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Conserved domains on  [gi|447214518|ref|WP_001291774|]
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MULTISPECIES: glycine--tRNA ligase subunit beta [Enterobacteriaceae]

Protein Classification

glycine--tRNA ligase subunit beta( domain architecture ID 11488683)

glycine--tRNA ligase beta subunit is a class-II aminoacyl-tRNA synthetase that catalyzes the conversion from ATP, glycine, and tRNA(Gly) to AMP, diphosphate, and glycyl-tRNA(Gly)

EC:  6.1.1.14
Gene Symbol:  glyS

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
glyS TIGR00211
glycyl-tRNA synthetase, tetrameric type, beta subunit; The glycyl-tRNA synthetases differ even ...
1-689 0e+00

glycyl-tRNA synthetase, tetrameric type, beta subunit; The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model. [Protein synthesis, tRNA aminoacylation]


:

Pssm-ID: 272962 [Multi-domain]  Cd Length: 691  Bit Score: 1133.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518    1 MSEKTFLVEIGTEELPPKALRSLAESFAANFTAELDNAGLAHGTVQWFAAPRRLALKVANLAEAQPDREIEKRGPAIAQA 80
Cdd:TIGR00211   1 MSSQTFLVEIGTEELPAKALRSLATQFADKLTAELNKAGLEHGNVEIFATPRRLAVLVKDLAELQPDRKEEKKGPAVKIA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518   81 FDAEGKPSKAAEGWARGCGITVDQAERLTTDKGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRP 160
Cdd:TIGR00211  81 FDADGKPTKAALGFAKGQGINVEDAEIFQTDKGEWLFVRKIHEGQPTKDLLPPLVLEFLAKLPFPKSMRWGNVDVRFIRP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  161 VHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERGkVIADYEERKAKIKADAEEAARKIGGN 240
Cdd:TIGR00211 161 IHWIVVLLGDDVIPIEILNVKSDRTTRGHRFLGEDEVSIESPDAYPEQLKENH-VIADPKERKAMILQQIETLAAKLGGI 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  241 ADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEALVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNE 320
Cdd:TIGR00211 240 ADIDEDLLDEVVSLVEYPTALLGKFEEEFLSLPAEVLVTTMKEHQRYFPVYDKDGKLLPHFITVSNGNSKDPQKIILGNE 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  321 KVVRPRLADAEFFFNTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGADVN---HATRAGLLSKCDL 397
Cdd:TIGR00211 320 KVLRARLSDAEFFYKTDLKKPLDDNLPRLETVVFQQELGTLKDKVDRISIIAGYIAQQLGADENmleHVKRAALLSKADL 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  398 MTNMVFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVACALAIADKMDTLAGIFGIGQHPKGDKDP 477
Cdd:TIGR00211 400 VTNMVYEFPELQGIMGEKYARHDGEDEAVAVAVNEQYLPRSAGDDLPSSLVGSVVAMADKLDTLASIFGIGQIPTGSKDP 479
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  478 FALRRAALGVLRIIVEKNLNLDLQTLTEEAVRLYGDKLTNANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLARRPTRP 557
Cdd:TIGR00211 480 FALRRAALGVLRIIVEKNLEIDLEELLTNFVLLQGDKLTNSNVLEDLEDFFLQRFRALLQDEGIDVDVIQAVLARRETDP 559
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  558 ADFDARMKAVSHFRTLEAAAALAAANKRVSNILAKSDEVLSDRVNASTLKEPEEIKLAMQVVVLRDKLEPYFAEGRYQDA 637
Cdd:TIGR00211 560 ADFDARAQALSHFRDLPKAEALAAANKRVANILKKGNPVLSSEIQANLFKEPKEKALFEAVLAIKMNAQESFESGDYETA 639
                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|..
gi 447214518  638 LVELAELREPVDAFFDKVMVMVDDKELRLNRLTMLEKLRELFLRVADISLLQ 689
Cdd:TIGR00211 640 LEALAELRAPVDEFFDSVMVMADDIELRQNRLNFLWGLRQLFLEVADISALQ 691
 
Name Accession Description Interval E-value
glyS TIGR00211
glycyl-tRNA synthetase, tetrameric type, beta subunit; The glycyl-tRNA synthetases differ even ...
1-689 0e+00

glycyl-tRNA synthetase, tetrameric type, beta subunit; The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 272962 [Multi-domain]  Cd Length: 691  Bit Score: 1133.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518    1 MSEKTFLVEIGTEELPPKALRSLAESFAANFTAELDNAGLAHGTVQWFAAPRRLALKVANLAEAQPDREIEKRGPAIAQA 80
Cdd:TIGR00211   1 MSSQTFLVEIGTEELPAKALRSLATQFADKLTAELNKAGLEHGNVEIFATPRRLAVLVKDLAELQPDRKEEKKGPAVKIA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518   81 FDAEGKPSKAAEGWARGCGITVDQAERLTTDKGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRP 160
Cdd:TIGR00211  81 FDADGKPTKAALGFAKGQGINVEDAEIFQTDKGEWLFVRKIHEGQPTKDLLPPLVLEFLAKLPFPKSMRWGNVDVRFIRP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  161 VHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERGkVIADYEERKAKIKADAEEAARKIGGN 240
Cdd:TIGR00211 161 IHWIVVLLGDDVIPIEILNVKSDRTTRGHRFLGEDEVSIESPDAYPEQLKENH-VIADPKERKAMILQQIETLAAKLGGI 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  241 ADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEALVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNE 320
Cdd:TIGR00211 240 ADIDEDLLDEVVSLVEYPTALLGKFEEEFLSLPAEVLVTTMKEHQRYFPVYDKDGKLLPHFITVSNGNSKDPQKIILGNE 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  321 KVVRPRLADAEFFFNTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGADVN---HATRAGLLSKCDL 397
Cdd:TIGR00211 320 KVLRARLSDAEFFYKTDLKKPLDDNLPRLETVVFQQELGTLKDKVDRISIIAGYIAQQLGADENmleHVKRAALLSKADL 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  398 MTNMVFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVACALAIADKMDTLAGIFGIGQHPKGDKDP 477
Cdd:TIGR00211 400 VTNMVYEFPELQGIMGEKYARHDGEDEAVAVAVNEQYLPRSAGDDLPSSLVGSVVAMADKLDTLASIFGIGQIPTGSKDP 479
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  478 FALRRAALGVLRIIVEKNLNLDLQTLTEEAVRLYGDKLTNANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLARRPTRP 557
Cdd:TIGR00211 480 FALRRAALGVLRIIVEKNLEIDLEELLTNFVLLQGDKLTNSNVLEDLEDFFLQRFRALLQDEGIDVDVIQAVLARRETDP 559
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  558 ADFDARMKAVSHFRTLEAAAALAAANKRVSNILAKSDEVLSDRVNASTLKEPEEIKLAMQVVVLRDKLEPYFAEGRYQDA 637
Cdd:TIGR00211 560 ADFDARAQALSHFRDLPKAEALAAANKRVANILKKGNPVLSSEIQANLFKEPKEKALFEAVLAIKMNAQESFESGDYETA 639
                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|..
gi 447214518  638 LVELAELREPVDAFFDKVMVMVDDKELRLNRLTMLEKLRELFLRVADISLLQ 689
Cdd:TIGR00211 640 LEALAELRAPVDEFFDSVMVMADDIELRQNRLNFLWGLRQLFLEVADISALQ 691
GlyS COG0751
Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]; ...
4-689 0e+00

Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]; Glycyl-tRNA synthetase, beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 440514 [Multi-domain]  Cd Length: 690  Bit Score: 1130.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518   4 KTFLVEIGTEELPPKALRSLAESFAANFTAELDNAGLAHGTVQWFAAPRRLALKVANLAEAQPDREIEKRGPAIAQAFDA 83
Cdd:COG0751    3 KDLLLEIGTEELPAKFLPKLLEQLAELLAAGLKEARLSFGEVEVYATPRRLAVLVEGLAEKQPDREEEVKGPPVKAAFDA 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  84 EGKPSKAAEGWARGCGITVDQAERLTTDKGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRPVHT 163
Cdd:COG0751   83 DGNPTKAALGFARSQGVDVDDLERRETDKGEYLFARKTIKGRPTAELLPEILPEAIAKLPFPKSMRWGDGDVRFVRPVRW 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518 164 VTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRErGKVIADYEERKAKIKADAEEAARKIGGNADL 243
Cdd:COG0751  163 LVALLGDEVVPFEILGLKSGRTTRGHRFLGPGPIEIASADDYEETLRE-GYVIADFEERRELIREQLEAAAAELGGTADI 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518 244 SESLLEEVASLVEWPVVLTAKFEEKFLAVPAEALVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNEKVV 323
Cdd:COG0751  242 DEDLLDEVTNLVEWPTALLGSFDEEFLELPQEVLITTMKEHQRYFPVLDADGKLLPYFITVSNGESKDPENVIAGNERVL 321
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518 324 RPRLADAEFFFNTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGAD--VNHATRAGLLSKCDLMTNM 401
Cdd:COG0751  322 RARLADAKFFYEEDLKKPLEDRVEKLKKVVFQEKLGTLADKVERIEALAAAIAEQLGLDeeAALAERAALLAKADLVTQM 401
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518 402 VFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVACALAIADKMDTLAGIFGIGQHPKGDKDPFALR 481
Cdd:COG0751  402 VGEFPELQGIMGRYYALHDGEPEEVALAIEEHYLPRFAGDALPSTLVGAIVALADKLDTLVGIFGIGLIPTGSKDPFALR 481
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518 482 RAALGVLRIIVEKNLNLDLQTLTEEAVRLYGDKLTNANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLARRPTRPADFD 561
Cdd:COG0751  482 RAALGILRILIEKGLPLDLSELLDAALALYGEQLDAEEVVEEVLDFFLERLRNLLQEEGISYDVVDAVLALGPDDPLDAD 561
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518 562 ARMKAVSHFRTLEAAAALAAANKRVSNILAKSDEVLSDRVNASTLKEPEEIKLAMQVVVLRDKLEPYFAEGRYQDALVEL 641
Cdd:COG0751  562 ARAKALAAFRALPEFEALAAANKRVANILKKAEGEVSAEVDPALLEEPAEKALYEALEELEPEVEALLAAGDYEEALAAL 641
                        650       660       670       680
                 ....*....|....*....|....*....|....*....|....*...
gi 447214518 642 AELREPVDAFFDKVMVMVDDKELRLNRLTMLEKLRELFLRVADISLLQ 689
Cdd:COG0751  642 AALRPPVDAFFDNVMVMAEDEALRANRLALLARLRALFLRVADISKLV 689
tRNA_synt_2f pfam02092
Glycyl-tRNA synthetase beta subunit;
6-551 0e+00

Glycyl-tRNA synthetase beta subunit;


Pssm-ID: 460442  Cd Length: 536  Bit Score: 865.17  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518    6 FLVEIGTEELPPKALRSLAESFAANFTAELDNAGLAHGTVQWFAAPRRLALKVANLAEAQPDREIEKRGPAIAQAFDAEG 85
Cdd:pfam02092   1 LLLEIGTEELPARFLPKALEQLAELITKLLKEARLSYGEVKVFATPRRLAVLVEGLAEKQPDREEEVKGPPVKAAFDADG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518   86 KPSKAAEGWARGCGITVDQAERLTTdKGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRPVHTVT 165
Cdd:pfam02092  81 NPTKAAEGFARSQGVSVEDLEIREK-KGEYLFARKTEPGRPTAELLPEILPEAIASLPFPKSMRWGDGDLRFVRPIRWLV 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  166 LLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERgKVIADYEERKAKIKADAEEAARKIGGNADLSE 245
Cdd:pfam02092 160 ALLGDEVVPFEILGIKSGRTTRGHRFLGPGPIEIASADDYEEKLREA-FVIADPEERREIILEQIEALAAEAGGTVDIDE 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  246 SLLEEVASLVEWPVVLTAKFEEKFLAVPAEALVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNEKVVRP 325
Cdd:pfam02092 239 DLLDEVTNLVEYPTALLGSFDEEFLELPEEVLITSMKEHQRYFPVRDADGKLLPYFITVSNGDPDDPENVIAGNERVLRA 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  326 RLADAEFFFNTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGAdvnhATRAGLLSKCDLMTNMVFEF 405
Cdd:pfam02092 319 RLADAKFFYEEDLKKPLESRVEKLKKVVFQEKLGTLADKVERIEALAAYLAEQLGD----AERAALLAKADLVTEMVGEF 394
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  406 TDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVACALAIADKMDTLAGIFGIGQHPKGDKDPFALRRAAL 485
Cdd:pfam02092 395 PELQGIMGRYYALADGEDEEVALAIEEHYLPRFAGDALPSTLVGAVVALADKLDTLVGIFGIGLIPTGSKDPFALRRAAL 474
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447214518  486 GVLRIIVEKNLNLDLQTLTEEAVRLYGDkltnANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLA 551
Cdd:pfam02092 475 GIIRILLEKGLDLDLRELLEKALELYGD----EEVLADLLEFFLDRLKNLLREEGIRYDVVDAVLA 536
PRK14908 PRK14908
glycine--tRNA ligase;
4-688 1.24e-172

glycine--tRNA ligase;


Pssm-ID: 237859 [Multi-domain]  Cd Length: 1000  Bit Score: 519.57  E-value: 1.24e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518    4 KTFLVEIGTEELPP-------KALRSLAesfaanfTAELDNAGLAHGTVQWFAAPRRLALKVANLAEAQPDREIEKRGPA 76
Cdd:PRK14908  312 ETLLFEIGSEELPAtfvpigiQQLESAL-------RELLADTRLGYEKLEVLGTPRRLALLVEDVAPREPDAEREKRGPR 384
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518   77 IAQAFDAEGKPSKAAEGWARGCGITVDQAERLTTD---------KGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKL 147
Cdd:PRK14908  385 LSAAFDADGTPTPAGEGFFRSQGVDISHLSALDQDgaieireinGVEYLFLVRPEPGRDAAAILANELPELIQSLRFPKK 464
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  148 MRWGASDVHFVRPVHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERGkVIADYEERKAKIK 227
Cdd:PRK14908  465 MRWDDPGLSYARPIRWLVALYGDQIVPISVGTLASGRTTRGHRQLDPPPVEIPSADGYVETLRQAC-VILSPKERREIIV 543
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  228 ADAEEAARKIGGNADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEALVYTMKGDQKYFPVYANDGKLLPNFIFVANI 307
Cdd:PRK14908  544 QGLQNLAADVQIDAIAEPRLIDEVTNLVEHPFVILGQFDEKFLELPKELLIAEMVKHQRYFPVRDAQGTLLNHFVIVADG 623
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  308 ESKDpqQIISGNEKVVRPRLADAEFFFNTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIG-ADVNHA 386
Cdd:PRK14908  624 SPDD--EIVRGNEKVLRARLTDGAFLFKADLKTPLETFVEKLKSVTYFEALGSLADKVERIKAHAEELAALLPlSARETL 701
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  387 TRAGLLSKCDLMTNMVFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVACALAIADKMDTLAGIFG 466
Cdd:PRK14908  702 DRAAELCKFDLVSQMVNEFPELQGIMGRYYAQRAGEPEAVAQALGEHELPRTAGDSLPASTTGALLSLADRLDNLLGCFA 781
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  467 IGQHPKGDKDPFALRRAALGVLRIIVEKNLNLDLQTLTEEAVRLYGDKL--TNANVVDDVIDFMLGRFRAWYQDEGYTVD 544
Cdd:PRK14908  782 LGLKPTSSSDPYALRRQALGVLTLLRATPASLDLEDLLARLARHFPSTTvwVKEAVLDEVLEFVWGRLKTQLLDLGFDKD 861
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  545 TIQAVLARRPTRPADFDARMKAVSHFRTLEAAAALAAANKRVSNILAKSDEVLSDrvnASTLKEPEEIKLAmQVVvlrDK 624
Cdd:PRK14908  862 EIAAVLPDACKNPAEADKTAQALQELKSTEIFAEIAAALNRLKRILASLSFSVTD---ASLLLEPAELNLK-QAL---DA 934
                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447214518  625 LEPYFAEG--RYQDALVELAELREPVDAFFDKVMVMVDDKELRLNRLTMLEKLRELFLRVADISLL 688
Cdd:PRK14908  935 FREELTELpiDLKDYVAAAAELPQAVNTFFDEVLVMADDEAIRNARLGLLAAIRDLKFGVLDWDAL 1000
DALR_1 smart00836
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ...
585-679 3.58e-05

DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.


Pssm-ID: 214846 [Multi-domain]  Cd Length: 122  Bit Score: 43.72  E-value: 3.58e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518   585 RVSNILAKSDEVL-----SDRVNASTLKEPEEIKLAMQV-----VVLR--DKLEPYFAEgRYqdalveLAELREPVDAFF 652
Cdd:smart00836   7 RICSILRKAGEAGetlpdIADADLSLLTEPEEWALLLKLarfpeVLEAaaEQLEPHRLA-NY------LYDLAAAFHSFY 79
                           90       100
                   ....*....|....*....|....*...
gi 447214518   653 DKVMVMV-DDKELRLNRLTMLEKLRELF 679
Cdd:smart00836  80 NRVRVLGeENPELRKARLALLKAVRQVL 107
Anticodon_Ia_Arg cd07956
Anticodon-binding domain of arginyl tRNA synthetases; This domain is found in arginyl tRNA ...
585-677 2.46e-04

Anticodon-binding domain of arginyl tRNA synthetases; This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.


Pssm-ID: 153410 [Multi-domain]  Cd Length: 156  Bit Score: 42.20  E-value: 2.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518 585 RVSNILAKSDEVLSD--RVNASTLKEPEEIKLAMQVvvlrdklepyfaeGRYQDALVELAELREP-------------VD 649
Cdd:cd07956   45 RLCSILRKAGETIEAeaDADLSLLPEPDERDLILLL-------------AKFPEVVKNAAETLEPhtiatylfdlahaFS 111
                         90       100
                 ....*....|....*....|....*...
gi 447214518 650 AFFDKVMVMVDDKELRLNRLTMLEKLRE 677
Cdd:cd07956  112 KFYNACPVLGAEEELRNARLALVAAARQ 139
 
Name Accession Description Interval E-value
glyS TIGR00211
glycyl-tRNA synthetase, tetrameric type, beta subunit; The glycyl-tRNA synthetases differ even ...
1-689 0e+00

glycyl-tRNA synthetase, tetrameric type, beta subunit; The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 272962 [Multi-domain]  Cd Length: 691  Bit Score: 1133.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518    1 MSEKTFLVEIGTEELPPKALRSLAESFAANFTAELDNAGLAHGTVQWFAAPRRLALKVANLAEAQPDREIEKRGPAIAQA 80
Cdd:TIGR00211   1 MSSQTFLVEIGTEELPAKALRSLATQFADKLTAELNKAGLEHGNVEIFATPRRLAVLVKDLAELQPDRKEEKKGPAVKIA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518   81 FDAEGKPSKAAEGWARGCGITVDQAERLTTDKGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRP 160
Cdd:TIGR00211  81 FDADGKPTKAALGFAKGQGINVEDAEIFQTDKGEWLFVRKIHEGQPTKDLLPPLVLEFLAKLPFPKSMRWGNVDVRFIRP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  161 VHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERGkVIADYEERKAKIKADAEEAARKIGGN 240
Cdd:TIGR00211 161 IHWIVVLLGDDVIPIEILNVKSDRTTRGHRFLGEDEVSIESPDAYPEQLKENH-VIADPKERKAMILQQIETLAAKLGGI 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  241 ADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEALVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNE 320
Cdd:TIGR00211 240 ADIDEDLLDEVVSLVEYPTALLGKFEEEFLSLPAEVLVTTMKEHQRYFPVYDKDGKLLPHFITVSNGNSKDPQKIILGNE 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  321 KVVRPRLADAEFFFNTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGADVN---HATRAGLLSKCDL 397
Cdd:TIGR00211 320 KVLRARLSDAEFFYKTDLKKPLDDNLPRLETVVFQQELGTLKDKVDRISIIAGYIAQQLGADENmleHVKRAALLSKADL 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  398 MTNMVFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVACALAIADKMDTLAGIFGIGQHPKGDKDP 477
Cdd:TIGR00211 400 VTNMVYEFPELQGIMGEKYARHDGEDEAVAVAVNEQYLPRSAGDDLPSSLVGSVVAMADKLDTLASIFGIGQIPTGSKDP 479
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  478 FALRRAALGVLRIIVEKNLNLDLQTLTEEAVRLYGDKLTNANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLARRPTRP 557
Cdd:TIGR00211 480 FALRRAALGVLRIIVEKNLEIDLEELLTNFVLLQGDKLTNSNVLEDLEDFFLQRFRALLQDEGIDVDVIQAVLARRETDP 559
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  558 ADFDARMKAVSHFRTLEAAAALAAANKRVSNILAKSDEVLSDRVNASTLKEPEEIKLAMQVVVLRDKLEPYFAEGRYQDA 637
Cdd:TIGR00211 560 ADFDARAQALSHFRDLPKAEALAAANKRVANILKKGNPVLSSEIQANLFKEPKEKALFEAVLAIKMNAQESFESGDYETA 639
                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|..
gi 447214518  638 LVELAELREPVDAFFDKVMVMVDDKELRLNRLTMLEKLRELFLRVADISLLQ 689
Cdd:TIGR00211 640 LEALAELRAPVDEFFDSVMVMADDIELRQNRLNFLWGLRQLFLEVADISALQ 691
GlyS COG0751
Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]; ...
4-689 0e+00

Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]; Glycyl-tRNA synthetase, beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 440514 [Multi-domain]  Cd Length: 690  Bit Score: 1130.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518   4 KTFLVEIGTEELPPKALRSLAESFAANFTAELDNAGLAHGTVQWFAAPRRLALKVANLAEAQPDREIEKRGPAIAQAFDA 83
Cdd:COG0751    3 KDLLLEIGTEELPAKFLPKLLEQLAELLAAGLKEARLSFGEVEVYATPRRLAVLVEGLAEKQPDREEEVKGPPVKAAFDA 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  84 EGKPSKAAEGWARGCGITVDQAERLTTDKGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRPVHT 163
Cdd:COG0751   83 DGNPTKAALGFARSQGVDVDDLERRETDKGEYLFARKTIKGRPTAELLPEILPEAIAKLPFPKSMRWGDGDVRFVRPVRW 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518 164 VTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRErGKVIADYEERKAKIKADAEEAARKIGGNADL 243
Cdd:COG0751  163 LVALLGDEVVPFEILGLKSGRTTRGHRFLGPGPIEIASADDYEETLRE-GYVIADFEERRELIREQLEAAAAELGGTADI 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518 244 SESLLEEVASLVEWPVVLTAKFEEKFLAVPAEALVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNEKVV 323
Cdd:COG0751  242 DEDLLDEVTNLVEWPTALLGSFDEEFLELPQEVLITTMKEHQRYFPVLDADGKLLPYFITVSNGESKDPENVIAGNERVL 321
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518 324 RPRLADAEFFFNTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGAD--VNHATRAGLLSKCDLMTNM 401
Cdd:COG0751  322 RARLADAKFFYEEDLKKPLEDRVEKLKKVVFQEKLGTLADKVERIEALAAAIAEQLGLDeeAALAERAALLAKADLVTQM 401
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518 402 VFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVACALAIADKMDTLAGIFGIGQHPKGDKDPFALR 481
Cdd:COG0751  402 VGEFPELQGIMGRYYALHDGEPEEVALAIEEHYLPRFAGDALPSTLVGAIVALADKLDTLVGIFGIGLIPTGSKDPFALR 481
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518 482 RAALGVLRIIVEKNLNLDLQTLTEEAVRLYGDKLTNANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLARRPTRPADFD 561
Cdd:COG0751  482 RAALGILRILIEKGLPLDLSELLDAALALYGEQLDAEEVVEEVLDFFLERLRNLLQEEGISYDVVDAVLALGPDDPLDAD 561
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518 562 ARMKAVSHFRTLEAAAALAAANKRVSNILAKSDEVLSDRVNASTLKEPEEIKLAMQVVVLRDKLEPYFAEGRYQDALVEL 641
Cdd:COG0751  562 ARAKALAAFRALPEFEALAAANKRVANILKKAEGEVSAEVDPALLEEPAEKALYEALEELEPEVEALLAAGDYEEALAAL 641
                        650       660       670       680
                 ....*....|....*....|....*....|....*....|....*...
gi 447214518 642 AELREPVDAFFDKVMVMVDDKELRLNRLTMLEKLRELFLRVADISLLQ 689
Cdd:COG0751  642 AALRPPVDAFFDNVMVMAEDEALRANRLALLARLRALFLRVADISKLV 689
tRNA_synt_2f pfam02092
Glycyl-tRNA synthetase beta subunit;
6-551 0e+00

Glycyl-tRNA synthetase beta subunit;


Pssm-ID: 460442  Cd Length: 536  Bit Score: 865.17  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518    6 FLVEIGTEELPPKALRSLAESFAANFTAELDNAGLAHGTVQWFAAPRRLALKVANLAEAQPDREIEKRGPAIAQAFDAEG 85
Cdd:pfam02092   1 LLLEIGTEELPARFLPKALEQLAELITKLLKEARLSYGEVKVFATPRRLAVLVEGLAEKQPDREEEVKGPPVKAAFDADG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518   86 KPSKAAEGWARGCGITVDQAERLTTdKGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRPVHTVT 165
Cdd:pfam02092  81 NPTKAAEGFARSQGVSVEDLEIREK-KGEYLFARKTEPGRPTAELLPEILPEAIASLPFPKSMRWGDGDLRFVRPIRWLV 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  166 LLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERgKVIADYEERKAKIKADAEEAARKIGGNADLSE 245
Cdd:pfam02092 160 ALLGDEVVPFEILGIKSGRTTRGHRFLGPGPIEIASADDYEEKLREA-FVIADPEERREIILEQIEALAAEAGGTVDIDE 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  246 SLLEEVASLVEWPVVLTAKFEEKFLAVPAEALVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNEKVVRP 325
Cdd:pfam02092 239 DLLDEVTNLVEYPTALLGSFDEEFLELPEEVLITSMKEHQRYFPVRDADGKLLPYFITVSNGDPDDPENVIAGNERVLRA 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  326 RLADAEFFFNTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGAdvnhATRAGLLSKCDLMTNMVFEF 405
Cdd:pfam02092 319 RLADAKFFYEEDLKKPLESRVEKLKKVVFQEKLGTLADKVERIEALAAYLAEQLGD----AERAALLAKADLVTEMVGEF 394
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  406 TDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVACALAIADKMDTLAGIFGIGQHPKGDKDPFALRRAAL 485
Cdd:pfam02092 395 PELQGIMGRYYALADGEDEEVALAIEEHYLPRFAGDALPSTLVGAVVALADKLDTLVGIFGIGLIPTGSKDPFALRRAAL 474
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447214518  486 GVLRIIVEKNLNLDLQTLTEEAVRLYGDkltnANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLA 551
Cdd:pfam02092 475 GIIRILLEKGLDLDLRELLEKALELYGD----EEVLADLLEFFLDRLKNLLREEGIRYDVVDAVLA 536
PRK14908 PRK14908
glycine--tRNA ligase;
4-688 1.24e-172

glycine--tRNA ligase;


Pssm-ID: 237859 [Multi-domain]  Cd Length: 1000  Bit Score: 519.57  E-value: 1.24e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518    4 KTFLVEIGTEELPP-------KALRSLAesfaanfTAELDNAGLAHGTVQWFAAPRRLALKVANLAEAQPDREIEKRGPA 76
Cdd:PRK14908  312 ETLLFEIGSEELPAtfvpigiQQLESAL-------RELLADTRLGYEKLEVLGTPRRLALLVEDVAPREPDAEREKRGPR 384
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518   77 IAQAFDAEGKPSKAAEGWARGCGITVDQAERLTTD---------KGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKL 147
Cdd:PRK14908  385 LSAAFDADGTPTPAGEGFFRSQGVDISHLSALDQDgaieireinGVEYLFLVRPEPGRDAAAILANELPELIQSLRFPKK 464
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  148 MRWGASDVHFVRPVHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERGkVIADYEERKAKIK 227
Cdd:PRK14908  465 MRWDDPGLSYARPIRWLVALYGDQIVPISVGTLASGRTTRGHRQLDPPPVEIPSADGYVETLRQAC-VILSPKERREIIV 543
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  228 ADAEEAARKIGGNADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEALVYTMKGDQKYFPVYANDGKLLPNFIFVANI 307
Cdd:PRK14908  544 QGLQNLAADVQIDAIAEPRLIDEVTNLVEHPFVILGQFDEKFLELPKELLIAEMVKHQRYFPVRDAQGTLLNHFVIVADG 623
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  308 ESKDpqQIISGNEKVVRPRLADAEFFFNTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIG-ADVNHA 386
Cdd:PRK14908  624 SPDD--EIVRGNEKVLRARLTDGAFLFKADLKTPLETFVEKLKSVTYFEALGSLADKVERIKAHAEELAALLPlSARETL 701
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  387 TRAGLLSKCDLMTNMVFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVACALAIADKMDTLAGIFG 466
Cdd:PRK14908  702 DRAAELCKFDLVSQMVNEFPELQGIMGRYYAQRAGEPEAVAQALGEHELPRTAGDSLPASTTGALLSLADRLDNLLGCFA 781
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  467 IGQHPKGDKDPFALRRAALGVLRIIVEKNLNLDLQTLTEEAVRLYGDKL--TNANVVDDVIDFMLGRFRAWYQDEGYTVD 544
Cdd:PRK14908  782 LGLKPTSSSDPYALRRQALGVLTLLRATPASLDLEDLLARLARHFPSTTvwVKEAVLDEVLEFVWGRLKTQLLDLGFDKD 861
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  545 TIQAVLARRPTRPADFDARMKAVSHFRTLEAAAALAAANKRVSNILAKSDEVLSDrvnASTLKEPEEIKLAmQVVvlrDK 624
Cdd:PRK14908  862 EIAAVLPDACKNPAEADKTAQALQELKSTEIFAEIAAALNRLKRILASLSFSVTD---ASLLLEPAELNLK-QAL---DA 934
                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447214518  625 LEPYFAEG--RYQDALVELAELREPVDAFFDKVMVMVDDKELRLNRLTMLEKLRELFLRVADISLL 688
Cdd:PRK14908  935 FREELTELpiDLKDYVAAAAELPQAVNTFFDEVLVMADDEAIRNARLGLLAAIRDLKFGVLDWDAL 1000
DALR_1 pfam05746
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ...
584-679 9.45e-09

DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteriztic conserved amino acids.


Pssm-ID: 399042 [Multi-domain]  Cd Length: 117  Bit Score: 53.81  E-value: 9.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518  584 KRVSNILAKSDE-VLSDRVNASTLKEPEEIKLAMQVVVLRDKLEPYFAEGRYQDALVELAELREPVDAFFDKVMVMVDDK 662
Cdd:pfam05746   6 ARICSILRKAGElGINLDIDADLLTEEEEKELLKALLQFPEVLEEAAEELEPHRLANYLYELASAFHSFYNNCRVLDEDN 85
                          90
                  ....*....|....*..
gi 447214518  663 ELRLNRLTMLEKLRELF 679
Cdd:pfam05746  86 EERNARLALLKAVRQVL 102
DALR_1 smart00836
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ...
585-679 3.58e-05

DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.


Pssm-ID: 214846 [Multi-domain]  Cd Length: 122  Bit Score: 43.72  E-value: 3.58e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518   585 RVSNILAKSDEVL-----SDRVNASTLKEPEEIKLAMQV-----VVLR--DKLEPYFAEgRYqdalveLAELREPVDAFF 652
Cdd:smart00836   7 RICSILRKAGEAGetlpdIADADLSLLTEPEEWALLLKLarfpeVLEAaaEQLEPHRLA-NY------LYDLAAAFHSFY 79
                           90       100
                   ....*....|....*....|....*...
gi 447214518   653 DKVMVMV-DDKELRLNRLTMLEKLRELF 679
Cdd:smart00836  80 NRVRVLGeENPELRKARLALLKAVRQVL 107
Anticodon_Ia_Arg cd07956
Anticodon-binding domain of arginyl tRNA synthetases; This domain is found in arginyl tRNA ...
585-677 2.46e-04

Anticodon-binding domain of arginyl tRNA synthetases; This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.


Pssm-ID: 153410 [Multi-domain]  Cd Length: 156  Bit Score: 42.20  E-value: 2.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447214518 585 RVSNILAKSDEVLSD--RVNASTLKEPEEIKLAMQVvvlrdklepyfaeGRYQDALVELAELREP-------------VD 649
Cdd:cd07956   45 RLCSILRKAGETIEAeaDADLSLLPEPDERDLILLL-------------AKFPEVVKNAAETLEPhtiatylfdlahaFS 111
                         90       100
                 ....*....|....*....|....*...
gi 447214518 650 AFFDKVMVMVDDKELRLNRLTMLEKLRE 677
Cdd:cd07956  112 KFYNACPVLGAEEELRNARLALVAAARQ 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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