NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|485668076|ref|WP_001309245|]
View 

MULTISPECIES: ANR family transcriptional regulator [Gammaproteobacteria]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ANR_neg_reg super family cl41367
ANR family transcriptional regulator; ANR family transcriptional regulators include the ...
 15-65 1.13e-05

ANR family transcriptional regulator; ANR family transcriptional regulators include the AggR-activated regulator Aar. The name ANR (AraC Negative Regulators) refers to an effect on, rather than homology to, certain AraC family transcriptional regulators.


The actual alignment was detected with superfamily member NF033650:

Pssm-ID: 411261  Cd Length: 54  Bit Score: 38.40  E-value: 1.13e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 485668076 15 RYRQVGRRAVRLEVRGDWPGAAEAWLRAAQSAPRTDWQQFARKRAEHCHRR 65
Cdd:NF033650  1 LYKRYAEEAAEAERAGDYARAAELWRKASLLAKNEENREWCENRADFCEKA 51
 
Name Accession Description Interval E-value
ANR_neg_reg NF033650
ANR family transcriptional regulator; ANR family transcriptional regulators include the ...
 15-65 1.13e-05

ANR family transcriptional regulator; ANR family transcriptional regulators include the AggR-activated regulator Aar. The name ANR (AraC Negative Regulators) refers to an effect on, rather than homology to, certain AraC family transcriptional regulators.


Pssm-ID: 411261  Cd Length: 54  Bit Score: 38.40  E-value: 1.13e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 485668076 15 RYRQVGRRAVRLEVRGDWPGAAEAWLRAAQSAPRTDWQQFARKRAEHCHRR 65
Cdd:NF033650  1 LYKRYAEEAAEAERAGDYARAAELWRKASLLAKNEENREWCENRADFCEKA 51
DUF6205 pfam19708
Family of unknown function (DUF6205); This entry represents a member of a biosynthetic gene ...
 1-41 8.19e-03

Family of unknown function (DUF6205); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000078) is described by MIBiG as an example of the following biosynthetic class, polyketide. It includes a member from the incednine biosynthetic gene cluster from Streptomyces sp. ML694-90F3.


Pssm-ID: 437540  Cd Length: 143  Bit Score: 32.60  E-value: 8.19e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 485668076    1 MNGTGRDSQNSGVWRYRQVGRRAVRLEVRGDWPGAAEAWLR 41
Cdd:pfam19708 103 IVVQPTGNGDPDIWRVVVVDGGAVEERAALVWPDGTEELAR 143
 
Name Accession Description Interval E-value
ANR_neg_reg NF033650
ANR family transcriptional regulator; ANR family transcriptional regulators include the ...
 15-65 1.13e-05

ANR family transcriptional regulator; ANR family transcriptional regulators include the AggR-activated regulator Aar. The name ANR (AraC Negative Regulators) refers to an effect on, rather than homology to, certain AraC family transcriptional regulators.


Pssm-ID: 411261  Cd Length: 54  Bit Score: 38.40  E-value: 1.13e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 485668076 15 RYRQVGRRAVRLEVRGDWPGAAEAWLRAAQSAPRTDWQQFARKRAEHCHRR 65
Cdd:NF033650  1 LYKRYAEEAAEAERAGDYARAAELWRKASLLAKNEENREWCENRADFCEKA 51
DUF6205 pfam19708
Family of unknown function (DUF6205); This entry represents a member of a biosynthetic gene ...
 1-41 8.19e-03

Family of unknown function (DUF6205); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000078) is described by MIBiG as an example of the following biosynthetic class, polyketide. It includes a member from the incednine biosynthetic gene cluster from Streptomyces sp. ML694-90F3.


Pssm-ID: 437540  Cd Length: 143  Bit Score: 32.60  E-value: 8.19e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 485668076    1 MNGTGRDSQNSGVWRYRQVGRRAVRLEVRGDWPGAAEAWLR 41
Cdd:pfam19708 103 IVVQPTGNGDPDIWRVVVVDGGAVEERAALVWPDGTEELAR 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH