.12e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 371 VLICGETGTGKEVIARAIHQ-------LSPrrDKPLVKINCA--AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGG 441
Cdd:COG1221 133 TLILGPTGVGKSFFAELMYEyaieigvLPE--DAPFVVFNCAdyANNPQLLMSQLFGYVKGAFTGADKDKEGLIEKADGG 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 442 TLFLDEIGDLPLELQPKLLRVLQEREIERLGGS-RTIPVNVRVIAATNrdlwqmvEDRQfrSDLfyrLNVF----PL--E 514
Cdd:COG1221 211 ILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGETeKTRKANVRIIFATT-------EDPE--SSL---LKTFlrriPMviK 278
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 447174288 515 LPPLRDRP--EDIPLLaKHFTQKMARHMNRAIDaIPTEALRQLMSWDWPGNVRELENVI 571
Cdd:COG1221 279 LPSLEERSleERLELI-KHFFKEEAKRLNKPIK-VSKEVLKALLLYDCPGNIGQLKSDI 335
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
354-509 |
1.02e-26 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 106.08 E-value: 1.02e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 354 MEDLLQQVDIVAKSDS--TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDkgaftgAINTH 431
Cdd:cd00009 3 QEEAIEALREALELPPpkNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVRLL 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 447174288 432 RGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIerlggSRTIPVNVRVIAATNRDlwqmvEDRQFRSDLFYRLN 509
Cdd:cd00009 77 FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLND-----LRIDRENVRVIGATNRP-----LLGDLDRALYDRLD 144
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
351-518 |
2.01e-22 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 93.56 E-value: 2.01e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 351 SQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESelfghdkgaftgaint 430
Cdd:pfam14532 4 SAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ---------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 431 hrgrfeiADGGTLFLDEIGDLPLELQPKLLRVLQEREierlggsrtiPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNV 510
Cdd:pfam14532 68 -------AKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFELSA 130
|
....*...
gi 447174288 511 FPLELPPL 518
Cdd:pfam14532 131 LRLHVPPL 138
|
|
| GAF |
smart00065 |
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these ... |
169-321 |
7.27e-17 |
|
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Pssm-ID: 214500 [Multi-domain] Cd Length: 149 Bit Score: 77.81 E-value: 7.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 169 DLDDLIADVAREIHHFFGLASVSMVLGDHrkNEKFSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRADDLF 248
Cdd:smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDE--NDRGELVLVAADGLTLPTLGIRFPLDEGLAGRVAETGRPLNIPDVEADP 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 447174288 249 LWQRDPLLLLLasnGCESALLIPLTFGNHTPGALLLAH-TSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMT 321
Cdd:smart00065 79 LFAEDLLGRYQ---GVRSFLAVPLVADGELVGVLALHNkKSPRPFTEEDEELLQALANQLAIALANAQLYEELR 149
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
370-490 |
6.39e-13 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 66.63 E-value: 6.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 370 TVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLE--SELFGHDKGAFTGAINTHRGRFEIA---DGGTLF 444
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDqlLLIIVGGKKASGSGELRLRLALALArklKPDVLI 83
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 447174288 445 LDEIGDLpleLQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRD 490
Cdd:smart00382 84 LDEITSL---LDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDE 126
|
|
| GAF |
COG2203 |
GAF domain [Signal transduction mechanisms]; |
123-670 |
1.53e-10 |
|
GAF domain [Signal transduction mechanisms];
Pssm-ID: 441805 [Multi-domain] Cd Length: 712 Bit Score: 64.44 E-value: 1.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 123 LARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEK 202
Cdd:COG2203 161 TDLVGQLAALAGLILDIARLLTQRARLELERLALLNEISQALRSALDLEELLQRILELAGELLGADRGAILLVDEDGGEL 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 203 FSLWCSDLSASHCACLPRcmpgESVLLTQTLQTRQPTLTHRADDLFLWqRDPLLLLLASNGCESALLIPLTFGNHTPGAL 282
Cdd:COG2203 241 ELVAAPGLPEEELGRLPL----GEGLAGRALRTGEPVVVNDASTDPRF-APSLRELLLALGIRSLLCVPLLVDGRLIGVL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 283 LLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVD 362
Cdd:COG2203 316 ALYSKEPRAFTEEDLELLEALADQAAIAIERARLYEALEAALAALLQELALLRLLLDLELTLLRLRQLLLELLLALLLLL 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 363 IVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGT 442
Cdd:COG2203 396 SLLGAELLLLLLDAADLSGLLALEGLLLLDLLLLLLLLRRILLLRVLRRLLLGDEEGLVLLLALAELELLEILELLVLLA 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 443 LFLDEIGDLPLELQpkLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRP 522
Cdd:COG2203 476 VILLALALLAALLL--LLLLLLALLALSALAVLASLLLALLLLLLLLLLLLLLGLLAALAADLLLLAAALLEDLLILLLV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 523 EDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS 602
Cdd:COG2203 554 LLLERELLTLVGVLLLLGLSVLLIELALALILALALLELLLVAVGDLLLLERDLLLLLVLLVRLLLELLVVTLELTVLVV 633
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 447174288 603 ALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL 670
Cdd:COG2203 634 LAAVEDSALLLRLALALASLVLLRALLATELDLILDSSLLLGLLLLGALLLLGGGLALLLSIGLGLGV 701
|
|
| GAF |
pfam01590 |
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl ... |
169-311 |
6.10e-09 |
|
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54. This domain can bind biliverdine and phycocyanobilin (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 460259 [Multi-domain] Cd Length: 133 Bit Score: 54.79 E-value: 6.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 169 DLDDLIADVAREIHHFFGLASVSMVLGDhrknekfSLWCSDLSASHCACLPRCMPGESVLLTQTLQTRQPTLTHRA--DD 246
Cdd:pfam01590 1 DLEEILQTILEELRELLGADRCALYLPD-------ADGLEYLPPGARWLKAAGLEIPPGTGVTVLRTGRPLVVPDAagDP 73
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 447174288 247 LFLwqrdPLLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTlFSEENCQLLQHIADRIAIAV 311
Cdd:pfam01590 74 RFL----DPLLLLRNFGIRSLLAVPIIDDGELLGVLVLHHPRPP-FTEEELELLEVLADQVAIAL 133
|
|
| GAF_2 |
pfam13185 |
GAF domain; The GAF domain is named after some of the proteins it is found in, including ... |
167-311 |
5.29e-07 |
|
GAF domain; The GAF domain is named after some of the proteins it is found in, including cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA. It is also found in guanylyl cyclases and phytochromes. The structure of a GAF domain shows that the domain shares a similar fold with the PAS domain. This domain can bind O2, CO and NO (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 433019 [Multi-domain] Cd Length: 137 Bit Score: 49.39 E-value: 5.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 167 HLDLDDLIADVAREIHHFfGLASVSmVLGDHRKNEKFSLWcSDLSASHCAClPRCMPGESvLLTQTLQTRQPTLTHRADD 246
Cdd:pfam13185 1 AADLEELLDAVLEAAVEL-GASAVG-FILLVDDDGRLAAW-GGAADELSAA-LDDPPGEG-LVGEALRTGRPVIVNDLAA 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 447174288 247 LFLWQRDPLLLLlasnGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAV 311
Cdd:pfam13185 76 DPAKKGLPAGHA----GLRSFLSVPLVSGGRVVGVLALGSNRPGAFDEEDLELLELLAEQAAIAI 136
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
371-489 |
2.34e-06 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 47.29 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 371 VLICGETGTGKEVIARAI-HQLSPRrdkPLVKINCaaiPASLLESELFGH-----DKGAFTGAINTHRGRfeiaDGGTLF 444
Cdd:pfam07728 2 VLLVGPPGTGKTELAERLaAALSNR---PVFYVQL---TRDTTEEDLFGRrnidpGGASWVDGPLVRAAR----EGEIAV 71
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 447174288 445 LDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPV---NVRVIAATNR 489
Cdd:pfam07728 72 LDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMNP 119
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
371-575 |
1.03e-04 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 44.49 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 371 VLICGETGTGKEVIARAI-HQLsprrDKPLVKINCAAipaslLESELFGhdkgafTGAINTHRgRFEIA--DGGTLFLDE 447
Cdd:COG1223 38 ILFYGPPGTGKTMLAEALaGEL----KLPLLTVRLDS-----LIGSYLG------ETARNLRK-LFDFArrAPCVIFFDE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 448 IGDLPLE-----LQPKLLRV----LQEREierlggsrTIPVNVRVIAATNRDlwQMVeDRQFRSdlfyRlnvFPLELP-P 517
Cdd:COG1223 102 FDAIAKDrgdqnDVGEVKRVvnalLQELD--------GLPSGSVVIAATNHP--ELL-DSALWR----R---FDEVIEfP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 518 LRDRpEDIPLLAKHFTQKMARHMNRAIDAIP--TEALRQlmswdwpgnvRELENVIERAV 575
Cdd:COG1223 164 LPDK-EERKEILELNLKKFPLPFELDLKKLAkkLEGLSG----------ADIEKVLKTAL 212
|
|
| MCM |
cd17706 |
MCM helicase family; MCM helicases are a family of helicases that play an important role in ... |
357-488 |
1.46e-03 |
|
MCM helicase family; MCM helicases are a family of helicases that play an important role in replication and homologous recombination repair. The heterohexameric ring-shaped Mcm2-7 complex is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases. Mcm8 and Mcm9, form a complex required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350658 [Multi-domain] Cd Length: 311 Bit Score: 41.17 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 357 LLQQVDIVAKS---------DSTVLICGETGTGKEVIARAIHQLSPRRdkplVKINCAAIPASLLESELfghDKGAFTGA 427
Cdd:cd17706 21 LLQLFGGVQKIledgtrirgDIHILLVGDPGTAKSQILKYVLKIAPRG----VYTSGKGSSGAGLTAAV---VRDSETGE 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 447174288 428 INTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVR--VIAATN 488
Cdd:cd17706 94 WYLEAGALVLADGGVCCIDEFDKMKELDRTALHEAMEQQTISIAKAGIVTTLNARcsILAAAN 156
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
620-661 |
5.08e-03 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 35.06 E-value: 5.08e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 447174288 620 DEEERQRIVQVLRETNGIVAGprgAATRLGMKRTTLLSRMQR 661
Cdd:pfam02954 2 EEVEKELIEAALERTGGNKSK---AARLLGISRRTLYRKLKK 40
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
371-489 |
7.08e-03 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 37.19 E-value: 7.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 371 VLICGETGTGKEVIARAIHQLSprrDKPLVKINCaaipaslleSELFGHDKGAFTGAInthRGRFEIADGGT---LFLDE 447
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL---GAPFIEISG---------SELVSKYVGESEKRL---RELFEAAKKLApcvIFIDE 65
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 447174288 448 I-----------GDLPLELQPKLLRVLQereierlgGSRTIPVNVRVIAATNR 489
Cdd:pfam00004 66 IdalagsrgsggDSESRRVVNQLLTELD--------GFTSSNSKVIVIAATNR 110
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
371-488 |
9.98e-03 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 38.61 E-value: 9.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447174288 371 VLICGETGTGKEVIARAIHQLSprrDKPLVKINCAaipASLLESELFGHDKgaftgaINTHRGRFEIADG----GTLFLD 446
Cdd:COG0714 34 LLLEGVPGVGKTTLAKALARAL---GLPFIRIQFT---PDLLPSDILGTYI------YDQQTGEFEFRPGplfaNVLLAD 101
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 447174288 447 EIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488
Cdd:COG0714 102 EINRAPPKTQSALLEAMEERQVTIPGGTYKLPEPFLVIATQN 143
|
|
| |
