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Conserved domains on  [gi|447201676|ref|WP_001278932|]
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flagellar biosynthesis protein FlhB [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flhB super family cl19167
flagellar type III secretion system protein FlhB;
1-380 0e+00

flagellar type III secretion system protein FlhB;


The actual alignment was detected with superfamily member PRK12468:

Pssm-ID: 473144  Cd Length: 386  Bit Score: 547.71  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   1 MSDESD-DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILG 79
Cdd:PRK12468   1 MAEDSDqEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSAMVAQGLHFDHSMVSNDKQMLR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  80 QIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVT 159
Cdd:PRK12468  81 QIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 160 GFFLWHHWPHMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHV 239
Cdd:PRK12468 161 GLFLWHNWPDMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 240 KGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLAR 319
Cdd:PRK12468 241 KGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLAR 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 447201676 320 ALYRHVEIGQQIPGQLYAAVAEVLAWVWQLKRWRLAGGQRPVQPTHLPVPEALDFINEKPT 380
Cdd:PRK12468 321 ALFRHSEVGQHIPATLYAAVAEVLAWVYQLKRWKREGGLIPKKPEHLPVPEALDFATESET 381
 
Name Accession Description Interval E-value
flhB PRK12468
flagellar biosynthesis protein FlhB; Reviewed
 1-380 0e+00

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 171522  Cd Length: 386  Bit Score: 547.71  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   1 MSDESD-DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILG 79
Cdd:PRK12468   1 MAEDSDqEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSAMVAQGLHFDHSMVSNDKQMLR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  80 QIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVT 159
Cdd:PRK12468  81 QIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 160 GFFLWHHWPHMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHV 239
Cdd:PRK12468 161 GLFLWHNWPDMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 240 KGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLAR 319
Cdd:PRK12468 241 KGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLAR 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 447201676 320 ALYRHVEIGQQIPGQLYAAVAEVLAWVWQLKRWRLAGGQRPVQPTHLPVPEALDFINEKPT 380
Cdd:PRK12468 321 ALFRHSEVGQHIPATLYAAVAEVLAWVYQLKRWKREGGLIPKKPEHLPVPEALDFATESET 381
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-351 1.14e-174

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 490.01  E-value: 1.14e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   1 MSDESD-DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILG 79
Cdd:COG1377    1 MAEEDDgEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFARALALDPADLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  80 QIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVT 159
Cdd:COG1377   81 LLGALLLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 160 GFFLWHHWPHMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHV 239
Cdd:COG1377  161 YLVLRGELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 240 KGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLAR 319
Cdd:COG1377  241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLAR 320

                        330       340       350
                 ....*....|....*....|....*....|..
gi 447201676 320 ALYRHVEIGQQIPGQLYAAVAEVLAWVWQLKR 351
Cdd:COG1377  321 ALYATVEVGQEIPEELYQAVAEVLAYVYQLKR 352
flhB TIGR00328
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ...
 7-353 2.51e-174

flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 129428  Cd Length: 347  Bit Score: 489.08  E-value: 2.51e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676    7 DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQIILLIR 86
Cdd:TIGR00328   1 EKTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVLSLLFFGDGLADLLVVLMSFFLSFETSDILNLGSLVGIFFQSIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   87 EAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHH 166
Cdd:TIGR00328  81 EVLLLLLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  167 WPHMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQM 246
Cdd:TIGR00328 161 LGELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  247 QRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHVE 326
Cdd:TIGR00328 241 QREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVE 320

                         330       340
                  ....*....|....*....|....*..
gi 447201676  327 IGQQIPGQLYAAVAEVLAWVWQLKRWR 353
Cdd:TIGR00328 321 IGQEIPPELYKAVAEVLAYVYKLKKKR 347
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 7-346 8.74e-159

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 449.20  E-value: 8.74e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676    7 DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSAGLHFDHSIikDPNLILGQIILLIR 86
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDRAA--DPAALLALLLALLL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   87 EAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHH 166
Cdd:pfam01312  79 ELLLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGN 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  167 WPHMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQM 246
Cdd:pfam01312 159 LPELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  247 QRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHVE 326
Cdd:pfam01312 239 QREMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVE 318

                         330       340
                  ....*....|....*....|
gi 447201676  327 IGQQIPGQLYAAVAEVLAWV 346
Cdd:pfam01312 319 VGQEIPEELYQAVAEVLAYV 338
 
Name Accession Description Interval E-value
flhB PRK12468
flagellar biosynthesis protein FlhB; Reviewed
 1-380 0e+00

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 171522  Cd Length: 386  Bit Score: 547.71  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   1 MSDESD-DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILG 79
Cdd:PRK12468   1 MAEDSDqEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSAMVAQGLHFDHSMVSNDKQMLR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  80 QIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVT 159
Cdd:PRK12468  81 QIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 160 GFFLWHHWPHMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHV 239
Cdd:PRK12468 161 GLFLWHNWPDMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 240 KGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLAR 319
Cdd:PRK12468 241 KGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLAR 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 447201676 320 ALYRHVEIGQQIPGQLYAAVAEVLAWVWQLKRWRLAGGQRPVQPTHLPVPEALDFINEKPT 380
Cdd:PRK12468 321 ALFRHSEVGQHIPATLYAAVAEVLAWVYQLKRWKREGGLIPKKPEHLPVPEALDFATESET 381
flhB PRK05702
flagellar type III secretion system protein FlhB;
1-358 0e+00

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 537.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   1 MSDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQ 80
Cdd:PRK05702   2 AEDDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLSL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  81 IILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTG 160
Cdd:PRK05702  82 FLLLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVAY 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 161 FFLWHHWPHMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Cdd:PRK05702 162 FVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVK 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARA 320
Cdd:PRK05702 242 GRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLARA 321

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 447201676 321 LYRHVEIGQQIPGQLYAAVAEVLAWVWQLKRWRLAGGQ 358
Cdd:PRK05702 322 LYATVEIGQEIPEELYKAVAEVLAYVYQLKRWRKGGGQ 359
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-351 1.14e-174

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 490.01  E-value: 1.14e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   1 MSDESD-DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILG 79
Cdd:COG1377    1 MAEEDDgEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFARALALDPADLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  80 QIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVT 159
Cdd:COG1377   81 LLGALLLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 160 GFFLWHHWPHMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHV 239
Cdd:COG1377  161 YLVLRGELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 240 KGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLAR 319
Cdd:COG1377  241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLAR 320

                        330       340       350
                 ....*....|....*....|....*....|..
gi 447201676 320 ALYRHVEIGQQIPGQLYAAVAEVLAWVWQLKR 351
Cdd:COG1377  321 ALYATVEVGQEIPEELYQAVAEVLAYVYQLKR 352
flhB TIGR00328
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ...
 7-353 2.51e-174

flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 129428  Cd Length: 347  Bit Score: 489.08  E-value: 2.51e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676    7 DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQIILLIR 86
Cdd:TIGR00328   1 EKTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVLSLLFFGDGLADLLVVLMSFFLSFETSDILNLGSLVGIFFQSIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   87 EAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHH 166
Cdd:TIGR00328  81 EVLLLLLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  167 WPHMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQM 246
Cdd:TIGR00328 161 LGELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  247 QRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHVE 326
Cdd:TIGR00328 241 QREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVE 320

                         330       340
                  ....*....|....*....|....*..
gi 447201676  327 IGQQIPGQLYAAVAEVLAWVWQLKRWR 353
Cdd:TIGR00328 321 IGQEIPPELYKAVAEVLAYVYKLKKKR 347
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 7-346 8.74e-159

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 449.20  E-value: 8.74e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676    7 DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSAGLHFDHSIikDPNLILGQIILLIR 86
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDRAA--DPAALLALLLALLL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   87 EAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHH 166
Cdd:pfam01312  79 ELLLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGN 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  167 WPHMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIRQM 246
Cdd:pfam01312 159 LPELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  247 QRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHVE 326
Cdd:pfam01312 239 QREMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVE 318

                         330       340
                  ....*....|....*....|
gi 447201676  327 IGQQIPGQLYAAVAEVLAWV 346
Cdd:pfam01312 319 VGQEIPEELYQAVAEVLAYV 338
PRK12772 PRK12772
fused FliR family export protein/FlhB family type III secretion system protein;
5-351 8.68e-83

fused FliR family export protein/FlhB family type III secretion system protein;


Pssm-ID: 237199 [Multi-domain]  Cd Length: 609  Bit Score: 264.23  E-value: 8.68e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   5 SDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSAGLHFD-HSIIKDPNLILGQIIL 83
Cdd:PRK12772 262 SDDKTEEATPKKKSDARKKGQIAKSKELALAITLLACTLVLSALGGYVANTLKETMIYFLNNYlNMNLNYNSLNSLAIIT 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  84 LIREAMLaLLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFL 163
Cdd:PRK12772 342 LLRVAKI-FLPVALPIMVFGVAANLLQTGFLFTKEPLKPDLKKLNPINGFKRMFSMRSVMELLKDLTIITIVGIVGYKFL 420

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 164 WHHWPHMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRI 243
Cdd:PRK12772 421 QDNYLDILNLGNLYLPYIITELKSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKI 500

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 244 RQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYR 323
Cdd:PRK12772 501 KQKQREMAMQRMMQEVPKATVVVTNPTHIAVALKYEEGKDEAPKVVAKGADYVALKIKEIAKENDVPIIENKPLARLIYK 580

                        330       340
                 ....*....|....*....|....*...
gi 447201676 324 HVEIGQQIPGQLYAAVAEVLAWVWQLKR 351
Cdd:PRK12772 581 KVEIDQEIPQDMYQAVAEILAIVYKLKK 608
EscU COG4792
Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and ...
 1-349 3.90e-81

Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443821  Cd Length: 344  Bit Score: 251.74  E-value: 3.90e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   1 MSDEsddKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSA-----GLHFDHSIikdpn 75
Cdd:COG4792    1 MSSE---KTEQPTPKKLRDARKKGQVAKSKDIVSAVQLLALLGYLLLEGDALVEHLQALILLpaqllNLPFDEAL----- 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  76 liLGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILV 155
Cdd:COG4792   73 --NQLLGALLELLLRLVLPLLAVLILATILSNVAQVGFLFATEAIKPKLEKINPVENLKRIFSLRSLVELLKSLLKVVLL 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 156 GSVTGFFLWHHWPHMMRLmaesPITAMGNAMDLVG---------LCALLVVLGVIpmvgfDVFFQIFSHLKKLRMSRQDI 226
Cdd:COG4792  151 GLIFYYLLRGYLPTLVYL----PYCGLACAGPVVGallkwlwgvLLGAYLVFGLA-----DYLFQRYQFRKQLRMSKDEV 221

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 227 RDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAE 306
Cdd:COG4792  222 KREYKDMEGDPEIKQKRRRLHREIQSGSLALNVKRSSVVVRNPTHIAVGLRYVPGETPLPVVLEKGEDARAQQIVKLAEE 301

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 447201676 307 NNVPTLEAPPLARALYRHVEIGQQIPGQLYAAVAEVLAWVWQL 349
Cdd:COG4792  302 EGVPVVENIPLARALYADAGLGEYIPEDLFEPVAEVLRLALLL 344
FlhB_rel_III TIGR01404
type III secretion protein, YscU/HrpY family; This model represents one of several families of ...
 6-349 1.51e-80

type III secretion protein, YscU/HrpY family; This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130471  Cd Length: 342  Bit Score: 250.27  E-value: 1.51e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676    6 DDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGML-----SAGLHFDHSIikdpnliLGQ 80
Cdd:TIGR01404   1 AEKTEKPTPKKLRDARKKGQVAKSKDLTSAVLLLAGFFYLLSLASVFEEMLIALLilpldFDDQPFAYAL-------AQV 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   81 IILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTG 160
Cdd:TIGR01404  74 LSGLLQLILTVLLPLLAIVLLAGVLSGLLQVGFVLATEALKPDLSKLNPISGLKQIFSLRSLKELLKSILKLVALALIFY 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  161 FFLWHHWPHMMRLMAESPITAMGNAMDLVGLcALLVVLGVIPMVG-FDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHV 239
Cdd:TIGR01404 154 LFLKNYLKELFALPYCGLDGLAPIVGELLKL-LILVCLGFFLVVGlADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  240 KGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLAR 319
Cdd:TIGR01404 233 KSKRRELHQEILSEQLKSDVKRSTLVVANPTHIAIGIYYKPGETPLPLIICKGTDAQALAVRAYAEEAGIPVVRDIPLAR 312

                         330       340       350
                  ....*....|....*....|....*....|
gi 447201676  320 ALYRHVEIGQQIPGQLYAAVAEVLAWVWQL 349
Cdd:TIGR01404 313 QLYRTARVGQYIPEELFEAVAELLRWLEQV 342
flhB PRK13109
flagellar biosynthesis protein FlhB; Reviewed
 1-346 3.62e-62

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183864  Cd Length: 358  Bit Score: 203.49  E-value: 3.62e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   1 MSDESD--DKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVSVIWFGGVS-LARRLSGMLSAGLHFDhsiIKDP 74
Cdd:PRK13109   1 MSDDTDkeSKTEEATERKVRDAIEKGDIPVSREapvFASMLGLLIALAFFARGQAAqLTGDLAPLLDDPRGFS---LETG 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  75 NLILGQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTIL 154
Cdd:PRK13109  78 ADAMLLLSRVALAAGRFLLPILLILAVCGLAASLLQNLPRFVLDRIQPKWSRISPMKGWTRIFGTSGQVEFLKSLFKFLS 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 155 VGSVTGFFLWHHWPHMMRLMAESPITA----MGNAMDLVGLcallVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEF 230
Cdd:PRK13109 158 VSVVVLLLLRSERAKAVNAMFVDPSQLpeliLTVAIRLVSA----VAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEH 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 231 KQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVP 310
Cdd:PRK13109 234 KQAEGDPSVKARLRSLAQDRARNRMLANVPRATLVIANPTHFAIALRYERSENPAPLVVAKGQDLIALKIREIAEENGIP 313

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 447201676 311 TLEAPPLARALYRHVEIGQQIPGQLYAAVAEVLAWV 346
Cdd:PRK13109 314 VIEDKPLARSLYDAVQVDQVIPAEFYRPVAQILYFL 349
PRK12721 PRK12721
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
7-343 5.11e-59

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 183700  Cd Length: 349  Bit Score: 194.89  E-value: 5.11e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   7 DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLSAGLHfdhSIIKDPNLILGQIILLIR 86
Cdd:PRK12721   3 EKTEKPTEKKLRDARKKGQVVKSVEITSGVQLAALLLYFLLEGPSLVEAIIGLINSTIQ---LLNKPFLYALTQILGAVL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  87 EAMLALLPLISGVVLVALISPVMLG-GLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWH 165
Cdd:PRK12721  80 EVLLRFLLVLGAGLIVATVGTGIAQvGPLLASKAIGPKAEKINPVSNAKQIFSLKSVFELCKSLLKVVILSLIFAYLLHY 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 166 HWP---HMMRLMAES--PITAMGNAMDLVGLCALLVVLGVipmvgFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVK 240
Cdd:PRK12721 160 YAPsfaYLPYCGAACglPVVSTLIFWLWGGLLACYLVFGI-----LDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIK 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 241 GRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARA 320
Cdd:PRK12721 235 QKRRELQSEIQSGSLANNVKKSTAVVRNPTHIAVCLYYHPGETPLPRVLEKGKDAQALHIVKLAERNGIPVVENIPLARA 314

                        330       340
                 ....*....|....*....|...
gi 447201676 321 LYRHVEIGQQIPGQLYAAVAEVL 343
Cdd:PRK12721 315 LFKEVECGDYIPETLFEPVAALL 337
PRK06298 PRK06298
type III secretion system protein; Validated
 7-350 3.56e-42

type III secretion system protein; Validated


Pssm-ID: 180519  Cd Length: 356  Bit Score: 151.16  E-value: 3.56e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   7 DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGMLsAGLHFDHSIIKDPNLILGQIILLIR 86
Cdd:PRK06298   3 EKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLSSFFAKHLGSFL-VSIFKTAPTNHDPVVTVYYLKNCLI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  87 EAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTGFFLWHH 166
Cdd:PRK06298  82 LILTASLPLLGAVAFVGVLVGFLIVGPTFSTEVFKPDIKKFNPIDNLKQKFKVKTLIELLKSILKISGAALILYIVLKNR 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 167 WPHMMRLMAESPITA-------MGNAMDLVGLCALLVVLgvipmvgFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHV 239
Cdd:PRK06298 162 VPLIIETAGVPPLVTaqifkeiLYKAVTSIGIFFLVVAV-------LDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEI 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 240 KGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLAR 319
Cdd:PRK06298 235 KGRRRQIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGVPIMRNVPLAH 314

                        330       340       350
                 ....*....|....*....|....*....|.
gi 447201676 320 ALYRHVEIGQQIPGQLYAAVAEVLAWVWQLK 350
Cdd:PRK06298 315 QLLDEGKELKFIPESTYEAIGEILLYITSLN 345
flhB PRK12773
flagellar biosynthesis protein FlhB; Reviewed
 4-351 1.04e-33

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183737  Cd Length: 646  Bit Score: 132.11  E-value: 1.04e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   4 ESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGGVSLARRLSGML-----SAGLHFDHSiikdPNLIL 78
Cdd:PRK12773 296 EDEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILrkyihGVGLRTDMS----SESVT 371

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  79 GQIILLIREAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPlpGIKRMF-SAQTGAELLKAILKTILVGS 157
Cdd:PRK12773 372 ELLKNASTDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLpTRQTLFNLGKSLAKVGLIAW 449

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 158 VTGFFLWHHW-PHMM--RLMAESPITAMGNAMDLVGLCALLVVLGVIPMvgfDVFFQIFSHLKKLRMSRQDIRDEFKQSE 234
Cdd:PRK12773 450 VSYIIISKDFfPILLsgEMGLEQAVALVMNSSFKIFLIVGIILLAISIV---DYLYQRYEYEESLKMTPSEAKREAKESD 526

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 235 GDPHVKGRIRQMQR-AAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLE 313
Cdd:PRK12773 527 GDRSLQARRRQLARdMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVE 606

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 447201676 314 APPLARALYRHVEIGQQIPGQLYAAVAEVLAWVWQLKR 351
Cdd:PRK12773 607 DRLQARGLYEEVELGAEVPQQFYRAIATILSRLESFRR 644
PRK08156 PRK08156
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
8-373 1.13e-33

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 236168  Cd Length: 361  Bit Score: 128.20  E-value: 1.13e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676   8 KTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSVIWFGG--VSLARRLSGMLSAGlhFDHSIikdpnliLGQIILLI 85
Cdd:PRK08156   4 KTEKPTKKKLRDSAKKGQSFKSKDLITAVVLLGGIAYLVSFGsfSEFMSIYKRILADN--FDINI-------GDYFLAVM 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676  86 REAMLALLPLISGVVLVALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILkTILVGSVTGFFLWH 165
Cdd:PRK08156  75 IIFLKILIPFLLLCLLAGALPTLLQTRFVLATEAIKLNFSALNPVKGLKKIFSLRTVKEFVKALL-YLIVFALTAYVFWK 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 166 HWPHMMRLMAESPITAMGNAMDLVGLCALLVVLGV-IPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKQSEGDPHVKGRIR 244
Cdd:PRK08156 154 NYKKEIFSQLNGNIVGLIVIWRELLVKLVLTFLACaLIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRR 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447201676 245 QMQRAAARRRMMADVPKADVIVNNPTHYSVALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRH 324
Cdd:PRK08156 234 EAHQEILSEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVGVPVVRDIKLARRLYKT 313

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*....
gi 447201676 325 VEIGQQIPGQLYAAVAEVLAWvwqLKRWRLAGGQRPVQPThLPVPEALD 373
Cdd:PRK08156 314 HRRYSFVSLEDLDEVLRLLIW---LEQVENAGMGVPQPQE-NEVRSAEP 358
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 274-351 4.57e-28

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 105.65  E-value: 4.57e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 447201676 274 VALQYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRhVEIGQQIPGQLYAAVAEVLAWVWQLKR 351
Cdd:COG2257   12 VALKYDGEKDNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQ-LDLGDEIPPELYQAVAEILAFIYRLDG 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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