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Conserved domains on  [gi|447213371|ref|WP_001290627|]
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MULTISPECIES: aspartate-semialdehyde dehydrogenase [Bacillus]

Protein Classification

PRK06728 family protein( domain architecture ID 11482405)

PRK06728 family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK06728 PRK06728
aspartate-semialdehyde dehydrogenase; Provisional
1-347 0e+00

aspartate-semialdehyde dehydrogenase; Provisional


:

Pssm-ID: 136022 [Multi-domain]  Cd Length: 347  Bit Score: 691.79  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNITEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEV 80
Cdd:PRK06728   1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  81 SRQFVNQAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQA 160
Cdd:PRK06728  81 SRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 161 VSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMA 240
Cdd:PRK06728 161 VSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMA 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 241 ATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPDTPNGFHLW 320
Cdd:PRK06728 241 ATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPDTPNGFHLW 320
                        330       340
                 ....*....|....*....|....*..
gi 447213371 321 IVSDNLLKGAAWNSVQIAETMVEEGII 347
Cdd:PRK06728 321 IVSDNLLKGAAWNSVQIAETMVEEGII 347
 
Name Accession Description Interval E-value
PRK06728 PRK06728
aspartate-semialdehyde dehydrogenase; Provisional
1-347 0e+00

aspartate-semialdehyde dehydrogenase; Provisional


Pssm-ID: 136022 [Multi-domain]  Cd Length: 347  Bit Score: 691.79  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNITEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEV 80
Cdd:PRK06728   1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  81 SRQFVNQAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQA 160
Cdd:PRK06728  81 SRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 161 VSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMA 240
Cdd:PRK06728 161 VSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMA 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 241 ATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPDTPNGFHLW 320
Cdd:PRK06728 241 ATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPDTPNGFHLW 320
                        330       340
                 ....*....|....*....|....*..
gi 447213371 321 IVSDNLLKGAAWNSVQIAETMVEEGII 347
Cdd:PRK06728 321 IVSDNLLKGAAWNSVQIAETMVEEGII 347
Asd COG0136
Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]; ...
6-344 0e+00

Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]; Aspartate-semialdehyde dehydrogenase is part of the Pathway/BioSystem: Lysine biosynthesis


Pssm-ID: 439906 [Multi-domain]  Cd Length: 333  Bit Score: 540.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   6 YHVAVVGATGAVGQKIIELLEkETKFNITEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQFV 85
Cdd:COG0136    1 YNVAVVGATGAVGRVLLELLE-ERDFPVGELRLLASSRSAGKTVSFGGKELTVEDATDFDFSGVDIALFSAGGSVSKEYA 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  86 NQAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEH--KGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSG 163
Cdd:COG0136   80 PKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALADHlpKGIIANPNCSTIQMLVALKPLHDAAGIKRVVVSTYQAVSG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 164 SGIHAIQELKEQAKSILAGEEVESTILPakkdkkhYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMAATC 243
Cdd:COG0136  160 AGAAAMDELAEQTAALLNGEEIEPEVFP-------HPIAFNLIPQIDVFLENGYTKEEMKMVNETRKILGDPDIPVSATC 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 244 VRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPDTPNGFHLWIVS 323
Cdd:COG0136  233 VRVPVFRGHSEAVNIEFERPVSLEEARELLAAAPGVKVVDDPAENDYPTPLDASGTDEVFVGRIRKDLSVPNGLNLWVVA 312
                        330       340
                 ....*....|....*....|.
gi 447213371 324 DNLLKGAAWNSVQIAETMVEE 344
Cdd:COG0136  313 DNLRKGAALNAVQIAELLIKE 333
asd_B TIGR01296
aspartate-semialdehyde dehydrogenase (peptidoglycan organisms); Two closely related families ...
7-344 5.98e-163

aspartate-semialdehyde dehydrogenase (peptidoglycan organisms); Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. [Amino acid biosynthesis, Aspartate family]


Pssm-ID: 273543 [Multi-domain]  Cd Length: 338  Bit Score: 458.51  E-value: 5.98e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371    7 HVAVVGATGAVGQKIIELLEkETKFNITEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQFVN 86
Cdd:TIGR01296   1 NVAIVGATGAVGQEMLKLLE-ERNFPIDKLVLLASARSAGRKLTFKGKELEVEEAETESFEGIDIALFSAGGSVSKEFAP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   87 QAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEH--KGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGS 164
Cdd:TIGR01296  80 KAAKAGVIVIDNTSAFRMDPDVPLVVPEVNFEDLKEFnpKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVSGA 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  165 GIHAIQELKEQAKSILAGEEVESTILPaKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMAATCV 244
Cdd:TIGR01296 160 GNAGVEELYNQTKAVLEGAEQLPYIQP-KANKFPYQIAFNAIPHIDSFVDDGYTKEEQKMLFETRKIMGIPDLKVSATCV 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  245 RVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPDTPNGFHLWIVSD 324
Cdd:TIGR01296 239 RVPVFTGHSESINIEFEKEISPEDARELLKNAPGVQLIDDPSGNLYPTPLAAVGVDEVFVGRIRKDLPDGNGLHLWVVAD 318
                         330       340
                  ....*....|....*....|
gi 447213371  325 NLLKGAAWNSVQIAETMVEE 344
Cdd:TIGR01296 319 NLRKGAALNSVQIAELLIKN 338
ASADH_C_bac_euk_like cd18131
C-terminal catalytic domain of bacterial/eukaryotic aspartate beta-semialdehyde dehydrogenase ...
132-326 3.70e-102

C-terminal catalytic domain of bacterial/eukaryotic aspartate beta-semialdehyde dehydrogenase (ASADH) and similar proteins; The family corresponds to a new branch of bacterial aspartate beta-semialdehyde dehydrogenase (ASADH) enzymes that has a similar overall fold and domain organization but share less sequence homology with the other bacterial ASADHs. The second isoform of ASADH in Vibrio cholerae is one of the prototypes of this family. It also includes ASADHs from Streptococcus pneumoniae, Mycobacterium tuberculosis, Thermus thermophilus, as well as from eukaryotes. ASADH (EC 1.2.1.11), also called ASA dehydrogenase (ASD), or aspartate-beta-semialdehyde dehydrogenase, catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate, which is the second step of the aspartate biosynthetic pathway. ASA can either be further reduced to homoserine, which leads to methionine, threonine, or isoleucine, or it can be condensed with pyruvate and cyclized into dihydrodipicolinate, and then converted into diaminopimelate, a component of bacterial cell walls, and finally decarboxylated to produce lysine. ASADH contains an N-terminal Rossmann fold NAD(P) binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like catalytic domain and are members of the GAPDH superfamily of proteins.


Pssm-ID: 467681  Cd Length: 188  Bit Score: 298.66  E-value: 3.70e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 132 CSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPakkdkkhYPIAFNVLPQVDI 211
Cdd:cd18131    1 CSTIQMVVALKPLHDAFGLKRVVVSTYQAVSGAGAAAMEELEEQTRGLLNGKEAEPKVFP-------YQIAFNVIPHIDV 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 212 FTDNDFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYP 291
Cdd:cd18131   74 FLDNGYTKEEMKMVNETRKILGDPDLRVSATCVRVPVFRGHSESVNIEFEKPISVEEAREALAKAPGVVVVDDPANNVYP 153
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 447213371 292 MPLYAEGKIDTFVGRIRKDPDTPNGFHLWIVSDNL 326
Cdd:cd18131  154 TPLDAAGKDDVFVGRIRKDISVPNGLNLWVVGDNL 188
Semialdhyde_dhC pfam02774
Semialdehyde dehydrogenase, dimerization domain; This Pfam entry contains the following ...
141-328 1.92e-50

Semialdehyde dehydrogenase, dimerization domain; This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase.


Pssm-ID: 397067 [Multi-domain]  Cd Length: 167  Bit Score: 165.56  E-value: 1.92e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  141 LQPIR-KVFGLERIIVSTYQAVSGSGIHAiqelkeqaksilageevestilpaKKDKKHYPIAFNVLPQVDIFTDNDF-- 217
Cdd:pfam02774   1 LKPLRdALGGLERVIVDTYQAVSGAGKKA------------------------KPGVFGAPIADNLIPYIDGEEHNGTpe 56
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  218 TFEEVKMIQETKKILEDPNlKMAATCVRVPVISGHSESVYIELE-KEATVAEIKEVLFDAPGVILQDNPSEQlYPMPLYA 296
Cdd:pfam02774  57 TREELKMVNETKKILGFTP-KVSATCVRVPVFRGHSETVTVKLKlKPIDVEEVYEAFYAAPGVFVVVRPEED-YPTPRAV 134
                         170       180       190
                  ....*....|....*....|....*....|...
gi 447213371  297 EGKID-TFVGRIRKDPDTPNGFHLWIVSDNLLK 328
Cdd:pfam02774 135 RGGTNfVYVGRVRKDPDGDRGLKLVSVIDNLRK 167
Semialdhyde_dh smart00859
Semialdehyde dehydrogenase, NAD binding domain; The semialdehyde dehydrogenase family is found ...
7-123 6.08e-35

Semialdehyde dehydrogenase, NAD binding domain; The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.


Pssm-ID: 214863 [Multi-domain]  Cd Length: 123  Bit Score: 123.81  E-value: 6.08e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371     7 HVAVVGATGAVGQKIIELLEKETKFNITEvtLLSSKRSAGKTVQFKG---REIIIQEAKINSFE--GVDIAFFSAGGEVS 81
Cdd:smart00859   1 KVAIVGATGYVGQELLRLLAEHPDFELTA--LAASSRSAGKKVSEAGphlKGEVVLELDPPDFEelAVDIVFLALPHGVS 78
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 447213371    82 RQFVNQ---AVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEH 123
Cdd:smart00859  79 KESAPLlprAAAAGAVVIDLSSAFRMDDDVPYGLPEVNPEAIKKA 123
 
Name Accession Description Interval E-value
PRK06728 PRK06728
aspartate-semialdehyde dehydrogenase; Provisional
1-347 0e+00

aspartate-semialdehyde dehydrogenase; Provisional


Pssm-ID: 136022 [Multi-domain]  Cd Length: 347  Bit Score: 691.79  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNITEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEV 80
Cdd:PRK06728   1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  81 SRQFVNQAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQA 160
Cdd:PRK06728  81 SRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 161 VSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMA 240
Cdd:PRK06728 161 VSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMA 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 241 ATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPDTPNGFHLW 320
Cdd:PRK06728 241 ATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPDTPNGFHLW 320
                        330       340
                 ....*....|....*....|....*..
gi 447213371 321 IVSDNLLKGAAWNSVQIAETMVEEGII 347
Cdd:PRK06728 321 IVSDNLLKGAAWNSVQIAETMVEEGII 347
Asd COG0136
Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]; ...
6-344 0e+00

Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]; Aspartate-semialdehyde dehydrogenase is part of the Pathway/BioSystem: Lysine biosynthesis


Pssm-ID: 439906 [Multi-domain]  Cd Length: 333  Bit Score: 540.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   6 YHVAVVGATGAVGQKIIELLEkETKFNITEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQFV 85
Cdd:COG0136    1 YNVAVVGATGAVGRVLLELLE-ERDFPVGELRLLASSRSAGKTVSFGGKELTVEDATDFDFSGVDIALFSAGGSVSKEYA 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  86 NQAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEH--KGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSG 163
Cdd:COG0136   80 PKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALADHlpKGIIANPNCSTIQMLVALKPLHDAAGIKRVVVSTYQAVSG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 164 SGIHAIQELKEQAKSILAGEEVESTILPakkdkkhYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMAATC 243
Cdd:COG0136  160 AGAAAMDELAEQTAALLNGEEIEPEVFP-------HPIAFNLIPQIDVFLENGYTKEEMKMVNETRKILGDPDIPVSATC 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 244 VRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPDTPNGFHLWIVS 323
Cdd:COG0136  233 VRVPVFRGHSEAVNIEFERPVSLEEARELLAAAPGVKVVDDPAENDYPTPLDASGTDEVFVGRIRKDLSVPNGLNLWVVA 312
                        330       340
                 ....*....|....*....|.
gi 447213371 324 DNLLKGAAWNSVQIAETMVEE 344
Cdd:COG0136  313 DNLRKGAALNAVQIAELLIKE 333
PRK14874 PRK14874
aspartate-semialdehyde dehydrogenase; Provisional
5-342 0e+00

aspartate-semialdehyde dehydrogenase; Provisional


Pssm-ID: 237845 [Multi-domain]  Cd Length: 334  Bit Score: 530.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   5 GYHVAVVGATGAVGQKIIELLEkETKFNITEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQF 84
Cdd:PRK14874   1 GYNVAVVGATGAVGREMLNILE-ERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKY 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  85 VNQAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEH--KGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVS 162
Cdd:PRK14874  80 APKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHrkKGIIANPNCSTIQMVVALKPLHDAAGIKRVVVSTYQAVS 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 163 GSGIHAIQELKEQAKSILAGEevestILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMAAT 242
Cdd:PRK14874 160 GAGKAGMEELFEQTRAVLNAA-----VDPVEPKKFPKPIAFNVIPHIDVFMDDGYTKEEMKMVNETKKILGDPDLKVSAT 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 243 CVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPDTPNGFHLWIV 322
Cdd:PRK14874 235 CVRVPVFTGHSESVNIEFEEPISVEEAREILAEAPGVVLVDDPENGGYPTPLEAVGKDATFVGRIRKDLTVENGLHLWVV 314
                        330       340
                 ....*....|....*....|
gi 447213371 323 SDNLLKGAAWNSVQIAETMV 342
Cdd:PRK14874 315 SDNLRKGAALNAVQIAELLI 334
asd_B TIGR01296
aspartate-semialdehyde dehydrogenase (peptidoglycan organisms); Two closely related families ...
7-344 5.98e-163

aspartate-semialdehyde dehydrogenase (peptidoglycan organisms); Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. [Amino acid biosynthesis, Aspartate family]


Pssm-ID: 273543 [Multi-domain]  Cd Length: 338  Bit Score: 458.51  E-value: 5.98e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371    7 HVAVVGATGAVGQKIIELLEkETKFNITEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQFVN 86
Cdd:TIGR01296   1 NVAIVGATGAVGQEMLKLLE-ERNFPIDKLVLLASARSAGRKLTFKGKELEVEEAETESFEGIDIALFSAGGSVSKEFAP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   87 QAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEH--KGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGS 164
Cdd:TIGR01296  80 KAAKAGVIVIDNTSAFRMDPDVPLVVPEVNFEDLKEFnpKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVSGA 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  165 GIHAIQELKEQAKSILAGEEVESTILPaKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMAATCV 244
Cdd:TIGR01296 160 GNAGVEELYNQTKAVLEGAEQLPYIQP-KANKFPYQIAFNAIPHIDSFVDDGYTKEEQKMLFETRKIMGIPDLKVSATCV 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  245 RVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPDTPNGFHLWIVSD 324
Cdd:TIGR01296 239 RVPVFTGHSESINIEFEKEISPEDARELLKNAPGVQLIDDPSGNLYPTPLAAVGVDEVFVGRIRKDLPDGNGLHLWVVAD 318
                         330       340
                  ....*....|....*....|
gi 447213371  325 NLLKGAAWNSVQIAETMVEE 344
Cdd:TIGR01296 319 NLRKGAALNSVQIAELLIKN 338
PLN02383 PLN02383
aspartate semialdehyde dehydrogenase
1-342 1.12e-127

aspartate semialdehyde dehydrogenase


Pssm-ID: 178009 [Multi-domain]  Cd Length: 344  Bit Score: 369.48  E-value: 1.12e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   1 MSEKGYHVAVVGATGAVGQKIIELLEkETKFNITEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEV 80
Cdd:PLN02383   3 LTENGPSVAIVGVTGAVGQEFLSVLT-DRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSI 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  81 SRQFVNQAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEHK------GIIAVPNCSALQMVTALQPIRKVFGLERII 154
Cdd:PLN02383  82 SKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKlgkgkgALIANPNCSTIICLMAVTPLHRHAKVKRMV 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 155 VSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPakkdkkhYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILED 234
Cdd:PLN02383 162 VSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFA-------QQYAFNLFSHNAPMQENGYNEEEMKLVKETRKIWND 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 235 PNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPDTP 314
Cdd:PLN02383 235 DDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILASAPGVKIIDDRANNRFPTPLDASNKDDVAVGRIRQDISQD 314
                        330       340       350
                 ....*....|....*....|....*....|
gi 447213371 315 N--GFHLWIVSDNLLKGAAWNSVQIAETMV 342
Cdd:PLN02383 315 GnkGLDIFVCGDQIRKGAALNAVQIAELLL 344
ASADH_C_bac_euk_like cd18131
C-terminal catalytic domain of bacterial/eukaryotic aspartate beta-semialdehyde dehydrogenase ...
132-326 3.70e-102

C-terminal catalytic domain of bacterial/eukaryotic aspartate beta-semialdehyde dehydrogenase (ASADH) and similar proteins; The family corresponds to a new branch of bacterial aspartate beta-semialdehyde dehydrogenase (ASADH) enzymes that has a similar overall fold and domain organization but share less sequence homology with the other bacterial ASADHs. The second isoform of ASADH in Vibrio cholerae is one of the prototypes of this family. It also includes ASADHs from Streptococcus pneumoniae, Mycobacterium tuberculosis, Thermus thermophilus, as well as from eukaryotes. ASADH (EC 1.2.1.11), also called ASA dehydrogenase (ASD), or aspartate-beta-semialdehyde dehydrogenase, catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate, which is the second step of the aspartate biosynthetic pathway. ASA can either be further reduced to homoserine, which leads to methionine, threonine, or isoleucine, or it can be condensed with pyruvate and cyclized into dihydrodipicolinate, and then converted into diaminopimelate, a component of bacterial cell walls, and finally decarboxylated to produce lysine. ASADH contains an N-terminal Rossmann fold NAD(P) binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like catalytic domain and are members of the GAPDH superfamily of proteins.


Pssm-ID: 467681  Cd Length: 188  Bit Score: 298.66  E-value: 3.70e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 132 CSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPakkdkkhYPIAFNVLPQVDI 211
Cdd:cd18131    1 CSTIQMVVALKPLHDAFGLKRVVVSTYQAVSGAGAAAMEELEEQTRGLLNGKEAEPKVFP-------YQIAFNVIPHIDV 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 212 FTDNDFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYP 291
Cdd:cd18131   74 FLDNGYTKEEMKMVNETRKILGDPDLRVSATCVRVPVFRGHSESVNIEFEKPISVEEAREALAKAPGVVVVDDPANNVYP 153
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 447213371 292 MPLYAEGKIDTFVGRIRKDPDTPNGFHLWIVSDNL 326
Cdd:cd18131  154 TPLDAAGKDDVFVGRIRKDISVPNGLNLWVVGDNL 188
PRK08040 PRK08040
putative semialdehyde dehydrogenase; Provisional
1-344 9.97e-74

putative semialdehyde dehydrogenase; Provisional


Pssm-ID: 181205 [Multi-domain]  Cd Length: 336  Bit Score: 231.51  E-value: 9.97e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   1 MSEkGYHVAVVGATGAVGQKIIELLEkETKFNITEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEV 80
Cdd:PRK08040   1 MSE-GWNIALLGATGAVGEALLELLA-ERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  81 SRQFVNQAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEH--KGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTY 158
Cdd:PRK08040  79 SAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYrnRNIIAVADSLTSQLLTAIKPLIDQAGLSRLHVTNL 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 159 QAVSGSGIHAIQELKEQAKSILAGeevestiLPAKKDKKHYPIAFNVLPQVdifTDNDFTF-EEVKMIQETKKILEDPNL 237
Cdd:PRK08040 159 LSASAHGKAAVDALAGQSAKLLNG-------IPIEEGFFGRQLAFNMLPLL---PDSEGSVrEERRLVDQVRKILQDEGL 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 238 KMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDnpsEQLYPMPLY-AEGKIDTFVGRIRKDPDTPNG 316
Cdd:PRK08040 229 PISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALEQGEDIVLSE---ENDYPTQVGdASGNPHLSIGCVRNDYGMPEQ 305
                        330       340
                 ....*....|....*....|....*...
gi 447213371 317 FHLWIVSDNLLKGAAWNSVQIAETMVEE 344
Cdd:PRK08040 306 LQFWSVADNVRFGGALMAVKTAEKLVQE 333
PRK08664 PRK08664
aspartate-semialdehyde dehydrogenase; Reviewed
8-347 1.06e-70

aspartate-semialdehyde dehydrogenase; Reviewed


Pssm-ID: 236329 [Multi-domain]  Cd Length: 349  Bit Score: 223.93  E-value: 1.06e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   8 VAVVGATGAVGQKIIELLEKETKFNITEVTllSSKRSAGKT----VQFKG--------REIIIQEAKINSFEGVDIAFfS 75
Cdd:PRK08664   6 VGILGATGMVGQRFVQLLANHPWFEVTALA--ASERSAGKTygeaVRWQLdgpipeevADMEVVSTDPEAVDDVDIVF-S 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  76 A-----GGEVSRQFVnqavSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTL------KEHKG----IIAVPNCSALQMVTA 140
Cdd:PRK08664  83 AlpsdvAGEVEEEFA----KAGKPVFSNASAHRMDPDVPLVIPEVNPEHLelievqRKRRGwdgfIVTNPNCSTIGLVLA 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 141 LQPIRKvFGLERIIVSTYQAVSGSGihaiqelkeqaksilageevestilpakkdkkhypiaFNVLPQVDIfTDNDFTF- 219
Cdd:PRK08664 159 LKPLMD-FGIERVHVTTMQAISGAG-------------------------------------YPGVPSMDI-VDNVIPYi 199
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 220 --EEVKMIQETKKIL--------EDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDN-PS-- 286
Cdd:PRK08664 200 ggEEEKIEKETLKILgkfeggkiVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKGLPQELGlPSap 279
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 447213371 287 EQLY--------PMP---LYAEGKIDTFVGRIRKDPDtpNGFHLWIVSDNLLKGAAWNSVQIAETMVEEGII 347
Cdd:PRK08664 280 KKPIilfeepdrPQPrldRDAGDGMAVSVGRLREDGI--FDIKFVVLGHNTVRGAAGASVLNAELLKKKGYL 349
PRK05671 PRK05671
aspartate-semialdehyde dehydrogenase; Reviewed
8-342 4.13e-68

aspartate-semialdehyde dehydrogenase; Reviewed


Pssm-ID: 168165 [Multi-domain]  Cd Length: 336  Bit Score: 216.90  E-value: 4.13e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   8 VAVVGATGAVGQKIIELLEkETKFNITEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQFVNQ 87
Cdd:PRK05671   7 IAVVGATGTVGEALVQILE-ERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAAVSRSFAEK 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  88 AVSSGAIVIDNTSKYRMAHdVPLVVPEVNAHTLKEHKG--IIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGSG 165
Cdd:PRK05671  86 ARAAGCSVIDLSGALPSAQ-APNVVPEVNAERLASLAApfLVSSPSASAVALAVALAPLKGLLDIQRVQVTACLAVSSLG 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 166 IHAIQELKEQAKSILAGEEVESTILpakkDKKhypIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMAATCVR 245
Cdd:PRK05671 165 REGVSELARQTAELLNARPLEPRFF----DRQ---VAFNLLAQVGAPDAQGHTALERRLVAELRQLLGLPELKISVTCIQ 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 246 VPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDnpsEQLYPMPLY-AEGKIDTFVGRIRKDPDTPNGFHLWIVSD 324
Cdd:PRK05671 238 VPVFFGDSLSVALQSAAPVDLAAVNAALEAAPGIELVE---AGDYPTPVGdAVGQDVVYVGRVRAGVDDPCQLNLWLTSD 314
                        330
                 ....*....|....*...
gi 447213371 325 NLLKGAAWNSVQIAETMV 342
Cdd:PRK05671 315 NVRKGAALNAVQVAELLI 332
VcASADH2_like_N cd02316
N-terminal NAD(P)-binding domain of Vibrio cholerae aspartate beta-semialdehyde dehydrogenase ...
6-131 1.22e-65

N-terminal NAD(P)-binding domain of Vibrio cholerae aspartate beta-semialdehyde dehydrogenase 2 (ASADH2) and similar proteins; The family corresponds to a new branch of bacterial ASADH enzymes that has a similar overall fold and domain organization but sharing less sequence homology with the other bacterial ASADHs. The second isoform of ASADH in Vibrio cholerae is one of the prototypes of this family. It also includes ASADHs from Streptococcus pneumoniae, Mycobacterium tuberculosis, Thermus thermophilus, as well as from eukaryotes. ASADH (EC 1.2.1.11), also called ASA dehydrogenase (ASD), or aspartate-beta-semialdehyde dehydrogenase, catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate, which is the second step of the aspartate biosynthetic pathway. ASA can either be further reduced to homoserine, which leads to methionine, threonine, or isoleucine, or it can be condensed with pyruvate and cyclized into dihydrodipicolinate, and then converted into diaminopimelate, a component of bacterial cell walls, and finally decarboxylated to produce lysine. ASADH contains an N-terminal Rossmann fold NAD(P) binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like catalytic domain.


Pssm-ID: 467519 [Multi-domain]  Cd Length: 142  Bit Score: 203.82  E-value: 1.22e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   6 YHVAVVGATGAVGQKIIELLEkETKFNITEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQFV 85
Cdd:cd02316    1 YNVAIVGATGAVGQEMLKVLE-ERNFPVSELRLLASARSAGKTLEFKGKELTVEELTEDSFKGVDIALFSAGGSVSKEFA 79
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 447213371  86 NQAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEHKGIIAVPN 131
Cdd:cd02316   80 PIAAEAGAVVIDNSSAFRMDPDVPLVVPEVNPEALKNHKGIIANPN 125
ASADH_C_USG1_like cd18129
C-terminal domain of USG-1 protein and similar proteins; The family includes Escherichia coli ...
133-326 1.47e-59

C-terminal domain of USG-1 protein and similar proteins; The family includes Escherichia coli USG-1 protein, Pseudomonas aeruginosa USG-1 homolog proteins and similar proteins. Although its biological function remains unknown, it is found to be homologous to aspartate beta-semialdehyde dehydrogenase (ASADH) which contains an N-terminal Rossmann fold NAD(P) binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like domain. However, USG-1 proteins lack the conserved active site residues of the ASADH protein C-terminal domain.


Pssm-ID: 467679  Cd Length: 186  Bit Score: 189.71  E-value: 1.47e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 133 SALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAkkdkkhyPIAFNVLPQVDIF 212
Cdd:cd18129    2 AAIALARVLAPLHDAAGLERVVVTVLQPVSEAGQAGVDELARQTARLLNGQPVEPEVFPR-------QLAFNLLPQVGDF 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 213 TDNDFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPM 292
Cdd:cd18129   75 DADGLSDEERRIAAELRRLLGGPDLPVSVTCVQVPVFYGHSASVHVELAEPVDLEEVRAALAAAPGLELADDAEAPPYPV 154
                        170       180       190
                 ....*....|....*....|....*....|....
gi 447213371 293 PlyAEGKIDTFVGRIRKDPDTPNGFHLWIVSDNL 326
Cdd:cd18129  155 D--AAGSDDVLVGRVRQDPGNPRGLWLWAVADNL 186
Semialdhyde_dhC pfam02774
Semialdehyde dehydrogenase, dimerization domain; This Pfam entry contains the following ...
141-328 1.92e-50

Semialdehyde dehydrogenase, dimerization domain; This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase.


Pssm-ID: 397067 [Multi-domain]  Cd Length: 167  Bit Score: 165.56  E-value: 1.92e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  141 LQPIR-KVFGLERIIVSTYQAVSGSGIHAiqelkeqaksilageevestilpaKKDKKHYPIAFNVLPQVDIFTDNDF-- 217
Cdd:pfam02774   1 LKPLRdALGGLERVIVDTYQAVSGAGKKA------------------------KPGVFGAPIADNLIPYIDGEEHNGTpe 56
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  218 TFEEVKMIQETKKILEDPNlKMAATCVRVPVISGHSESVYIELE-KEATVAEIKEVLFDAPGVILQDNPSEQlYPMPLYA 296
Cdd:pfam02774  57 TREELKMVNETKKILGFTP-KVSATCVRVPVFRGHSETVTVKLKlKPIDVEEVYEAFYAAPGVFVVVRPEED-YPTPRAV 134
                         170       180       190
                  ....*....|....*....|....*....|...
gi 447213371  297 EGKID-TFVGRIRKDPDTPNGFHLWIVSDNLLK 328
Cdd:pfam02774 135 RGGTNfVYVGRVRKDPDGDRGLKLVSVIDNLRK 167
asd_EA TIGR00978
aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms); Two closely related ...
8-343 1.04e-49

aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms); Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. [Amino acid biosynthesis, Aspartate family]


Pssm-ID: 273376 [Multi-domain]  Cd Length: 341  Bit Score: 169.55  E-value: 1.04e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371    8 VAVVGATGAVGQKIIELLEKETKFNITEVTllSSKRSAGKT------VQFKG------REIIIQEAKINSFEGVDIAFFS 75
Cdd:TIGR00978   3 VAVLGATGLVGQKFVKLLAKHPYFELAKVV--ASPRSAGKRygeavkWIEPGdmpeyvRDLPIVEPEPVASKDVDIVFSA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   76 AGGEVSRQFVNQAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTL--------KEHKG-IIAVPNCSALQMVTALQPIRK 146
Cdd:TIGR00978  81 LPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLellkvqkeRGWKGfIVTNPNCTTAGLTLALKPLID 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  147 VFGLERIIVSTYQAVSGSGihaiqelkeqaksilageevestilpakkdkkhypiaFNVLPQVDIFtDNDFTF---EEVK 223
Cdd:TIGR00978 161 AFGIKKVHVTTMQAVSGAG-------------------------------------YPGVPSMDIL-DNIIPHiggEEEK 202
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  224 MIQETKKIL--------EDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKE------------VLFDAPG--VIL 281
Cdd:TIGR00978 203 IERETRKILgklengkiEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREalksfrglpqklGLPSAPEkpIIV 282
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 447213371  282 QDNPSEQLYPMPLYAEGKIDTFVGRIRKDPDTpngFHLWIVSDNLLKGAAWNSVQIAETMVE 343
Cdd:TIGR00978 283 RDEEDRPQPRLDRDAGGGMAVTVGRLREEGGS---LKYVVLGHNLVRGAAGATLLNAELAYK 341
ASADH_C cd18128
C-terminal catalytic domain of aspartate beta-semialdehyde dehydrogenase (ASADH) and similar ...
132-326 5.26e-49

C-terminal catalytic domain of aspartate beta-semialdehyde dehydrogenase (ASADH) and similar proteins; Aspartate beta-semialdehyde dehydrogenase (ASADH; EC 1.2.1.11), also called ASA dehydrogenase (ASD), or aspartate-beta-semialdehyde dehydrogenase, catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate, which is the second step of the aspartate biosynthetic pathway. ASA can either be further reduced to homoserine, which leads to methionine, threonine, or isoleucine, or it can be condensed with pyruvate and cyclized into dihydrodipicolinate, and then converted into diaminopimelate, a component of bacterial cell walls, and finally decarboxylated to produce lysine. ASADH contains an N-terminal Rossmann fold NAD(P) binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like catalytic domain and are members of the GAPDH superfamily of proteins.


Pssm-ID: 467678 [Multi-domain]  Cd Length: 165  Bit Score: 161.90  E-value: 5.26e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 132 CSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIhaiqelkeqaksilageevestilpakkdkkhyPIAFNVLPQVDI 211
Cdd:cd18128    1 CTVSLMLMALGGLFQKFLVEWVSVATYQAVSGAG*---------------------------------PIAGNLIPWIDV 47
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 212 FTDNDFTFEEVKMIQETKKILEDP--NLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAP-GVILQDNPSEQ 288
Cdd:cd18128   48 FLDNGQTKEEWKGQAETNKILGDLdsPIPISGTCVRVGVLRCHSQAFTIKLKEDAPIEEVEEAIAAHN*WIKVIPNVDRI 127
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 447213371 289 LYPMPLYAEGKIDTFVGRIRKDPDTPNGFHLWIVSDNL 326
Cdd:cd18128  128 TPRTPANVTGTLSTPVGRIRKDAMGPFDLQAFTVGDNL 165
Semialdhyde_dh pfam01118
Semialdehyde dehydrogenase, NAD binding domain; This Pfam entry contains the following members: ...
8-123 2.77e-43

Semialdehyde dehydrogenase, NAD binding domain; This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase


Pssm-ID: 426059 [Multi-domain]  Cd Length: 121  Bit Score: 145.74  E-value: 2.77e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371    8 VAVVGATGAVGQKIIELLEKEtkFNITEVTLLSSKRSAGKTVQFK------GREIIIQEAKINSFEGVDIAFFSAGGEVS 81
Cdd:pfam01118   2 VAIVGATGYVGQELLRLLEEH--PPVELVVLFASSRSAGKKLAFVhpilegGKDLVVEDVDPEDFKDVDIVFFALPGGVS 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 447213371   82 RQFVNQAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEH 123
Cdd:pfam01118  80 KEIAPKLAEAGAKVIDLSSDFRMDDDVPYGLPEVNREAIKQA 121
ASADH_N_like cd24147
N-terminal NAD(P)-binding domain of aspartate beta-semialdehyde dehydrogenase (ASADH), USG-1 ...
8-131 2.96e-37

N-terminal NAD(P)-binding domain of aspartate beta-semialdehyde dehydrogenase (ASADH), USG-1 protein and similar proteins; The family includes aspartate beta-semialdehyde dehydrogenase (ASADH), NADP-dependent malonyl-CoA reductase (MCR), and USG-1 protein. They contain an N-terminal Rossmann fold NAD(P) binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like domain and are members of the GAPDH superfamily of proteins. ASADH (EC 1.2.1.11), also called ASA dehydrogenase (ASD), or aspartate-beta-semialdehyde dehydrogenase, catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate, which is the second step of the aspartate biosynthetic pathway. ASA can either be further reduced to homoserine, which leads to methionine, threonine, or isoleucine, or it can be condensed with pyruvate and cyclized into dihydrodipicolinate, and then converted into diaminopimelate, a component of bacterial cell walls, and finally decarboxylated to produce lysine. NADP-dependent MCR (EC 1.2.1.75) is mainly found in Archaea. It catalyzes the reduction of malonyl-CoA to malonate semialdehyde, a key step in the 3-hydroxypropanoate and the 3-hydroxypropanoate/4-hydroxybutyrate cycles. It can also use succinyl-CoA and succinate semialdehyde as substrates but at a lower rate than malonyl-CoA. Sequence comparison suggests that the archaeal MCR gene (mcr) has evolved from the duplication of a common ancestral ASADH gene (asd). The biological function of USG-1 protein and homologs remains unclear. They are homologs to ASADH but lack the conserved active site residues of the ASADH protein C-terminal catalytic domain.


Pssm-ID: 467523 [Multi-domain]  Cd Length: 142  Bit Score: 130.53  E-value: 2.96e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   8 VAVVGATGAVGQKIIELLEKETkFNITEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQFVNQ 87
Cdd:cd24147    3 VGVVGATGAVGSEILQLLAEEP-DPLFELRALASEESAGKKAEFAGEAIMVQEADPIDFLGLDIVFLCAGAGVSAKFAPE 81
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 447213371  88 AVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEHKG--IIAVPN 131
Cdd:cd24147   82 AARAGVLVIDNAGALRMDPDVPLVVPEVNAEAIGLGEGtpLLVIPN 127
ASADH_USG1_N cd17894
N-terminal NAD(P)-binding domain of USG-1 protein and similar proteins; The family includes ...
6-131 4.73e-37

N-terminal NAD(P)-binding domain of USG-1 protein and similar proteins; The family includes Escherichia coli USG-1 protein, Pseudomonas aeruginosa USG-1 homolog proteins and similar proteins. Although their biological function remains unknown, they are homologs to aspartate beta-semialdehyde dehydrogenase (ASADH) which contains an N-terminal Rossmann fold NAD(P) binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like domain. However, USG-1 proteins lack the conserved active site residues of the ASADH protein C-terminal domain.


