NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|485663176|ref|WP_001304636|]
View 

hypothetical protein [Escherichia coli]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DksA super family cl42442
RNA polymerase-binding transcription factor DksA [Transcription];
2-60 4.97e-03

RNA polymerase-binding transcription factor DksA [Transcription];


The actual alignment was detected with superfamily member COG1734:

Pssm-ID: 441340  Cd Length: 119  Bit Score: 32.57  E-value: 4.97e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 485663176   2 ADSADIAYENEQFSMSIRLKNRIRNRLPET------------GFCYNCGEP--------VKTGLFCdGDCREDYEKRER 60
Cdd:COG1734   41 PDPADRATEEEERELELALRDRERKLLRKIdaalerieegtyGICEECGEPiplerleaRPTATLC-IECKERQERRER 118
 
Name Accession Description Interval E-value
DksA COG1734
RNA polymerase-binding transcription factor DksA [Transcription];
2-60 4.97e-03

RNA polymerase-binding transcription factor DksA [Transcription];


Pssm-ID: 441340  Cd Length: 119  Bit Score: 32.57  E-value: 4.97e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 485663176   2 ADSADIAYENEQFSMSIRLKNRIRNRLPET------------GFCYNCGEP--------VKTGLFCdGDCREDYEKRER 60
Cdd:COG1734   41 PDPADRATEEEERELELALRDRERKLLRKIdaalerieegtyGICEECGEPiplerleaRPTATLC-IECKERQERRER 118
 
Name Accession Description Interval E-value
DksA COG1734
RNA polymerase-binding transcription factor DksA [Transcription];
2-60 4.97e-03

RNA polymerase-binding transcription factor DksA [Transcription];


Pssm-ID: 441340  Cd Length: 119  Bit Score: 32.57  E-value: 4.97e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 485663176   2 ADSADIAYENEQFSMSIRLKNRIRNRLPET------------GFCYNCGEP--------VKTGLFCdGDCREDYEKRER 60
Cdd:COG1734   41 PDPADRATEEEERELELALRDRERKLLRKIdaalerieegtyGICEECGEPiplerleaRPTATLC-IECKERQERRER 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH