type VI secretion-associated protein, VC_A0119 family; This protein family is one of two ...
187-477
1.52e-91
type VI secretion-associated protein, VC_A0119 family; This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812). [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
:
Pssm-ID: 274543 Cd Length: 301 Bit Score: 280.42 E-value: 1.52e-91
ImpA, N-terminal, type VI secretion system; This family represents a conserved region located ...
33-110
7.62e-06
ImpA, N-terminal, type VI secretion system; This family represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans. The ImpA gene in Vibrio cholera and many other bacteria is expressed from the virulence factor operon which produces the pathogenic injection, type VI secretion system; although the exact function of this gene-product is not known it appears to be an essential component of the pathogenic effect.
The actual alignment was detected with superfamily member pfam06812:
Pssm-ID: 450411 [Multi-domain] Cd Length: 115 Bit Score: 44.92 E-value: 7.62e-06
type VI secretion-associated protein, VC_A0119 family; This protein family is one of two ...
187-477
1.52e-91
type VI secretion-associated protein, VC_A0119 family; This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812). [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274543 Cd Length: 301 Bit Score: 280.42 E-value: 1.52e-91
Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ; T6SS_VasJ is a family from ...
233-476
5.75e-74
Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ; T6SS_VasJ is a family from Gram-negative bacteria that forms a component of the type VI pathogenic secretion system. In the case of the Escherichia coli RS218 strain UniProtKB:G8IRL4, EvfF,it represents expression of the full-length gene; whereas it is just the C-terminal part of EvfE, UniProtKB:G8IRL3. The N-terminal part of these sequences is in family ImpA_N, pfam06812.
Pssm-ID: 435696 Cd Length: 254 Bit Score: 233.72 E-value: 5.75e-74
ImpA, N-terminal, type VI secretion system; This family represents a conserved region located ...
33-110
7.62e-06
ImpA, N-terminal, type VI secretion system; This family represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans. The ImpA gene in Vibrio cholera and many other bacteria is expressed from the virulence factor operon which produces the pathogenic injection, type VI secretion system; although the exact function of this gene-product is not known it appears to be an essential component of the pathogenic effect.
Pssm-ID: 429132 [Multi-domain] Cd Length: 115 Bit Score: 44.92 E-value: 7.62e-06
type VI secretion-associated protein, VC_A0119 family; This protein family is one of two ...
187-477
1.52e-91
type VI secretion-associated protein, VC_A0119 family; This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812). [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274543 Cd Length: 301 Bit Score: 280.42 E-value: 1.52e-91
Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ; T6SS_VasJ is a family from ...
233-476
5.75e-74
Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ; T6SS_VasJ is a family from Gram-negative bacteria that forms a component of the type VI pathogenic secretion system. In the case of the Escherichia coli RS218 strain UniProtKB:G8IRL4, EvfF,it represents expression of the full-length gene; whereas it is just the C-terminal part of EvfE, UniProtKB:G8IRL3. The N-terminal part of these sequences is in family ImpA_N, pfam06812.
Pssm-ID: 435696 Cd Length: 254 Bit Score: 233.72 E-value: 5.75e-74
ImpA, N-terminal, type VI secretion system; This family represents a conserved region located ...
33-110
7.62e-06
ImpA, N-terminal, type VI secretion system; This family represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans. The ImpA gene in Vibrio cholera and many other bacteria is expressed from the virulence factor operon which produces the pathogenic injection, type VI secretion system; although the exact function of this gene-product is not known it appears to be an essential component of the pathogenic effect.
Pssm-ID: 429132 [Multi-domain] Cd Length: 115 Bit Score: 44.92 E-value: 7.62e-06
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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of your query sequence and the protein sequences used to curate the domain model,
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The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits
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Domains are color coded according to superfamilies
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if a domain or superfamily has been annotated with functional sites (conserved features),
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click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
Click on the domain model's accession number to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.
To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page,
or click on the triangles, if present, that represent functional sites (conserved features)
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
(labeled illustration) Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance.
(labeled illustration) Four types of hits can be shown, as available,
for each region on the query sequence:
specific hits meet or exceed a domain-specific e-value threshold
(illustrated example)
and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits
meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the
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the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains
Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool
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