Pssm-ID: 467520 [Multi-domain]  Cd Length: 144  Bit Score: 130.05  E-value: 4.73e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   6 YHVAVVGATGAVGQKIIELLEkETKFNITEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQFV 85
Cdd:cd17894    1 YRIAVVGATGLVGKELLELLE-ERGFPVGRLRLLDSEESAGELVEFGGEPLDVQDLDEFDFSDVDLVFFAGPAEVARAYA 79
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 447213371  86 NQAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEH--KGIIAVPN 131
Cdd:cd17894   80 PRARAAGCLVIDLSGALRSDPDVPLVVPGVNPEALAAAaeRRVVAVPN 127
ASADH_C_like cd18124
C-terminal catalytic domain of aspartate beta-semialdehyde dehydrogenase (ASADH), USG-1 ...
132-326 1.49e-35

C-terminal catalytic domain of aspartate beta-semialdehyde dehydrogenase (ASADH), USG-1 protein and similar proteins; The family includes aspartate beta-semialdehyde dehydrogenase (ASADH), NADP-dependent malonyl-CoA reductase (MCR), and USG-1 protein. These proteins contain an N-terminal Rossmann fold NAD(P) binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like domain and are members of the GAPDH superfamily of proteins. ASADH (EC 1.2.1.11), also called ASA dehydrogenase (ASD), or aspartate-beta-semialdehyde dehydrogenase, catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate, which is the second step of the aspartate biosynthetic pathway. ASA can either be further reduced to homoserine, which leads to methionine, threonine, or isoleucine, or it can be condensed with pyruvate and cyclized into dihydrodipicolinate, and then converted into diaminopimelate, a component of bacterial cell walls, and finally decarboxylated to produce lysine. NADP-dependent MCR (EC 1.2.1.75) is mainly found in Archaea. It catalyzes the reduction of malonyl-CoA to malonate semialdehyde, a key step in the 3-hydroxypropanoate and the 3-hydroxypropanoate/4-hydroxybutyrate cycles. It can also use succinyl-CoA and succinate semialdehyde as substrates but at a lower rate than malonyl-CoA. Sequence comparison suggests that the archaeal MCR gene (mcr) has evolved from the duplication of a common ancestral ASADH gene (asd). The biological function of USG-1 protein and homologs remains unclear. They are homologs to ASADH but lack the conserved active site residues of the ASADH protein C-terminal catalytic domain.


Pssm-ID: 467674 [Multi-domain]  Cd Length: 193  Bit Score: 128.09  E-value: 1.49e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 132 CSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAksilaGEEVESTILPAkkDKKHYPIAFNVLPQVDI 211
Cdd:cd18124    1 CTVSLLVMALKPLFAKFLVEWVSVAT*QAVSGAGYENMRELLSQM-----GELMRAGPLPT--GVFS*AIADNLIPWIDK 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 212 FTDNDFTFEEVKMIQETKKIL--EDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLfDAPGVILQDNPSE-Q 288
Cdd:cd18124   74 VLDNGQSKEEWKIQAEANKILgtLDSPIPISVTCNRVPVLDGHSQSFTLKLKEDVPLEEVEEVL-DAHKPWVKVIPNDyA 152
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 447213371 289 LYPMPLY---AEGKIDTFVGRIRKDPDTPNGFHLWIVSDNL 326
Cdd:cd18124  153 IRPQPRLdrkVTGGLSTPVGRIRKDAMDPFDVNAFAVSDNT 193
Semialdhyde_dh smart00859
Semialdehyde dehydrogenase, NAD binding domain; The semialdehyde dehydrogenase family is found ...
7-123 6.08e-35

Semialdehyde dehydrogenase, NAD binding domain; The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.


Pssm-ID: 214863 [Multi-domain]  Cd Length: 123  Bit Score: 123.81  E-value: 6.08e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371     7 HVAVVGATGAVGQKIIELLEKETKFNITEvtLLSSKRSAGKTVQFKG---REIIIQEAKINSFE--GVDIAFFSAGGEVS 81
Cdd:smart00859   1 KVAIVGATGYVGQELLRLLAEHPDFELTA--LAASSRSAGKKVSEAGphlKGEVVLELDPPDFEelAVDIVFLALPHGVS 78
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 447213371    82 RQFVNQ---AVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEH 123
Cdd:smart00859  79 KESAPLlprAAAAGAVVIDLSSAFRMDDDVPYGLPEVNPEAIKKA 123
ASADH_AGPR_N cd02281
N-terminal NAD(P)-binding domain of aspartate-beta-semialdehyde dehydrogenase (ASADH) and ...
6-131 3.74e-33

N-terminal NAD(P)-binding domain of aspartate-beta-semialdehyde dehydrogenase (ASADH) and N-acetyl-gamma-glutamyl-phosphate reductase (AGPR); Aspartate-beta-semialdehyde dehydrogenase (ASADH, EC 1.2.1.11), also called ASA dehydrogenase (ASD), or aspartate-beta-semialdehyde dehydrogenase, catalyzes the second step of the aspartate biosynthetic pathway, an essential enzyme found in bacteria, fungi, and higher plants. ASADH catalyses the formation of L-aspartate-beta-semialdehyde (ASA) by the reductive dephosphorylation of L-beta-aspartyl phosphate (BAP), utilizing the reducing power of NADPH. ASA can either be further reduced to homoserine, which leads to methionine, threonine, or isoleucine, or it can be condensed with pyruvate and cyclized into dihydrodipicolinate, and then converted into diaminopimelate, a component of bacterial cell walls, and finally decarboxylated to produce lysine. N-acetyl-gamma-glutamyl-phosphate reductase (AGPR, EC 1.2.1.38), also called N-acetyl-glutamate semialdehyde dehydrogenase, or NAGSA dehydrogenase, reversibly catalyses the NADPH-dependent reduction of N-acetyl-gamma-glutamyl phosphate; the third step of arginine biosynthesis. ASADH and AGPR proteins contain an N-terminal Rossmann fold NAD(P)H binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like domain.


Pssm-ID: 467516 [Multi-domain]  Cd Length: 145  Bit Score: 120.16  E-value: 3.74e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   6 YHVAVVGATGAVGQKIIELLEKETkFNITEVTLLSSKRSAGKTVQFKG--REIIIQEA-KINSFEGVDIAFFSAGGEVSR 82
Cdd:cd02281    1 KKVGVVGATGYVGGEFLRLLLEHP-FPLFEIVLLAASSAGAKKKYFHPklWGRVLVEFtPEEVLEQVDIVFTALPGGVSA 79
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 447213371  83 QFVNQAVSSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKEHKG--IIAVPN 131
Cdd:cd02281   80 KLAPELSEAGVLVIDNASDFRLDKDVPLVVPEVNREHIGELKGtkIIANPN 130
ASADH_C_arch_fung_like cd18130
C-terminal catalytic domain of fungal/archaeal aspartate beta-semialdehyde dehydrogenase ...
132-326 1.57e-30

C-terminal catalytic domain of fungal/archaeal aspartate beta-semialdehyde dehydrogenase (ASADH) and similar proteins; The family corresponds to a new branch of aspartate beta-semialdehyde dehydrogenase (ASADH) enzymes that has a similar overall fold and domain organization but share very little sequence homology with the typical bacterial ASADHs. They are mainly from archaea and fungi. ASADH (EC 1.2.1.11), also called ASA dehydrogenase (ASD), or aspartate-beta-semialdehyde dehydrogenase, catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate, which is the second step of the aspartate biosynthetic pathway. ASA can either be further reduced to homoserine, which leads to methionine, threonine, or isoleucine, or it can be condensed with pyruvate and cyclized into dihydrodipicolinate, and then converted into diaminopimelate, a component of bacterial cell walls, and finally decarboxylated to produce lysine. ASADH contains an N-terminal Rossmann fold NAD(P) binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like catalytic domain and are members of the GAPDH superfamily of proteins. This family also includes NADP-dependent malonyl-CoA reductase (MCR, EC 1.2.1.75), which catalyzes the reduction of malonyl-CoA to malonate semialdehyde, a key step in the 3-hydroxypropanoate and the 3-hydroxypropanoate/4-hydroxybutyrate cycles. It can also use succinyl-CoA and succinate semialdehyde as substrates but at a lower rate than malonyl-CoA.


Pssm-ID: 467680 [Multi-domain]  Cd Length: 180  Bit Score: 114.25  E-value: 1.57e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 132 CSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGihaiqelkeqaksilageevestilpakkdkkhypiaFNVLPQVDI 211
Cdd:cd18130    1 CSTAGLALPLKPLHDFFGIEAVIVTTMQAISGAG-------------------------------------YPGVPSLDI 43
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 212 FtDNDFTF---EEVKMIQETKKIL--------EDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVL------- 273
Cdd:cd18130   44 L-DNVIPYiggEEEKIESETKKILgtlnedkiEPADFKVSATCNRVPVIDGHTESVSVKFKERPDPEEVKEALenyepep 122
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 274 -------FDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPdtPNGFHLWIVSDNL 326
Cdd:cd18130  123 qvlgppsAPKPIIVVEDEPRRPQPRLDRDAGDGMAVTVGRIRKDD--DFDLKFVLLSHNT 180
ScASADH_like_N cd02315
N-terminal NAD(P)-binding domain of Saccharomyces cerevisiae aspartate beta-semialdehyde ...
8-132 7.91e-25

N-terminal NAD(P)-binding domain of Saccharomyces cerevisiae aspartate beta-semialdehyde dehydrogenase (ASADH) and similar proteins; The family corresponds to a new branch of ASADH enzymes that has a similar overall fold and domain organization but sharing very little sequence homology with the typical bacterial ASADHs. They are mainly from archaea and fungi. ASADH (EC 1.2.1.11), also called ASA dehydrogenase (ASD), or aspartate-beta-semialdehyde dehydrogenase, catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate, which is the second step of the aspartate biosynthetic pathway. ASA can either be further reduced to homoserine, which leads to methionine, threonine, or isoleucine, or it can be condensed with pyruvate and cyclized into dihydrodipicolinate, and then converted into diaminopimelate, a component of bacterial cell walls, and finally decarboxylated to produce lysine. ASADH contains an N-terminal Rossmann fold NAD(P) binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like catalytic domain. Family also includes NADP-dependent malonyl-CoA reductase (MCR, EC 1.2.1.75), which catalyzes the reduction of malonyl-CoA to malonate semialdehyde, a key step in the 3-hydroxypropanoate and the 3-hydroxypropanoate/4-hydroxybutyrate cycles. It can also use succinyl-CoA and succinate semialdehyde as substrates but at a lower rate than malonyl-CoA.


Pssm-ID: 467518  Cd Length: 162  Bit Score: 98.33  E-value: 7.91e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   8 VAVVGATGAVGQKIIELLEKETKFNITEVTllSSKRSAGKT----VQFKG--------REIIIQEAKINSFEGVDIAFfS 75
Cdd:cd02315    3 VGVLGATGMVGQRFIQLLANHPWFELAALG--ASERSAGKKygdaVRWKQdtpipeevADMVVKECEPEEFKDCDIVF-S 79
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 447213371  76 A-----GGEVSRQFVNqavsSGAIVIDNTSKYRMAHDVPLVVPEVNAHTLK--EH-------KG-IIAVPNC 132
Cdd:cd02315   80 AldsdvAGEIEPAFAK----AGIPVFSNASNHRMDPDVPLVIPEVNPDHLDliEAqrkrrgwKGfIVTNPNN 147
PRK06598 PRK06598
aspartate-semialdehyde dehydrogenase; Reviewed
8-331 7.74e-21

aspartate-semialdehyde dehydrogenase; Reviewed


Pssm-ID: 235839  Cd Length: 369  Bit Score: 92.20  E-value: 7.74e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   8 VAVVGATGAVGQKIIELLEKETKFNITEVTLLSSKRSAGKTVQFKGREIIIQEAK-INSFEGVDIAFFSAGGEVSRQFVN 86
Cdd:PRK06598   4 VGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFdIDALKKLDIIITCQGGDYTNEVYP 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  87 QAVSSG--AIVIDNTSKYRMAHDVPLVVPEVNAHTLKE--HKGI---IAvPNCSALQMVTALQpirkvfGL------ERI 153
Cdd:PRK06598  84 KLRAAGwqGYWIDAASTLRMKDDAIIILDPVNRDVIDDalANGVktfVG-GNCTVSLMLMALG------GLfkndlvEWV 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 154 IVSTYQAVSGSGIHAIQELKEQ---------------AKSILAGE-EVESTILPAKKDKKHY--PIAFNVLPQVDIFTDN 215
Cdd:PRK06598 157 SVMTYQAASGAGARNMRELLTQmgalhgavadeladpASAILDIDrKVTELMRSGDLPTDNFgvPLAGSLIPWIDKDLGN 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 216 DFTFEEVKMIQETKKIL--EDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEvlfdapgVILQDNPSEQLYP-- 291
Cdd:PRK06598 237 GQSREEWKGQAETNKILglTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLAEIEE-------ILAAHNPWVKVVPnd 309
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 447213371 292 --------MPLYAEGKIDTFVGRIRKDPDTPNGFHLWIVSDNLLKGAA 331
Cdd:PRK06598 310 reatmrelTPAAVTGTLTIPVGRLRKLNMGPEYLSAFTVGDQLLWGAA 357
ASADH_C_bac_like cd23938
C-terminal catalytic domain of bacterial aspartate beta-semialdehyde dehydrogenase (ASADH) and ...
132-309 1.01e-16

C-terminal catalytic domain of bacterial aspartate beta-semialdehyde dehydrogenase (ASADH) and similar proteins; The family corresponds to a branch of bacterial aspartate beta-semialdehyde dehydrogenase (ASADH) enzymes mainly found in proteobacteria, such as Escherichia coli, Haemophilus influenzae, Pseudomonas aeruginosa and Vibrio cholerae. These proteins have similar overall folds and domain organizations but share less sequence homology with fungal and archaeal ASADHs. ASADH (EC 1.2.1.11), also called ASA dehydrogenase (ASD), or aspartate-beta-semialdehyde dehydrogenase, catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate, which is the second step of the aspartate biosynthetic pathway. ASA can either be further reduced to homoserine, which leads to methionine, threonine, or isoleucine, or it can be condensed with pyruvate and cyclized into dihydrodipicolinate, and then converted into diaminopimelate, a component of bacterial cell walls, and finally decarboxylated to produce lysine. ASADH contains an N-terminal Rossmann fold NAD(P) binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like catalytic domain and are members of the GAPDH superfamily of proteins.


Pssm-ID: 467687  Cd Length: 217  Bit Score: 77.73  E-value: 1.01e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 132 CSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQ---------------AKSILAGEE-VESTILPAKKD 195
Cdd:cd23938    1 CTVSLMLMALGGLFKNDLVEWISSMTYQAASGAGAKNMRELLSQmgalgdavsdeladpASAILDIDRkVTELQRSGSFP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 196 KKHY--PIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILE-DPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEv 272
Cdd:cd23938   81 TDNFgvPLAGSLIPWIDKQLENGQSKEEWKGQVETNKILGtSKPIPIDGLCVRVGAMRCHSQALTIKLKKDVPLDEIEE- 159
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 447213371 273 lfdapgVILQDNPSEQLYP----------MPLYAEGKIDTFVGRIRK 309
Cdd:cd23938  160 ------IIAAHNQWVKVVPndkeatlrelTPAAVTGTLTVPVGRLRK 200
GAPDH_like_C cd18122
C-terminal catalytic domain found in glyceraldehyde-3-phosphate dehydrogenase (GAPDH) ...
132-326 1.60e-14

C-terminal catalytic domain found in glyceraldehyde-3-phosphate dehydrogenase (GAPDH) superfamily of proteins; GAPDH-like C-terminal catalytic domains are typically associated with a classic N-terminal Rossmann fold NAD(P)-binding domain. This superfamily includes the C-terminal domains of glyceraldehyde-3-phosphate dehydrogenase (GAPDH), N-acetyl-gamma-glutamyl-phosphate reductase (AGPR), aspartate beta-semialdehyde dehydrogenase (ASADH), acetaldehyde dehydrogenase (ALDH) and USG-1 homolog proteins.


Pssm-ID: 467672 [Multi-domain]  Cd Length: 166  Bit Score: 70.63  E-value: 1.60e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 132 CSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGihaiqelKEQAKSILAGEEVESTILPAKKDKKHYPiafnvlpqvdi 211
Cdd:cd18122    1 CTTTGLIPAAKALNDKFGIEEILVVTVQAVSGAG-------PKTKGPILKSEVRAIIPNIPKNETKHAP----------- 62
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 212 ftdndftfeevkmiqETKKILE--DPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVI--LQDNPSE 287
Cdd:cd18122   63 ---------------ETGKVLGeiGKPIKVDGIAVRVPATLGHLVTVTVKLEKTATLEQIAEAVAEAVEEVqiSAEDGLT 127
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 447213371 288 QLYPMPLYAEGKIDTFVGRIRKDPDTPNGFHLWIVSDNL 326
Cdd:cd18122  128 YAKVSTRSVGGVYGVPVGRQREFAFDDNKLKVFSAVDNE 166
ArgC COG0002
N-acetyl-gamma-glutamylphosphate reductase [Amino acid transport and metabolism]; ...
6-336 1.39e-09

N-acetyl-gamma-glutamylphosphate reductase [Amino acid transport and metabolism]; N-acetyl-gamma-glutamylphosphate reductase is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 439773 [Multi-domain]  Cd Length: 345  Bit Score: 58.54  E-value: 1.39e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   6 YHVAVVGATGAVGQKIIELLEKETKFNITEVTllsSKRSAGKTV-----QFKGR-EIIIQEAKINS-FEGVDIAFFSAGG 78
Cdd:COG0002    1 IKVGIVGASGYTGGELLRLLLRHPEVEIVALT---SRSNAGKPVsevhpHLRGLtDLVFEPPDPDElAAGCDVVFLALPH 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  79 EVSRQFVNQAVSSGAIVID--------NTSKYR----MAHDVPLVV-------PEVNAHTLKEHKgIIAVPNC--SALQM 137
Cdd:COG0002   78 GVSMELAPELLEAGVKVIDlsadfrlkDPAVYEkwygFEHAAPELLgeavyglPELNREEIKGAR-LIANPGCypTAVLL 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 138 vtALQPI--RKVFGLERIIVStyqAVSG-SGihaiqelkeqaksilAGeevestilpAK-KDKKHYP------IAFNV-- 205
Cdd:COG0002  157 --ALAPLlkAGLIDPDDIIID---AKSGvSG---------------AG---------RKaSEGTHFSevnenfRAYKVgg 207
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 206 ---LPQVDiftdndftfEEVKMIQEtkkilEDPNLKMaaTCVRVPVISG-HSeSVYIELEKEATVAEIKEVLFDApgvil 281
Cdd:COG0002  208 hrhTPEIE---------QELSRLAG-----EDVKVSF--TPHLVPMVRGiLA-TIYARLKDGVTEEDLRAAYEEF----- 265
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447213371 282 qdnpseqlypmplYAEgkiDTFVgRIRKDPDTPN------------GFH-------LWIVS--DNLLKGAAWNSVQ 336
Cdd:COG0002  266 -------------YAD---EPFV-RVLPEGRLPEtksvrgsnfcdiGVAvdertgrLVVVSaiDNLVKGAAGQAVQ 324
ASADH_MCR_N cd24150
N-terminal NAD(P)-binding domain of archaeal NADP-dependent malonyl-CoA reductase (MCR) and ...
9-120 7.29e-09

N-terminal NAD(P)-binding domain of archaeal NADP-dependent malonyl-CoA reductase (MCR) and similar proteins; Archaeal NADP-dependent MCR (EC 1.2.1.75) catalyzes the reduction of malonyl-CoA to malonate semialdehyde, a key step in the 3-hydroxypropanoate and the 3-hydroxypropanoate/4-hydroxybutyrate cycles. It can also use succinyl-CoA and succinate semialdehyde as substrates but at a lower rate than malonyl-CoA. Sequence comparison suggests that the archaeal malonyl-CoA reductase gene (mcr) has evolved from the duplication of a common ancestral aspartate beta-semialdehyde dehydrogenase (ASADH) gene (asd). MCR contains an N-terminal Rossmann fold NAD(P) binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like catalytic domain.


Pssm-ID: 467526  Cd Length: 163  Bit Score: 54.26  E-value: 7.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   9 AVVGATGAVGQKIIELLEKETKFnitEVTLLSSKRSAGK---------TVQFKGREIIIQEAKINS---FEGVDIAFF-- 74
Cdd:cd24150    5 AILGATGLVGIEYVRMLSNHPYI---KPAYLAGKGSVGKpygevvrwqTVGQVPKEIADMEIKPTDpklMDDVDIIFSpl 81
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 447213371  75 --SAGGEVSRQFVNQavssGAIVIDNTSKYRMAHDVPLVVPEVNAHTL 120
Cdd:cd24150   82 pqGAAGPVEEQFAKE----GFPVISNSPDHRFDPDVPLLVPELNPHTI 125
AGPR_1_N cd17895
N-terminal NAD(P)-binding domain of N-acetyl-gamma-glutamyl-phosphate reductase (AGPR), type 1 ...
8-131 1.26e-08

N-terminal NAD(P)-binding domain of N-acetyl-gamma-glutamyl-phosphate reductase (AGPR), type 1 and similar proteins; AGPR (EC 1.2.1.38), also called N-acetyl-glutamate semialdehyde dehydrogenase, or NAGSA dehydrogenase, catalyzes the NADPH-dependent reduction of N-acetyl-gamma-glutamyl-phosphate phosphate; the third step of arginine biosynthesis. N-acetyl-gamma-glutamyl-phosphate phosphate, the product of the second step catalyzed by acetylglutamate kinase, undergoes reductive dephosphorylation to give N-acetylglutamic semialdehyde, which is converted to ornithine by acetylornithine aminotransferase and acetylornithine deacetylase. AGPR proteins contain an N-terminal Rossmann fold NAD(P)-binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like catalytic domain and are members of the GAPDH superfamily of proteins. NADP(+) binds in a cleft between these domains and contacts both. There are two related families of N-acetyl-gamma-glutamyl-phosphate reductase, which differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. The model corresponds to type 1 AGPR family. Bacterial members of this family tend to be found within Arg biosynthesis operons. The type 1 AGPR family also includes LysY (LysW-L-2-aminoadipate/LysW-L-glutamate phosphate reductase), which is involved in both the arginine and lysine biosynthetic pathways.


Pssm-ID: 467521 [Multi-domain]  Cd Length: 170  Bit Score: 53.59  E-value: 1.26e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   8 VAVVGATGAVGQKIIELLEKETKFnitEVTLLSSKRSAGKTV-----QFKGREIIIQEAKINS--FEGVDIAFFSAGGEV 80
Cdd:cd17895    3 VGIIGASGYTGAELLRLLLNHPEV---EIVALTSRSYAGKPVsevfpHLRGLTDLTFEPDDDEeiAEDADVVFLALPHGV 79
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  81 SRQFVNQAVSSGAIVID--------NTSKYR----MAHDVPLVV-------PEVNAHTLKEHKgIIAVPN 131
Cdd:cd17895   80 SMELAPKLLEAGVKVIDlsadfrlkDPETYEkwygFEHAAPELLkeavyglPELNREEIKKAR-LVANPN 148
PRK06901 PRK06901
oxidoreductase;
19-345 8.66e-08

oxidoreductase;


Pssm-ID: 235883 [Multi-domain]  Cd Length: 322  Bit Score: 53.20  E-value: 8.66e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  19 QKIIELLEkETKFNITEVTLLS--------SKRSAGKTVQfkgrEIIIQEAKINSFEGVdiaFFsAGGEVSRQFVNQAVS 90
Cdd:PRK06901  16 EKLLEALE-QSDLEIEQISIVEiepfgeeqGIRFNNKAVE----QIAPEEVEWADFNYV---FF-AGKMAQAEHLAQAAE 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  91 SGAIVIDNTSKYRMAHDVPLVVPEVNAHTLKE--HKGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHA 168
Cdd:PRK06901  87 AGCIVIDLYGICAALANVPVVVPSVNDEQLAElrQRNIVSLPDPQVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAET 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 169 IQELKEQAKSILAGeevestiLPAKKDKKHypIAFNVLPQvdiftdNDFTFEevkmiQETKKILedPNLKMAA-TCVRVP 247
Cdd:PRK06901 167 VKKLAGQTARLLNG-------IPLDEEEQR--LAFDVFPA------NAQNLE-----LQLQKIF--PQLENVTfHSIQVP 224
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371 248 VISGHSESVYI----ELEKEATVAEIKE---VLFDAPGVILQDNPSEQlypmpLYAEGKIDTFVGRIRKdpdTPNGFHLW 320
Cdd:PRK06901 225 VFYGLAQMVTAlseyELDIESQLAEWQQnnlLRYHEEKLITPVLNGEN-----ENGEESVKLHISQLSA---VENGVQFW 296
                        330       340
                 ....*....|....*....|....*
gi 447213371 321 IVSDNLLKGAAWNSVQIAETMVEEG 345
Cdd:PRK06901 297 SVADEQRFNLAFLAVKLLELIYQQG 321
AGPR_N cd02280
N-terminal NAD(P)-binding domain of N-acetyl-gamma-glutamyl-phosphate reductase (AGPR) and ...
8-104 1.01e-06

N-terminal NAD(P)-binding domain of N-acetyl-gamma-glutamyl-phosphate reductase (AGPR) and similar proteins; AGPR (EC 1.2.1.38), also called N-acetyl-glutamate semialdehyde dehydrogenase, or NAGSA dehydrogenase, catalyzes the third step in the biosynthesis of arginine from glutamate, the NADPH-dependent reduction of N-acetyl-5-glutamyl phosphate into N-acetylglutamate 5-semialdehyde. In bacteria it is a monofunctional protein of 35 to 38kDa (gene argC), while in fungi it is part of a bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) which contains a N-terminal acetylglutamate kinase (EC 2.7.2.8) domain and a C-terminal AGPR domain. There are two related families (type 1 and type 2) of N-acetyl-gamma-glutamyl-phosphate reductase, which differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. This family also includes LysY (LysW-L-2-aminoadipate/LysW-L-glutamate phosphate reductase, EC 1.2.1.103/EC 1.2.1.106), which is involved in both the arginine and lysine biosynthetic pathways. Members in this family contain an N-terminal Rossmann fold NAD(P)-binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like domain.


Pssm-ID: 467515 [Multi-domain]  Cd Length: 160  Bit Score: 47.95  E-value: 1.01e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   8 VAVVGATGAVGQKIIELLEKETKFnitEVTLLSSKRSAGKTVQF-----KGREIIIQEAKINSFEGVDIAFFSAGGEVSR 82
Cdd:cd02280    3 VAIIGASGYTGLEIVRLLLGHPYL---RVLTLSSRERAGPKLREyhpslIISLQIQEFRPCEVLNSADILVLALPHGASA 79
                         90       100
                 ....*....|....*....|..
gi 447213371  83 QFVNQAVSSGAIVIDNTSKYRM 104
Cdd:cd02280   80 ELVAAISNPQVKIIDLSADFRF 101
GAPDH_C cd18123
C-terminal catalytic domain of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and similar ...
229-277 6.56e-04

C-terminal catalytic domain of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and similar proteins; Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis by reversibly catalyzing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. It has been implicated in varied activities including regulating mRNA stability, the regulation of gene expression, induction of apoptosis, intracellular membrane trafficking, iron uptake and transport (via secreted GAPDH), heme metabolism, the maintenance of genomic integrity, and nuclear tRNA export. GAPDH proteins contains an N-terminal NAD(P)-binding domain and a C-terminal catalytic domain. The primarily N-terminal NAD(P)-binding domain contains a Rossmann fold which combines with the catalytic cysteine-containing C-terminus to form a catalytic cleft. Phosphatidyl-serine, RNA, and glutathione binding sites have been identified in the N-terminus. Different forms of GAPDH exist which utilize NAD (1.2.1.12), NADP (1.2.1.13) or either (1.2.1.59). GADPH family members include the ubiquitous NAD+ or NADP+ utilizing type I, type II NADP+ utilizing mainly from archaea, and a small clade of dehydrogenases, called erythrose-4-phosphate dehydrogenase (E4PDH) proteins, which utilize NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose.


Pssm-ID: 467673  Cd Length: 164  Bit Score: 39.91  E-value: 6.56e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 447213371 229 KKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAP 277
Cdd:cd18123   67 GKVLPELNGKLTGMAVRVPTTLMSVHDLMVELEKDVTYDDIKEAVKQAP 115
SDR_a5 cd05243
atypical (a) SDRs, subgroup 5; This subgroup contains atypical SDRs, some of which are ...
8-78 8.97e-04

atypical (a) SDRs, subgroup 5; This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.


Pssm-ID: 187554 [Multi-domain]  Cd Length: 203  Bit Score: 39.91  E-value: 8.97e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447213371   8 VAVVGATGAVGQKIIELLeKETKFnitEVTLLSSKRSAGKTVQFKGREIII-----QEAKINSFEGVDIAFFSAGG 78
Cdd:cd05243    2 VLVVGATGKVGRHVVREL-LDRGY---QVRALVRDPSQAEKLEAAGAEVVVgdltdAESLAAALEGIDAVISAAGS 73
PCBER_SDR_a cd05259
phenylcoumaran benzylic ether reductase (PCBER) like, atypical (a) SDRs; PCBER and ...
7-71 1.60e-03

phenylcoumaran benzylic ether reductase (PCBER) like, atypical (a) SDRs; PCBER and pinoresinol-lariciresinol reductases are NADPH-dependent aromatic alcohol reductases, and are atypical members of the SDR family. Other proteins in this subgroup are identified as eugenol synthase. These proteins contain an N-terminus characteristic of NAD(P)-binding proteins and a small C-terminal domain presumed to be involved in substrate binding, but they do not have the conserved active site Tyr residue typically found in SDRs. Numerous other members have unknown functions. The glycine rich NADP-binding motif in this subgroup is of 2 forms: GXGXXG and G[GA]XGXXG; it tends to be atypical compared with the forms generally seen in classical or extended SDRs. The usual SDR active site tetrad is not present, but a critical active site Lys at the usual SDR position has been identified in various members, though other charged and polar residues are found at this position in this subgroup. Atypical SDR-related proteins retain the Rossmann fold of the SDRs, but have limited sequence identity and generally lack the catalytic properties of the archetypical members. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.


Pssm-ID: 187569 [Multi-domain]  Cd Length: 282  Bit Score: 39.59  E-value: 1.60e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 447213371   7 HVAVVGATGAVGQKIIELLEKETKFNITEVTLLSSKrsagKTVQFKGREIIIQEAKINS-------FEGVDI 71
Cdd:cd05259    1 KIAIAGATGTLGGPIVSALLASPGFTVTVLTRPSST----SSNEFQPSGVKVVPVDYASheslvaaLKGVDA 68
Gp_dh_C pfam02800
Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; GAPDH is a tetrameric NAD-binding ...
229-277 1.68e-03

Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold.


Pssm-ID: 460700  Cd Length: 158  Bit Score: 38.73  E-value: 1.68e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 447213371  229 KKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAP 277
Cdd:pfam02800  62 GLVLPELKGKLDGMAVRVPTPNVSVVDLVVELEKPVTVEEVNAALKEAA 110
PRK07424 PRK07424
bifunctional sterol desaturase/short chain dehydrogenase; Validated
1-88 2.91e-03

bifunctional sterol desaturase/short chain dehydrogenase; Validated


Pssm-ID: 236016 [Multi-domain]  Cd Length: 406  Bit Score: 39.29  E-value: 2.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   1 MSEKGYHVAVVGATGAVGQKIIelleKETKFNITEVTLLSSKrSAGKTVQFKGREI--------IIQEAKI-NSFEGVDI 71
Cdd:PRK07424 174 LSLKGKTVAVTGASGTLGQALL----KELHQQGAKVVALTSN-SDKITLEINGEDLpvktlhwqVGQEAALaELLEKVDI 248
                         90       100
                 ....*....|....*....|.
gi 447213371  72 AFFSAG----GEVSRQFVNQA 88
Cdd:PRK07424 249 LIINHGinvhGERTPEAINKS 269
PLN02968 PLN02968
Probable N-acetyl-gamma-glutamyl-phosphate reductase
2-165 3.06e-03

Probable N-acetyl-gamma-glutamyl-phosphate reductase


Pssm-ID: 215522 [Multi-domain]  Cd Length: 381  Bit Score: 39.04  E-value: 3.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   2 SEKGYHVAVVGATGAVGQKIIELLEKETKFnitEVTLLSSKRSAGKTVQFKGREIIIQ------EAKINSFEGVDIAFFS 75
Cdd:PLN02968  35 SEEKKRIFVLGASGYTGAEVRRLLANHPDF---EITVMTADRKAGQSFGSVFPHLITQdlpnlvAVKDADFSDVDAVFCC 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371  76 AGGEVSRQFVnQAVSSGAIVIDNTSKYRMA------------HDVPLV-------VPEVNAHTLKEHKgIIAVPNCSALQ 136
Cdd:PLN02968 112 LPHGTTQEII-KALPKDLKIVDLSADFRLRdiaeyeewyghpHRAPELqkeavygLTELQREEIKSAR-LVANPGCYPTG 189
                        170       180       190
                 ....*....|....*....|....*....|.
gi 447213371 137 MVTALQPIRK--VFGLERIIVSTYQAVSGSG 165
Cdd:PLN02968 190 IQLPLVPLVKagLIEPDNIIIDAKSGVSGAG 220
AGPR_N_ARG5_6_like cd24149
N-terminal NAD(P)-binding domain (AGPR region) of fungal bifunctional mitochondrial enzyme ...
8-103 3.46e-03

N-terminal NAD(P)-binding domain (AGPR region) of fungal bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) and similar proteins; The family includes bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) from fungi, which contains a N-terminal acetylglutamate kinase ( EC 2.7.2.8, also known as N-acetyl-L-glutamate 5-phosphotransferase/NAG kinase/AGK) domain and a C-terminal N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38, also known as AGPR/N-acetyl-glutamate semialdehyde dehydrogenase/NAGSA dehydrogenase) domain. The model corresponds to the AGPR N-terminal NAD(P)-binding domain. AGPR catalyzes the third step in the biosynthesis of arginine from glutamate, the NADP-dependent reduction of N-acetyl-5-glutamyl phosphate into N-acetylglutamate 5-semialdehyde. The budding yeast member, Arg5,6, is expressed as a precursor that is then maturated in the mitochondria into acetylglutamate kinase and acetylglutamyl-phosphate reductase. It is involved in the arginine biosynthesis pathway, catalyzing the second and third steps in the pathway.


Pssm-ID: 467525 [Multi-domain]  Cd Length: 154  Bit Score: 37.48  E-value: 3.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   8 VAVVGATGAVGQKIIELLEKETKFNITEVtllSSKRSAGKTVQ--FKGREI-----IIQEAKINSFEGVDIAFFSAGGEV 80
Cdd:cd24149    3 VGLIGARGYVGRELIRLLNRHPNLELAHV---SSRELAGQKVSgyTKSPIDylnlsVEDIPEEVAAREVDAWVLALPNGV 79
                         90       100
                 ....*....|....*....|....*
gi 447213371  81 SRQFVN--QAVSSGAIVIDNTSKYR 103
Cdd:cd24149   80 AKPFVDaiDKANPKSVIVDLSADYR 104
AGPR_1_N_LysY cd24151
N-terminal NAD(P)-binding domain of [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate ...
6-104 3.93e-03

N-terminal NAD(P)-binding domain of [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate reductase (LysY) and similar proteins; LysY (EC 1.2.1.103/EC 1.2.1.106) is involved in both the arginine and lysine biosynthetic pathways. LysY interacts with LysW. It may form a ternary complex with LysW and LysZ. Several bacteria and archaea utilize the amino group-carrier protein, LysW, for lysine biosynthesis from alpha-aminoadipate (AAA). In some cases, such as Sulfolobus, LysW is also used to protect the amino group of glutamate in arginine biosynthesis. After LysW modification, AAA and glutamate are converted to lysine and ornithine, respectively, by a single set of enzymes with dual functions. LysY is the third enzyme in lysine biosynthesis from AAA. LysY shows high sequence identity and functional similarities with ArgC, and they are considered to have evolved from a common ancestor. Members in this subfamily belong to the type 1 AGPR family. They contain an N-terminal Rossmann fold NAD(P)-binding domain and a C-terminal glyceraldehyde-3-phosphate dehydrogenase (GAPDH)-like domain.


Pssm-ID: 467527 [Multi-domain]  Cd Length: 170  Bit Score: 37.64  E-value: 3.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   6 YHVAVVGATGAVGQKIIELLEKETKFNITEVTllsSKRSAGKTVQF-----KGREiIIQEAKINSFEGVDIAFFSAGGEV 80
Cdd:cd24151    1 ITVSIVGASGYTGGELLRLLLGHPEVEVKQVT---SESLAGKPVHRvhpnlRGRT-LLKFVPPEELESCDVLFLALPHGE 76
                         90       100
                 ....*....|....*....|....
gi 447213371  81 SRQFVNQAVSSGAIVIDNTSKYRM 104
Cdd:cd24151   77 SMKRIDRFAELAPRIIDLSADFRL 100
TMR_SDR_a cd05269
triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs; TMR is an ...
9-92 4.70e-03

triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs; TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.


Pssm-ID: 187578 [Multi-domain]  Cd Length: 272  Bit Score: 38.41  E-value: 4.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447213371   9 AVVGATGAVGQKIIELLEKetkfNITEVTLLSSKRSAGKTVQFKGREIII-----QEAKINSFEGVDIAFFSAGGEVSRQ 83
Cdd:cd05269    2 LVTGATGKLGTAVVELLLA----KVASVVALVRNPEKAKAFAADGVEVRQgdyddPETLERAFEGVDRLLLISPSDLEDR 77
                         90
                 ....*....|....*
gi 447213371  84 ------FVNQAVSSG 92
Cdd:cd05269   78 iqqhknFIDAAKQAG 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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