|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
1-1046 |
0e+00 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 1602.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 1 MKILSLRLKNLNSLKGEWKVDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNTVSQSQNDLMTRDTAECL 80
Cdd:PRK10246 1 MKILSLRLKNLNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDTAECL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 81 AEVEFEVKGETWRAFWSQNRARNQPDGNLQAPRVELARCSDGKIFADKVKDKLEMIATLTGLDYGRFTRSMLLSQGQFAA 160
Cdd:PRK10246 81 AEVEFEVKGEAYRAFWSQNRARNQPDGNLQAPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 161 FLNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARLELEKLQAQASGVALLADEQLQQLEASLQALTDEEKRLLASQQ 240
Cdd:PRK10246 161 FLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 241 GQQQHLHWLTRKNELHTELHARQQALYAAQEAREKAQPQLAALTLAQPARQLRPHWERIQEQTRAVERVRQHSDEVNARL 320
Cdd:PRK10246 241 QQQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWERIQEQSAALAHTRQQIEEVNTRL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 321 QSAYRLRQRIRSCAHRQFTQLNATGQRLKTWLAEHDGIRVWRSELAGWRALLTQQSHDRAQLSQWQQQLLSDTRQRDALP 400
Cdd:PRK10246 321 QSTMALRARIRHHAAKQSAELQAQQQSLNTWLAEHDRFRQWNNELAGWRAQFSQQTSDREQLRQWQQQLTHAEQKLNALP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 401 PLTLDLTPQALAEARALHTRQRPLRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQYTQRLADKRLSYKTKAQELADV 480
Cdd:PRK10246 401 AITLTLTADEVAAALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 481 RTICEQEARIKDLESQRAHLQSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQL 560
Cdd:PRK10246 481 KTICEQEARIKDLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLDALEKEVKKLGEEGAALRGQLDALTKQL 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 561 QRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRHALQTQIAAHTEQVARFTAQIA 640
Cdd:PRK10246 561 QRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 641 QRQASLTADLAQYTLSLPAPENEASWLNERADEAKIWQQRQTEFADLQTQIDRLAPLLETLPQTDTA-DSDDDVPLDNWR 719
Cdd:PRK10246 641 QRQQQLLTALAGYALTLPQEDEEASWLATRQQEAQSWQQRQNELTALQNRIQQLTPLLETLPQSDDLpHSEETVALDNWR 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 720 QAHDECVSLQSQLQTLQEQTTQEQQRATEAIAHFDAALKNSPFDRQATFLAALLDEETVTRLEKQQQTLESQLQQAKALS 799
Cdd:PRK10246 721 QVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTLV 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 800 AQSAQALADHQQQPPAGLDPTCTAEQLAQRLAQLAQQLRENTTRQGEIRQQIKQDADNRQRQRALMAEMKQASQQVEDWG 879
Cdd:PRK10246 801 TQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQATQQVEDWG 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 880 YLNALIGSKEGDKFRKFAQGLTLDNLVWLANHQLTRLHGRYLLQRKASDALELEVVDTWQADAVRDTRTLSGGESFLVSL 959
Cdd:PRK10246 881 YLNSLIGSKEGDKFRKFAQGLTLDNLVWLANQQLTRLHGRYLLQRKASEALELEVVDTWQADAVRDTRTLSGGESFLVSL 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 960 ALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDAALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKL 1039
Cdd:PRK10246 961 ALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKL 1040
|
....*..
gi 486167328 1040 DKAFAVE 1046
Cdd:PRK10246 1041 DSAFAVK 1047
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1-1038 |
0e+00 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 706.35 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 1 MKILSLRLKNLNSLKGEWKVDFTAEPfasnGLFAITGPTGAGKTTLLDAICLALYHETPRLNTVSQSQNDLMTRDTAECL 80
Cdd:TIGR00618 1 MKPLRLTLKNFGSYKGTHTIDFTALG----PIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVIRSLNSLYAAPSEAAF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 81 AEVEFEVKGETWRAFWSQNRARNQPDGNLQAPRVELARCSDGKIFADKVKDKLEMIATLTGLDYGRFTRSMLLSQGQFAA 160
Cdd:TIGR00618 77 AELEFSLGTKIYRVHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLPQGEFAQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 161 FLNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARLELEKLQAQASGVALLADEQLQQLEASLQALTDEEKRLLASQQ 240
Cdd:TIGR00618 157 FLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQ 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 241 GQQQHLHWLTRKNELHTELHARQQALYAAQEAREKAQPQLAALTLAQPARQLRPHWERIQEQTRAVERVRQHSDEVNARL 320
Cdd:TIGR00618 237 QTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTEL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 321 QSAYRLRQRI---RSCAHRQFTQLNATGQRLKTWLAEHDGIRVWRSELAGWRALLTQQSHDRAQLSQWQQQLLSDTRQRD 397
Cdd:TIGR00618 317 QSKMRSRAKLlmkRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQ 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 398 ALPPLTLDLTPQAlAEARALHTRQRPLRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQYTQRLADKRLSYKTKAQEL 477
Cdd:TIGR00618 397 SLCKELDILQREQ-ATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQL 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 478 ADVRTICEQEARIKDLESQRAHLQSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALT 557
Cdd:TIGR00618 476 QTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSER 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 558 QQLQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRHALQTQIAAHTEQVARFTA 637
Cdd:TIGR00618 556 KQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQ 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 638 QIAQRQASLTADLAQYTLSLPAPENEASWLNERADEAKIWQQRQTEFADLQTQIDRLAPLLETLPQTDTA-DSDDDVPLD 716
Cdd:TIGR00618 636 QCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLlRELETHIEE 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 717 NWRQAHDECVSLQSQLQTLQEQTTQEQQRATEAIAHFDAALKNSPFDRQATFLAALLDEETVTRLEKQQQTLESQLQQAK 796
Cdd:TIGR00618 716 YDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLRE 795
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 797 ALSAQSAQALADHQQQPPAGLDP-TCTAEQLAQRLAQLAQQLRENTTRQGEIRQQIKQDADNRQRQRALMAEMKQASQQV 875
Cdd:TIGR00618 796 EDTHLLKTLEAEIGQEIPSDEDIlNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 876 EDWGYLNALIGSKEGDKFRKFAQGLTLDNLVWLANHQLTRLHGRYLLQRKASD--ALELEVVDTWQADAVRDTRTLSGGE 953
Cdd:TIGR00618 876 DKLNGINQIKIQFDGDALIKFLHEITLYANVRLANQSEGRFHGRYADSHVNARkyQGLALLVADAYTGSVRPSATLSGGE 955
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 954 SFLV--SLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDAALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKI 1031
Cdd:TIGR00618 956 TFLAslSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPHRILVKKT 1035
|
....*..
gi 486167328 1032 NGLGYSK 1038
Cdd:TIGR00618 1036 NAGSHVM 1042
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
2-221 |
7.48e-30 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 117.80 E-value: 7.48e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 2 KILSLRLKNLNSLKGEWKVDFTAepfasnGLFAITGPTGAGKTTLLDAICLALYHETPRlntVSQSQNDLMTRDTAECLA 81
Cdd:COG0419 1 KLLRLRLENFRSYRDTETIDFDD------GLNLIVGPNGAGKSTILEAIRYALYGKARS---RSKLRSDLINVGSEEASV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 82 EVEFEVKGETWRAFWsqnrarnqpdgnlqaprvelarcsdgkifadkvkdklemiatltgldygrftrsmllSQGQFAAF 161
Cdd:COG0419 72 ELEFEHGGKRYRIER---------------------------------------------------------RQGEFAEF 94
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 162 LNAKAKERAELLEELTGTEIYGQISAQVfekhKSARLELEKLQAQASGVALLADEQLQQL 221
Cdd:COG0419 95 LEAKPSERKEALKRLLGLEIYEELKERL----KELEEALESALEELAELQKLKQEILAQL 150
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
1-162 |
3.53e-26 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 107.35 E-value: 3.53e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 1 MKILSLRLKNLNSLKGEWKVDFTaePFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLntvSQSQNDLMTRDTAECL 80
Cdd:cd03279 1 MKPLKLELKNFGPFREEQVIDFT--GLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRY---GRQENLRSVFAPGEDT 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 81 AEV--EFEVKGETWRAFwsqnRARnqpdgnlqaprvelarcsdgkifadkvkdklemiatltGLDYGRFTRSMLLSQGQF 158
Cdd:cd03279 76 AEVsfTFQLGGKKYRVE----RSR--------------------------------------GLDYDQFTRIVLLPQGEF 113
|
....
gi 486167328 159 AAFL 162
Cdd:cd03279 114 DRFL 117
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
6-206 |
1.18e-22 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 96.41 E-value: 1.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 6 LRLKNLNSLKgEWKVDFtaepfaSNGLFAITGPTGAGKTTLLDAICLALYHETPRLNTVSQSQN-----DLMTRDTAECL 80
Cdd:pfam13476 1 LTIENFRSFR-DQTIDF------SKGLTLITGPNGSGKTTILDAIKLALYGKTSRLKRKSGGGFvkgdiRIGLEGKGKAY 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 81 AEVEFEVKGETW--RAFWSQNRARNQPDGNLQAPRVELarcsdgkifadKVKDKLEMIATLTGLDYGRFTRSMLLSQGQF 158
Cdd:pfam13476 74 VEITFENNDGRYtyAIERSRELSKKKGKTKKKEILEIL-----------EIDELQQFISELLKSDKIILPLLVFLGQERE 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 486167328 159 AAFLNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARLELEKLQAQ 206
Cdd:pfam13476 143 EEFERKEKKERLEELEKALEEKEDEKKLLEKLLQLKEKKKELEELKEE 190
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
944-1030 |
2.44e-18 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 84.63 E-value: 2.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 944 RDTRTLSGGESFLVSLALAL--ALSDLVSHKTRIDSLFLDEGFGTLDSETLDAALDALDALNASGKTIGVISHVEAMKER 1021
Cdd:cd03279 119 RPVSTLSGGETFLASLSLALalSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKER 198
|
....*....
gi 486167328 1022 IPVQIKVKK 1030
Cdd:cd03279 199 IPQRLEVIK 207
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
409-876 |
7.17e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 7.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 409 QALAEARALHTRQRPLRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQYTQRLADKRLSYKTKAQELAdvrticEQEA 488
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA------ELEE 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 489 RIKDLESQRAHLQSGQpcplcgSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQLQRDESEAQ 568
Cdd:COG1196 331 ELEELEEELEELEEEL------EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 569 SLLQEEQALTEEWQTLCATLGVQLQPQEDLAgwlTAAEEHEQQLDQLSQRHALQTQIAAHTEQVARFTAQIAQRQASLTA 648
Cdd:COG1196 405 LEEAEEALLERLERLEEELEELEEALAELEE---EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 649 DLAQYtlslpAPENEASWLNERADEAKIWQQRQTEFADLQTQIDRLAPLLETLPQTDTADSDDDVPLDNWRQAHDECVSL 728
Cdd:COG1196 482 LLEEL-----AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDD 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 729 QSQLQTLQEQTTQEQQRATE---AIAHFDAALKNSPFDRQATFLAALLDEETVTRLEKQQQ-------------TLESQL 792
Cdd:COG1196 557 EVAAAAIEYLKAAKAGRATFlplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVlgdtllgrtlvaaRLEAAL 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 793 QQAKALSAQSAQALADHQQQPPAGLDPTCTAEQLAQRLAQLAQQLRENTTRQGEIRQQIKQDADNRQRQRALMAEMKQAS 872
Cdd:COG1196 637 RRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
....
gi 486167328 873 QQVE 876
Cdd:COG1196 717 LEEE 720
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
154-839 |
2.28e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 2.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 154 SQGQFAAFLNAKAKERAELLEELTGteiygqISaqvfeKHKS----ARLELEKLQAQASGVALLADE---QLQQLEAslQ 226
Cdd:COG1196 142 GQGMIDRIIEAKPEERRAIIEEAAG------IS-----KYKErkeeAERKLEATEENLERLEDILGElerQLEPLER--Q 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 227 ALTDEEKRLLASQQGQQQHLHWLTRKNELHTELHARQQALYAAQEAREKAQPQLAALTLAqpARQLRphwERIQEQTRAV 306
Cdd:COG1196 209 AEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAE--LEELR---LELEELELEL 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 307 ERVRQHSDEVNARLQsayRLRQRIRscahRQFTQLNATGQRLKTWLAEhdgIRVWRSELAGWRALLTQQSHDRAQLSQWQ 386
Cdd:COG1196 284 EEAQAEEYELLAELA---RLEQDIA----RLEERRRELEERLEELEEE---LAELEEELEELEEELEELEEELEEAEEEL 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 387 QQLLSDTRQRDALppltldlTPQALAEARALHTRQRPLRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQYTQRLADK 466
Cdd:COG1196 354 EEAEAELAEAEEA-------LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL 426
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 467 RLSYKTKAQELADVRTIcEQEARIKDLESQRAHLQsgqpcplcgstthpaiaayQALELSANQTRRDALEKEVKTLAEEG 546
Cdd:COG1196 427 EEALAELEEEEEEEEEA-LEEAAEEEAELEEEEEA-------------------LLELLAELLEEAALLEAALAELLEEL 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 547 AALRGQLDALTQQLQRDESEAQS--LLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRHALQtQ 624
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGvkAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIE-Y 565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 625 IAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAPENEASWLNERADEAK----IWQQRQTEFADLQTQIDRLAPLLET 700
Cdd:COG1196 566 LKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYvlgdTLLGRTLVAARLEAALRRAVTLAGR 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 701 LpqTDTADSDDDVPLDNWRQAHDECVSLQSQLQTLQEQTTQEQQRATEAIAHFDAALKNSPFDRQATFLAALLDEETVTR 780
Cdd:COG1196 646 L--REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE 723
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 486167328 781 LEKQQQTLESQLQQAKALSAQSAQALADHQQQPPAGLDPtctaEQLAQRLAQLAQQLRE 839
Cdd:COG1196 724 EALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL----EELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
154-877 |
5.48e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 5.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 154 SQGQFAAFLNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARLELEKLQAQASGVallaDEQLQQLEAslQALTDEEK 233
Cdd:TIGR02168 142 EQGKISEIIEAKPEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNEL----ERQLKSLER--QAEKAERY 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 234 RLLASQQGQQQHLHWLTRKNELHTELHARQQALYAAQEAREKAQPQLAALT--LAQPARQLRPHWERIQEQTRAVERVRQ 311
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEekLEELRLEVSELEEEIEELQKELYALAN 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 312 HSDEVNARLQsayRLRQRIRScAHRQFTQLNATGQRLKTWLAEHdgirvwRSELAGWRALLTQQSHDRAQLSQWQqqlls 391
Cdd:TIGR02168 296 EISRLEQQKQ---ILRERLAN-LERQLEELEAQLEELESKLDEL------AEELAELEEKLEELKEELESLEAEL----- 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 392 dTRQRDALPPLTldltpQALAEARALHTRQRP----LRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQYTQRLADKR 467
Cdd:TIGR02168 361 -EELEAELEELE-----SRLEELEEQLETLRSkvaqLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 468 L-----SYKTKAQELADVRTicEQEARIKDLESQRAHLQSGQPCPLCGSTTHPAIAAYQALeLSANQTRRDALEKEVKTL 542
Cdd:TIGR02168 435 LkelqaELEELEEELEELQE--ELERLEEALEELREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEGVKAL 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 543 AEEGAALRGQLDALTQQLQRDESEAQSLlqeEQALTEEWQTLC------ATLGVQLQPQEDLAGWLTAAeeheqqLDQLS 616
Cdd:TIGR02168 512 LKNQSGLSGILGVLSELISVDEGYEAAI---EAALGGRLQAVVvenlnaAKKAIAFLKQNELGRVTFLP------LDSIK 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 617 QRH--ALQTQIAAHTEQVARFTAQIAQRQASLTADLaQYTLSLPAP-ENEASWLNERADEAKIW---------------- 677
Cdd:TIGR02168 583 GTEiqGNDREILKNIEGFLGVAKDLVKFDPKLRKAL-SYLLGGVLVvDDLDNALELAKKLRPGYrivtldgdlvrpggvi 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 678 -----------QQRQTEFADLQTQIDRLAPLLE----TLPQTDTADSDDDVPLDNWRQAHDECVSLQSQLQTLQEQTTQE 742
Cdd:TIGR02168 662 tggsaktnssiLERRREIEELEEKIEELEEKIAelekALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 743 QQRATEAIAHFDAALKNspFDRQATFLAALLDE------ETVTRLEKQQQTLESQLQQAKALSAQSAQALADHQQQPPAG 816
Cdd:TIGR02168 742 VEQLEERIAQLSKELTE--LEAEIEELEERLEEaeeelaEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 486167328 817 LDPTCTAEQLAQRLAQLAQQLRENTTRQGEIRQQIKQDADNRQRQRALMAEMKQASQQVED 877
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN 880
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
162-694 |
1.02e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 1.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 162 LNAKAKERAELLEELTGTEiyGQISAQVfEKHKSARLELEKLQAQASGVALLADEQLQQLEASLQALTDEEKRLLAS-QQ 240
Cdd:COG1196 244 LEAELEELEAELEELEAEL--AELEAEL-EELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERlEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 241 GQQQHLHWLTRKNELHTELHARQQALYAAQEAREKAQPQLAALTLAQPA---------RQLRPHWERIQEQTRAVERVRQ 311
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEaeaelaeaeEELEELAEELLEALRAAAELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 312 HSDEVNARLQSAYRLRQRIRSCAHRQFTQLNATGQRLKTWLAEHDGIRVWRSELAGWRALLTQQSHDRAQLSQWQQQLLS 391
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 392 DTRQR--DALPPLTLDLTPQALAE-----ARALHTRQRPLRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQYTQRLA 464
Cdd:COG1196 481 ELLEElaEAAARLLLLLEAEADYEgflegVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAA 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 465 DKRLSYKTKAQELADVrticEQEARIKDLESQRAHLQSGQPCPLcgstthpAIAAYQALELSANQTRRDALEKEVKTLAE 544
Cdd:COG1196 561 AAIEYLKAAKAGRATF----LPLDKIRARAALAAALARGAIGAA-------VDLVASDLREADARYYVLGDTLLGRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 545 EGAALRGQLDALTQQLQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRHALQTQ 624
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 625 IAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAPENEASWLNERADEAKIWQQRQTEFADLQTQIDRL 694
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
427-990 |
1.12e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 62.48 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 427 RLAALQGQIVPKQKRQAQLQAAIarhhQEQAQYTQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAHLQSGQPC 506
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQ----EELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 507 PlcgstthpAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALT-QQLQRDESEAQSLLQEEQALTEEWQTLC 585
Cdd:COG4717 148 L--------EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATeEELQDLAEELEELQQRLAELEEELEEAQ 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 586 ATLGVQLQPQEDLAGWLTAAEEhEQQLDQLSQRHALQTQIAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAPENEAS 665
Cdd:COG4717 220 EELEELEEELEQLENELEAAAL-EERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 666 WLNERADEAKIWQQRQTEFADLQTQIDRLAPLLETLPQTDTADSDDDVplDNWRQAHDECVSLQSQLQTLqeqttqeqqr 745
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRI--EELQELLREAEELEEELQLE---------- 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 746 atEAIAHFDAALKNSPFDRQATFLAALLDEETVTRLEKQQQTLESQLQQAKALSAQSAQALADHQQQPpagldptcTAEQ 825
Cdd:COG4717 367 --ELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEE--------ELEE 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 826 LAQRLAQLAQQLRENTTRQGEIRQQIKQ------DADNRQRQRALMAEMKQAsqqVEDWGYLNalIGSKEGDKFRKFAQG 899
Cdd:COG4717 437 LEEELEELEEELEELREELAELEAELEQleedgeLAELLQELEELKAELREL---AEEWAALK--LALELLEEAREEYRE 511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 900 LTLDNLVWLANHQLTRL-HGRYLLQRkASDALELEVVDtwQADAVRDTRTLSGGE----------SFLVslalalalsdl 968
Cdd:COG4717 512 ERLPPVLERASEYFSRLtDGRYRLIR-IDEDLSLKVDT--EDGRTRPVEELSRGTreqlylalrlALAE----------- 577
|
570 580
....*....|....*....|..
gi 486167328 969 vSHKTRIDSLFLDEGFGTLDSE 990
Cdd:COG4717 578 -LLAGEPLPLILDDAFVNFDDE 598
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1-260 |
4.45e-09 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 60.69 E-value: 4.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 1 MKILSLRLKNLNSLKgewkvdfTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPrlntvSQSQNDLMTRDTAECL 80
Cdd:PRK01156 1 MIIKRIRLKNFLSHD-------DSEIEFDTGINIITGKNGAGKSSIVDAIRFALFTDKR-----TEKIEDMIKKGKNNLE 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 81 AEVEFEVKGETWRAFWSQNRARNQPDGNLQAPRvelarcsDGKIFADKVKDKLEMI-ATLTGLDYGRFTRSMLLSQGQFA 159
Cdd:PRK01156 69 VELEFRIGGHVYQIRRSIERRGKGSRREAYIKK-------DGSIIAEGFDDTTKYIeKNILGISKDVFLNSIFVGQGEMD 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 160 AFLNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARLEL-------EKLQAQASGVALLaDEQLQQLEASLQALTDEE 232
Cdd:PRK01156 142 SLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEIsnidyleEKLKSSNLELENI-KKQIADDEKSHSITLKEI 220
|
250 260
....*....|....*....|....*...
gi 486167328 233 KRLLASQQGQQQhlhwltRKNELHTELH 260
Cdd:PRK01156 221 ERLSIEYNNAMD------DYNNLKSALN 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
162-695 |
5.19e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 5.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 162 LNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARL--ELEKLQAQASGvallADEQLQQLEASLQALTDEEKRLLASQ 239
Cdd:COG4913 257 IRELAERYAAARERLAELEYLRAALRLWFAQRRLELLeaELEELRAELAR----LEAELERLEARLDALREELDELEAQI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 240 QGQQqhlhwLTRKNELHTELHARQQALYAAQEAREKAQPQLAALTLAQP------ARQLRPHWERIQEQTRAVERVRQHS 313
Cdd:COG4913 333 RGNG-----GDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPasaeefAALRAEAAALLEALEEELEALEEAL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 314 DEVNARLQSAYR----LRQRIRSCAHRQFTqLNATGQRLKTWLAEHDGIRvwRSEL-------------AGWRALLTQQS 376
Cdd:COG4913 408 AEAEAALRDLRRelreLEAEIASLERRKSN-IPARLLALRDALAEALGLD--EAELpfvgelievrpeeERWRGAIERVL 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 377 HDRAqlsqwqqqllsdtrqrdalppLTLDLTPQALAEARAlHTRQRPLRHRlaaLQGQIVPKQKRQAQLQAA-------- 448
Cdd:COG4913 485 GGFA---------------------LTLLVPPEHYAAALR-WVNRLHLRGR---LVYERVRTGLPDPERPRLdpdslagk 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 449 --IARHhqEQAQYTQRLADKRLSYK--TKAQELADVRTICEQEARIKDLESQRAHLQSGQPC--PLCGSTTHPAIAAYQA 522
Cdd:COG4913 540 ldFKPH--PFRAWLEAELGRRFDYVcvDSPEELRRHPRAITRAGQVKGNGTRHEKDDRRRIRsrYVLGFDNRAKLAALEA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 523 lELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQLQRDESE--AQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAG 600
Cdd:COG4913 618 -ELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidVASAEREIAELEAELERLDASSDDLAALEEQLEE 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 601 WLTAAEEHEQQLDQLSQRHA-LQTQIAAHTEQVARFTAQIAQRQASLTADLAQYtlslpapeneaswLNERADEAKIWQQ 679
Cdd:COG4913 697 LEAELEELEEELDELKGEIGrLEKELEQAEEELDELQDRLEAAEDLARLELRAL-------------LEERFAAALGDAV 763
|
570
....*....|....*.
gi 486167328 680 RQTEFADLQTQIDRLA 695
Cdd:COG4913 764 ERELRENLEERIDALR 779
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
6-271 |
6.87e-09 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 59.64 E-value: 6.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 6 LRLKNLNSLKGEW-KVDFTAepFASNglfAITGPTGAGKTTLLDAICLALYHETPRLNTVSQSQNDLMTRDtaeCLAEVE 84
Cdd:PHA02562 7 IRYKNILSVGNQPiEIQLDK--VKKT---LITGKNGAGKSTMLEALTFALFGKPFRDIKKGQLINSINKKD---LLVELW 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 85 FEVKGETWRAFwsqnRArnqpdgnlQAPRVELARCSDGKIFAD-KVKDKLEMIATLTGLDYGRFTRSMLLSQGQFAAFLN 163
Cdd:PHA02562 79 FEYGEKEYYIK----RG--------IKPNVFEIYCNGKLLDESaSSKDFQKYFEQMLGMNYKSFKQIVVLGTAGYVPFMQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 164 AKAKERAELLEELTGTEIYGQISAQVFEKHKSARLELEKLQAQASgvalLADEQL---QQLEASLQALTDEEkrllasqq 240
Cdd:PHA02562 147 LSAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKID----HIQQQIktyNKNIEEQRKKNGEN-------- 214
|
250 260 270
....*....|....*....|....*....|.
gi 486167328 241 gqqqhlhwLTRKNELHTELHARQQALYAAQE 271
Cdd:PHA02562 215 --------IARKQNKYDELVEEAKTIKAEIE 237
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
524-954 |
1.12e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 524 ELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQLQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGwlT 603
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE--R 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 604 AAEEHEQQLDQLSQRHALQTQIAAHTEQVARFTAQIAQRQASLTADLAQYTLSLpapENEASWLNERADEAKIWQQRQTE 683
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE---AELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 684 FADLQTQIDRLAPLLETLPQTDTADsdddvpLDNWRQAHDECVSLQSQLQTLQEQTTQEQQRATEAIAHFDAALKNSPFD 763
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERL------EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 764 RQATFLAALLDEETVTRLEKQQQTLESQLQQAKALSAQSAQALADHQQQPPAGL---------DPTCTAEQLAQRLAQLA 834
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagavavligVEAAYEAALEAALAAAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 835 QQ-LRENTTRQGEIRQQIKQDADNR------QRQRALMAEMKQASQQVEDWGYLNALIGSKEGDKFRKFAQGLTLDNLVW 907
Cdd:COG1196 549 QNiVVEDDEVAAAAIEYLKAAKAGRatflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 486167328 908 LANHQLTRLHGRYLLQRKASDALELEVVDTWQADAVRDTRTLSGGES 954
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
3-91 |
3.37e-08 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 54.92 E-value: 3.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 3 ILSLRLKNLNSLKGEWKVDFTaepfasNGLFAITGPTGAGKTTLLDAICLALYHETPRLNTVSQSQNDlMTRDTAEcLAE 82
Cdd:cd03240 1 IDKLSIRNIRSFHERSEIEFF------SPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPK-LIREGEV-RAQ 72
|
....*....
gi 486167328 83 VEFEVKGET 91
Cdd:cd03240 73 VKLAFENAN 81
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3-573 |
1.15e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 3 ILSLRLKNLNSLKGEWKVDFtaepfaSNGLFAITGPTGAGKTTLLDAICLALYHETPR-------LNTVSQSQNDlmtRD 75
Cdd:TIGR02169 2 IERIELENFKSFGKKKVIPF------SKGFTVISGPNGSGKSNIGDAILFALGLSSSKamraerlSDLISNGKNG---QS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 76 TAECLAEVEFEVKGETWRAFWS-QNRARNQPDGNLQAPRVELARCSDGKIfadkvKDKLemiaTLTGLDYGRFTRSMlls 154
Cdd:TIGR02169 73 GNEAYVTVTFKNDDGKFPDELEvVRRLKVTDDGKYSYYYLNGQRVRLSEI-----HDFL----AAAGIYPEGYNVVL--- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 155 QGQFAAFLNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARLELEKLQaqasgvaLLADEQLQQLEaSLQALTDEEKR 234
Cdd:TIGR02169 141 QGDVTDFISMSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLD-------LIIDEKRQQLE-RLRREREKAER 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 235 LLASQQGQQQHLHW--LTRKNELHTELHARQQALYAAQEAREKAQPQLAAL--TLAQPARQLRPHWERIQ-----EQTRA 305
Cdd:TIGR02169 213 YQALLKEKREYEGYelLKEKEALERQKEAIERQLASLEEELEKLTEEISELekRLEEIEQLLEELNKKIKdlgeeEQLRV 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 306 VERVRQHSDEVnARLQSAYRLRQRIRSCAHRQFTQLNATGQRLKtwlAEHDGIrvwRSELAGWRALLTQQSHDRAQLSQW 385
Cdd:TIGR02169 293 KEKIGELEAEI-ASLERSIAEKERELEDAEERLAKLEAEIDKLL---AEIEEL---EREIEEERKRRDKLTEEYAELKEE 365
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 386 QQQLLSDTRQRDALPPLTLDLTPQALAEARALHTRQRPLRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQYTQRLAD 465
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 466 KRLSYKTKAQELadvrticeqEARIKDLESQRAhlqsgqpcplcgstthpaiaayqalELSANQTRRDALEKEVKTLAEE 545
Cdd:TIGR02169 446 KALEIKKQEWKL---------EQLAADLSKYEQ-------------------------ELYDLKEEYDRVEKELSKLQRE 491
|
570 580
....*....|....*....|....*...
gi 486167328 546 GAALRGQLDALtQQLQRDESEAQSLLQE 573
Cdd:TIGR02169 492 LAEAEAQARAS-EERVRGGRAVEEVLKA 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
155-572 |
1.24e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 155 QGQFAAFLNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARLELEKLQAQASGVALLADEQLQQLEASLQALTDEEKR 234
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 235 LLASQQGQQQHLHWLTRKNELHTELHARQQALYAAQEAREKAQPQ--------LAALTLAQPAR-----QLRPHWERIQE 301
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyegflegvKAALLLAGLRGlagavAVLIGVEAAYE 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 302 QTRAVERVRQHSDEVNARLQSAYRLRQRIRSCAHRQFTQLNATGQRLKTWLAEHDGIRVWRSELAGWRALLTQQSHDRAQ 381
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 382 LSQWQQQLLSDTRQRDA---LPPLTLDLTPQALAEARALHTRQRPLRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQ 458
Cdd:COG1196 618 LGDTLLGRTLVAARLEAalrRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 459 YTQRLADKRLsyKTKAQELADVRTICEQEARIKDLESQRAHLQSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKE 538
Cdd:COG1196 698 ALLAEEEEER--ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 486167328 539 VKTL-------AEEGAALRGQLDALTQQLQRDESEAQSLLQ 572
Cdd:COG1196 776 IEALgpvnllaIEEYEELEERYDFLSEQREDLEEARETLEE 816
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
191-625 |
3.22e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.96 E-value: 3.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 191 EKHKSARLELEKLQAQASGVALLADEQ--LQQLEASLQALTDEEKRLLASQQGQQQHLhwltrknelhtelhARQQALYA 268
Cdd:COG3096 279 ERRELSERALELRRELFGARRQLAEEQyrLVEMARELEELSARESDLEQDYQAASDHL--------------NLVQTALR 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 269 AQEAREKAQPQLAALTlaqparqlrphwERIQEQTRAVERVRQHSDEVNARLQSAYrlrqrirscahrqftqlnatgqrl 348
Cdd:COG3096 345 QQEKIERYQEDLEELT------------ERLEEQEEVVEEAAEQLAEAEARLEAAE------------------------ 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 349 ktwlAEHDGIRvwrSELAGW-RALLTQQShdRAQLSQWQQQLLSDTRQRDALPPLTLDLTPQALAEARA----LHTRQRP 423
Cdd:COG3096 389 ----EEVDSLK---SQLADYqQALDVQQT--RAIQYQQAVQALEKARALCGLPDLTPENAEDYLAAFRAkeqqATEEVLE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 424 LRHRLA-------------ALQGQIVPKQKRQAQLQAAIA--RHHQEQAQYTQRLADKRlsyktkaQELADVRTICEQEA 488
Cdd:COG3096 460 LEQKLSvadaarrqfekayELVCKIAGEVERSQAWQTAREllRRYRSQQALAQRLQQLR-------AQLAELEQRLRQQQ 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 489 RIKDLESQRAHLQSGQpcplcgstthpaIAAYQALE--LSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQLQRDESE 566
Cdd:COG3096 533 NAERLLEEFCQRIGQQ------------LDAAEELEelLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAAR 600
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 486167328 567 AQSLLQEEQALTeewqTLCATLGVQLQPQEDLAGWLTAAEEHEQQL----DQLSQR-HALQTQI 625
Cdd:COG3096 601 APAWLAAQDALE----RLREQSGEALADSQEVTAAMQQLLEREREAtverDELAARkQALESQI 660
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
26-68 |
1.64e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 46.20 E-value: 1.64e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 486167328 26 PFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNTVSQSQ 68
Cdd:cd03227 17 TFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVK 59
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
26-50 |
2.15e-05 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 42.97 E-value: 2.15e-05
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
167-588 |
2.40e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 167 KERAELLEELTGTEIYGQISAQVFEKHKSARLELEKLQAQASgvalLADEQLQQLEASLQALTD--EEKRLLASQQGQQQ 244
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELE----ELREELEKLEKLLQLLPLyqELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 245 HLHWLTRKNELHTELHARQQALYAAQEAREKAQPQLAALTLAQPARQLRPHWERIQEQTRAVERVRQHSDEVNARLQSA- 323
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELe 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 324 --------YRLRQRIRSCAHRQFTQLNATGQRLkTWLAEHDGIRVWRSELAGWRALLTQQSHDRAQLSQWQQQLLSDTRQ 395
Cdd:COG4717 227 eeleqlenELEAAALEERLKEARLLLLIAAALL-ALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 396 RDALPPLTLDLTPQALAE-ARALHTRQRPLRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQYTQrladKRLSYKTKA 474
Cdd:COG4717 306 ELQALPALEELEEEELEElLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEI----AALLAEAGV 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 475 QELADVRTICEQEARIKDLESQRAHLQS--GQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQ 552
Cdd:COG4717 382 EDEEELRAALEQAEEYQELKEELEELEEqlEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAE 461
|
410 420 430
....*....|....*....|....*....|....*...
gi 486167328 553 LDAL--TQQLQRDESEAQSLLQEEQALTEEWQTLCATL 588
Cdd:COG4717 462 LEQLeeDGELAELLQELEELKAELRELAEEWAALKLAL 499
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
190-589 |
2.94e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.41 E-value: 2.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 190 FEKHKSARLELEKLQAQ---ASGVALLADEQLQQLEASLQALTDEEKRLlASQQGQQQhlhwlTRKNELHTELHARQQAL 266
Cdd:PRK04863 347 QEKIERYQADLEELEERleeQNEVVEEADEQQEENEARAEAAEEEVDEL-KSQLADYQ-----QALDVQQTRAIQYQQAV 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 267 YAAQEAREkaQPQLAALTLAQPA---RQLRPHWERIQEQTRAVERVRQHSDEVNARLQSAYRLRQRI-----RSCAHRQF 338
Cdd:PRK04863 421 QALERAKQ--LCGLPDLTADNAEdwlEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIagevsRSEAWDVA 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 339 TQLnatgqrlktwlaehdgIRVWRSelagWRALLTQqshdraqlsqwqqqllsdtrqrdaLPPLTldltpQALAEARALH 418
Cdd:PRK04863 499 REL----------------LRRLRE----QRHLAEQ------------------------LQQLR-----MRLSELEQRL 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 419 TRQRPLRHRLAALQgqivpkQKRQAQLQAAiarhhQEQAQYTQRLADKRLSYKTKAQELADVRTicEQEARIKDLESQRA 498
Cdd:PRK04863 530 RQQQRAERLLAEFC------KRLGKNLDDE-----DELEQLQEELEARLESLSESVSEARERRM--ALRQQLEQLQARIQ 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 499 HLQSGQPCPLcgsTTHPAIAAYQAlELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQLQRDESEAQSLLQEEQALT 578
Cdd:PRK04863 597 RLAARAPAWL---AAQDALARLRE-QSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSED 672
|
410
....*....|.
gi 486167328 579 EEWQTLCATLG 589
Cdd:PRK04863 673 PRLNALAERFG 683
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
410-657 |
5.80e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 5.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 410 ALAEARALHTRQRPLRHRLAALQGQIVPKQKRQAQLQaaiarhhQEQAQYTQRLADKRLSYKTKAQELADVRT-ICEQEA 488
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE-------QEEEKLKERLEELEEDLSSLEQEIENVKSeLKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 489 RIKDLESQRAHLQsgqpcplcgstthpaiAAYQALELSANQTR-------RDALEKEVKTLAEEGAALRGQLDALTQQLQ 561
Cdd:TIGR02169 766 RIEELEEDLHKLE----------------EALNDLEARLSHSRipeiqaeLSKLEEEVSRIEARLREIEQKLNRLTLEKE 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 562 RDESEAQSLLQEEQALTEEWQTLCATLGvqlQPQEDLAGWLTAAEEHEQQLDQLSQRHA-LQTQIAAHTEQVARftAQIA 640
Cdd:TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEKEIE---NLNGKKEELEEELEELEAALRDLESRLGdLKKERDELEAQLRE--LERK 904
|
250
....*....|....*..
gi 486167328 641 QRQASLTADLAQYTLSL 657
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSE 921
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
250-584 |
5.94e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.25 E-value: 5.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 250 TRKNELHTELHARQQALYAAQEAREKAQPQLAALtlaqpaRQLRPHWERIQEQTRAvERVrqhsDEVNARLQSAYRLRQR 329
Cdd:COG3096 843 QRRSELERELAQHRAQEQQLRQQLDQLKEQLQLL------NKLLPQANLLADETLA-DRL----EELREELDAAQEAQAF 911
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 330 IRSCAhRQFTQLNATGQRLKTWLAEHDGIrvwrselagwrALLTQQSHDRAQLSQWQQQLLSDTRQRdaLPPLTLDLTPQ 409
Cdd:COG3096 912 IQQHG-KALAQLEPLVAVLQSDPEQFEQL-----------QADYLQAKEQQRRLKQQIFALSEVVQR--RPHFSYEDAVG 977
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 410 ALAEARALHTRqrpLRHRLAALQgqivpKQKRQAQLQAaiaRHHQEQ-AQYTQRLADKRLSYKTKAQELAdvrticEQEA 488
Cdd:COG3096 978 LLGENSDLNEK---LRARLEQAE-----EARREAREQL---RQAQAQySQYNQVLASLKSSRDAKQQTLQ------ELEQ 1040
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 489 RIKDLESQRahlqsgqpcplcgstthPAIAAYQAlelsanQTRRDALEKEVktlaeegAALRGQLDALTQQLQRDESEAQ 568
Cdd:COG3096 1041 ELEELGVQA-----------------DAEAEERA------RIRRDELHEEL-------SQNRSRRSQLEKQLTRCEAEMD 1090
|
330
....*....|....*.
gi 486167328 569 SLLQEEQALTEEWQTL 584
Cdd:COG3096 1091 SLQKRLRKAERDYKQE 1106
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
1-55 |
6.07e-05 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 44.54 E-value: 6.07e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 486167328 1 MKILSLRLKNLNSLKGewkVDFTAEPfasNGLFAITGPTGAGKTTLLDAICLALY 55
Cdd:cd00267 2 IENLSFRYGGRTALDN---VSLTLKA---GEIVALVGPNGSGKSTLLRAIAGLLK 50
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
191-877 |
7.66e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 7.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 191 EKHKSARLELEKLQ---AQASGVALLADEQLQQLEASLQALTDEEKRLLASQQGQQQHLhwltrkNELHTELHARQQALY 267
Cdd:COG3096 347 EKIERYQEDLEELTerlEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL------DVQQTRAIQYQQAVQ 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 268 AAQEAREkaQPQLAALTLAQPARQLRPHWERIQEQTRAVERVRQH---SDEVNARLQSAYRLRQRI-----RSCAHRQFT 339
Cdd:COG3096 421 ALEKARA--LCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKlsvADAARRQFEKAYELVCKIageveRSQAWQTAR 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 340 QLNATGQRLKTWLAEHDGIRvwrSELAGWRALLTQQSHDRAQLSQWQQQLLSDTRQRDALPPLTLDLTPQ---ALAEARA 416
Cdd:COG3096 499 ELLRRYRSQQALAQRLQQLR---AQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQleeLEEQAAE 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 417 LHTRQRPLRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQYTQRLADKRLSYKTKAQELADVRticEQEARIKDLESQ 496
Cdd:COG3096 576 AVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLERER---EATVERDELAAR 652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 497 RAHLQSgqpcplcgstthpaiaayQALELSANQTRRDAlekEVKTLAE-------------------------------- 544
Cdd:COG3096 653 KQALES------------------QIERLSQPGGAEDP---RLLALAErlggvllseiyddvtledapyfsalygparha 711
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 545 ----EGAALRGQLDALTQQL------QRDES--EAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGwlTAAEEheQQL 612
Cdd:COG3096 712 ivvpDLSAVKEQLAGLEDCPedlyliEGDPDsfDDSVFDAEELEDAVVVKLSDRQWRYSRFPEVPLFG--RAARE--KRL 787
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 613 DQLS-QRHALQTQIAAhteqvARFTAQIAQRQ-ASLTADLAQYtLSL---PAPENEASWLNERADEA--KIWQQRQTEfA 685
Cdd:COG3096 788 EELRaERDELAEQYAK-----ASFDVQKLQRLhQAFSQFVGGH-LAVafaPDPEAELAALRQRRSELerELAQHRAQE-Q 860
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 686 DLQTQIDRLAPLLETL----PQTDTADSDDdvpldnwrqahdecvslqsqlqtlqeqttqEQQRATEAIAHFDAALKNSP 761
Cdd:COG3096 861 QLRQQLDQLKEQLQLLnkllPQANLLADET------------------------------LADRLEELREELDAAQEAQA 910
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 762 FDRQatflaallDEETVTRLEKQQQTLESQLQQAKALSAQSAQALADHQQqppagLDPTCTA-EQLAQRLAQLA-----Q 835
Cdd:COG3096 911 FIQQ--------HGKALAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRR-----LKQQIFAlSEVVQRRPHFSyedavG 977
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 486167328 836 QLRENTTRQGEIRQQIKQDADNRQRQRalmAEMKQASQQVED 877
Cdd:COG3096 978 LLGENSDLNEKLRARLEQAEEARREAR---EQLRQAQAQYSQ 1016
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
89-348 |
1.51e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 89 GETWRAFWSQNRARNQPDGNLQAPRVELARCS-----------DGKIFADKVKDKLEMIATLT------GLDYGRFTRSM 151
Cdd:TIGR02168 652 GDLVRPGGVITGGSAKTNSSILERRREIEELEekieeleekiaELEKALAELRKELEELEEELeqlrkeLEELSRQISAL 731
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 152 LLSQGQFAAFLNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARLELEKLQAQASGVALLADEQLQQLEASLQALTDE 231
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 232 EKRLLASQQGQQQHLHWLT-RKNELHTELHARQQALYAAQEAREKAQPQLAALTLAQPA--RQLRPHWERIQEQTRAVER 308
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLErRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEleSELEALLNERASLEEALAL 891
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 486167328 309 VRQHSDEVNARLQSAYRLRQRIRSCAHRQFTQLNATGQRL 348
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
162-876 |
1.85e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 162 LNAKAKERAELLEELTGTEiygqisaQVFEKHKSARLELEKLQAQASGVALLADEQLQQLEASLQALTDEEKRLLASQ-Q 240
Cdd:TIGR02168 248 LKEAEEELEELTAELQELE-------EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLeE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 241 GQQQHLHWLTRKNELHTELHARQQALYAAQEAREKAQPQLAALTLAQPARQlrphwERIQEQTRAVERVRqhsDEVNARL 320
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE-----SRLEELEEQLETLR---SKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 321 QSAYRLRQRIRScAHRQFTQLNATGQRLKTWLAEHDG--IRVWRSELAGWRALLTQQSHDRAQLSQWQQQLLSDTRQRDA 398
Cdd:TIGR02168 393 LQIASLNNEIER-LEARLERLEDRRERLQQEIEELLKklEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 399 LPPLTLDLTPQALAEARA----LHTRQRPL-------------RHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQY-- 459
Cdd:TIGR02168 472 EAEQALDAAERELAQLQArldsLERLQENLegfsegvkallknQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAvv 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 460 TQRLADKRLSYKTKAQELADVRTICE---------QEARIKDLESQRAHLQSGQPCPLCGSTTHPAIAAY---------- 520
Cdd:TIGR02168 552 VENLNAAKKAIAFLKQNELGRVTFLPldsikgteiQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvddl 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 521 -QALELsANQTRRDAL--EKEVKTLAEEGAALRGQLDALTQQLQRdESEAQSLLQEEQALTEEWQTLCATLGVQLQPQED 597
Cdd:TIGR02168 632 dNALEL-AKKLRPGYRivTLDGDLVRPGGVITGGSAKTNSSILER-RREIEELEEKIEELEEKIAELEKALAELRKELEE 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 598 LAGWLTAAEEHEQQLDQLSqrHALQTQIAAHTEQVARFTAQIAQRQASLTaDLAQYTLSLPAPENEASWLNERADEakiw 677
Cdd:TIGR02168 710 LEEELEQLRKELEELSRQI--SALRKDLARLEAEVEQLEERIAQLSKELT-ELEAEIEELEERLEEAEEELAEAEA---- 782
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 678 qqrqtEFADLQTQIDRLAPLLETLPQTdtadsdddvpLDNWRQAHDEcvsLQSQLQTLQEQTTQEQQRATEAIAHFDAAL 757
Cdd:TIGR02168 783 -----EIEELEAQIEQLKEELKALREA----------LDELRAELTL---LNEEAANLRERLESLERRIAATERRLEDLE 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 758 KNSpfdRQATFLAALLDEEtVTRLEKQQQTLESQLQQAKALSAQSAQALAdhqqqppagldptctaeQLAQRLAQLAQQL 837
Cdd:TIGR02168 845 EQI---EELSEDIESLAAE-IEELEELIEELESELEALLNERASLEEALA-----------------LLRSELEELSEEL 903
|
730 740 750
....*....|....*....|....*....|....*....
gi 486167328 838 RENTTRQGEIRQQikqdadnRQRQRALMAEMKQASQQVE 876
Cdd:TIGR02168 904 RELESKRSELRRE-------LEELREKLAQLELRLEGLE 935
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1-618 |
2.31e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 1 MKILSLRLKNLNSLKgewKVDFTAEPfasnGLFAITGPTGAGKTTLLDAICLALYHETprlnTVSQSQNDLMTRDTAECL 80
Cdd:PRK02224 1 MRFDRVRLENFKCYA---DADLRLED----GVTVIHGVNGSGKSSLLEACFFALYGSK----ALDDTLDDVITIGAEEAE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 81 AEVEFEVKGETWRAfwsQNRARNQPDgnlqapRVELARC--SDGKIFADKVKDKLEMIATLTGLDYGRFTRSMLLSQGQF 158
Cdd:PRK02224 70 IELWFEHAGGEYHI---ERRVRLSGD------RATTAKCvlETPEGTIDGARDVREEVTELLRMDAEAFVNCAYVRQGEV 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 159 AAFLNAKAKERAELLE---ELTGTEIYGqisaqvfEKHKSARLELEKLQAQASGVALLADEQLQQ------------LEA 223
Cdd:PRK02224 141 NKLINATPSDRQDMIDdllQLGKLEEYR-------ERASDARLGVERVLSDQRGSLDQLKAQIEEkeekdlherlngLES 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 224 SLQALTDEEKRLLASQQGQQQHLHWLTRKNELHTElhaRQQALYAAQEAREKAQPQLAAL-----TLAQPARQLRPHWER 298
Cdd:PRK02224 214 ELAELDEEIERYEEQREQARETRDEADEVLEEHEE---RREELETLEAEIEDLRETIAETerereELAEEVRDLRERLEE 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 299 IQEQTRAV-----------ERVRQHSDEVNARLQSayrLRQRIRSCAHRQfTQLNATGQRLKTWLAEHD----GIRVWRS 363
Cdd:PRK02224 291 LEEERDDLlaeaglddadaEAVEARREELEDRDEE---LRDRLEECRVAA-QAHNEEAESLREDADDLEeraeELREEAA 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 364 ELAGWRALLTQQSHDRAQLSQWQQQLLSDTRQRDALPPLTLDLTPQALAEARALHTRqrpLRHRLAALQGQIVPKQKRQA 443
Cdd:PRK02224 367 ELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDE---LREREAELEATLRTARERVE 443
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 444 QLQA---------------------AIARHHQEQAQYTQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAHLQS 502
Cdd:PRK02224 444 EAEAlleagkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEE 523
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 503 gqpcplcgstthpaIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQLQRDESEAQSLLQEEQALTEEWQ 582
Cdd:PRK02224 524 --------------LIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589
|
650 660 670
....*....|....*....|....*....|....*.
gi 486167328 583 TLcatlgvqlqpqEDLAGWLTAAEEHEQQLDQLSQR 618
Cdd:PRK02224 590 SL-----------ERIRTLLAAIADAEDEIERLREK 614
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
412-592 |
3.98e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 412 AEARALHTRQRPLRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQYTQRLADKRLSYKTKAQELADVRTICEQEARIK 491
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 492 DLESQRAHLQSgqpcplcgstthpaiAAYQALELsanQTRRDALEKEVKTLAEEGAALRGQLDALTQQLQRDESEAQsll 571
Cdd:COG1579 97 EIESLKRRISD---------------LEDEILEL---MERIEELEEELAELEAELAELEAELEEKKAELDEELAELE--- 155
|
170 180
....*....|....*....|.
gi 486167328 572 QEEQALTEEWQTLCATLGVQL 592
Cdd:COG1579 156 AELEELEAEREELAAKIPPEL 176
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1-235 |
4.19e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 1 MKILSLRLKNLNSLKgEWKVDFTaepfasNGLFAITGPTGAGKTTLLDAICLALYHETPrLNTVSQSQNDLMTRDTAECL 80
Cdd:PRK03918 1 MKIEELKIKNFRSHK-SSVVEFD------DGINLIIGQNGSGKSSILEAILVGLYWGHG-SKPKGLKKDDFTRIGGSGTE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 81 AEVEFEVKGETWRAFWSQNRArnqpdgnlqaprVELARCSDG-KIFADKVKDKLEMIATLtgLDYGRFTRSMLLSQGQFA 159
Cdd:PRK03918 73 IELKFEKNGRKYRIVRSFNRG------------ESYLKYLDGsEVLEEGDSSVREWVERL--IPYHVFLNAIYIRQGEID 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 486167328 160 AFLNAKaKERAELLEELTGTEIYGQI---SAQVFEKHKSARLELEKLQAQASGVALLADEQLQQLEASLQALTDEEKRL 235
Cdd:PRK03918 139 AILESD-ESREKVVRQILGLDDYENAyknLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSEL 216
|
|
| ABC_SMC_head |
cd03239 |
The SMC head domain belongs to the ATP-binding cassette superfamily; The structural ... |
3-54 |
5.64e-04 |
|
The SMC head domain belongs to the ATP-binding cassette superfamily; The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Pssm-ID: 213206 [Multi-domain] Cd Length: 178 Bit Score: 41.91 E-value: 5.64e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 486167328 3 ILSLRLKNLNSLKGEWKVDFtaepfaSNGLFAITGPTGAGKTTLLDAICLAL 54
Cdd:cd03239 1 IKQITLKNFKSYRDETVVGG------SNSFNAIVGPNGSGKSNIVDAICFVL 46
|
|
| PksD |
COG3321 |
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ... |
393-886 |
8.46e-04 |
|
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442550 [Multi-domain] Cd Length: 1386 Bit Score: 43.71 E-value: 8.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 393 TRQRDALP----------------PLTLDLTPQALAEARALHTRQRPLRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQ 456
Cdd:COG3321 857 GRRRVPLPtypfqredaaaallaaALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVALA 936
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 457 AQYTQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAHLQSGQPCPLCGSTT-HPAIAAYQALELSANQTRRDAL 535
Cdd:COG3321 937 AAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAaALAAAAALALLAAAALLLAAAA 1016
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 536 EKEVKTLAEEGAALRGQLDALTQQLQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQL 615
Cdd:COG3321 1017 AAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAALA 1096
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 616 SQRHALQTQIAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAPENEASWLNERADEAKIWQQRQTEFADLQTQIDRLA 695
Cdd:COG3321 1097 LALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLLA 1176
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 696 PLLETLPQTDTADSDDDVPLDNWRQAHDECVSLQSQLQTLQEQTTQEQQRATEAIAHFDAALKNSPFDRQATFLAALLDE 775
Cdd:COG3321 1177 LALALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAALAAAAAALL 1256
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 776 ETVTRLEKQQQTLESQLQQAKALSAQSAQALADHQQQPPAGLDPTCTAEQLAQRLAQLAQQLRENTTRQGEIRQQIkqDA 855
Cdd:COG3321 1257 AALAALALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLAAALAA--LA 1334
|
490 500 510
....*....|....*....|....*....|.
gi 486167328 856 DNRQRQRALMAEMKQASQQVEDWGYLNALIG 886
Cdd:COG3321 1335 AAVAAALALAAAAAAAAAAAAAAAAAAALAA 1365
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
524-715 |
8.73e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.50 E-value: 8.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 524 ELSAN------QTRRDALEKEVKTLAEEGAALRGQLDALTQQlqrdesEAQSLLQEEQALTEEWQTLCATLGVQLQPQED 597
Cdd:PRK10929 196 QLSANnrqelaRLRSELAKKRSQQLDAYLQALRNQLNSQRQR------EAERALESTELLAEQSGDLPKSIVAQFKINRE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 598 LAGWLTaaeEHEQQLDQLSQRhalQTQIAAHTEQVarftaqiaqRQAsltadlaqytlsLPAPENEASWLNE-------- 669
Cdd:PRK10929 270 LSQALN---QQAQRMDLIASQ---QRQAASQTLQV---------RQA------------LNTLREQSQWLGVsnalgeal 322
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 486167328 670 RADEAKI-----WQQRQTEFADLQTQIDRLAPLLETLPQTDTADSDDDVPL 715
Cdd:PRK10929 323 RAQVARLpempkPQQLDTEMAQLRVQRLRYEDLLNKQPQLRQIRQADGQPL 373
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
410-637 |
1.21e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 410 ALAEARALHTRQRPLRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQYTQRLADKRLSYKTKAQELAdvrticEQEAR 489
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA------ALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 490 IKDLESQRAHLQSGQ---------------------PCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAA 548
Cdd:COG4942 85 LAELEKEIAELRAELeaqkeelaellralyrlgrqpPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 549 LRGQLDALTQQLQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLagwLTAAEEHEQQLDQLSQRHALQTQIAAH 628
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAE---LAELQQEAEELEALIARLEAEAAAAAE 241
|
....*....
gi 486167328 629 TEQVARFTA 637
Cdd:COG4942 242 RTPAAGFAA 250
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
203-698 |
1.48e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 42.92 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 203 LQAQASGVALLADEQLQQLEASLQALTDEEKRLLASQQGQQQHLHWLTRKNELHTELHARQQALYAAQEAREKAQPQ--- 279
Cdd:COG3899 747 LLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLgdr 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 280 ----LAALTLAQPARQLRPHWERIQEQTRAVERVRQHSDEVNARLQSAYRLRQRIRSCAHRQFTQLNATGQRLKTWLAEH 355
Cdd:COG3899 827 rleaRALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAA 906
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 356 DGIRVWRSELAGWRALLTQQSHDRAQLSQWQQQLLSDTRQRDALPPLTLDLTPQALAEARALHTRQRPLRHRLAALQGQI 435
Cdd:COG3899 907 AAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAA 986
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 436 VPKQKRQAQLQAAIARHHQEQAQYTQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAHLQSGQpcplcGSTTHP 515
Cdd:COG3899 987 AAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAA-----AAAAAA 1061
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 516 AIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQLQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQ 595
Cdd:COG3899 1062 LAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAA 1141
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 596 EDLAGWLTAAEEHEQQLDQLSQRHALQTQIAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAPENEASWLNERADEAK 675
Cdd:COG3899 1142 LALALAALLLLAALLLALALLLLALAALALAAALAALAAALLAAAAAAAAAAALLAALLALAARLAALLALALLALEAAA 1221
|
490 500
....*....|....*....|...
gi 486167328 676 IWQQRQTEFADLQTQIDRLAPLL 698
Cdd:COG3899 1222 LLLLLLLAALALAAALLALRLLA 1244
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
1-60 |
1.68e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 41.91 E-value: 1.68e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 1 MKILSLRLKNLNSLKGEwKVDFtaepfaSNGLFAITGPTGAGKTTLLDAICLALYHETPR 60
Cdd:COG3593 1 MKLEKIKIKNFRSIKDL-SIEL------SDDLTVLVGENNSGKSSILEALRLLLGPSSSR 53
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
780-898 |
2.47e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 780 RLEKQQQTLESQLQQAKALSAQSAQALADHQQQppagldptctAEQLAQRLAQLAQQLRENTTRQGEIRQQIKQDADNRQ 859
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERR----------IAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110
....*....|....*....|....*....|....*....
gi 486167328 860 RQRALMAEMKQASQQVEDWGYLNALIGSKEGDKFRKFAQ 898
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ 139
|
|
| UreG |
cd05540 |
urease accessory protein UreG; UreG is one of the four accessory proteins of urease. Urease is ... |
35-80 |
2.58e-03 |
|
urease accessory protein UreG; UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349776 Cd Length: 191 Bit Score: 40.33 E-value: 2.58e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 486167328 35 ITGPTGAGKTTLLDAICLALyHETPRLNTVSqsqNDLMTRDTAECL 80
Cdd:cd05540 5 IGGPVGSGKTALVEALCRAL-RDKYSIAVVT---NDIYTKEDAEFL 46
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
263-625 |
2.85e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 263 QQALYAAQEAREKAQPQLAAL------------TLAQPARQLRPHWERIQEQTRAVERVRQHSDEVNA---RLQSAYRLR 327
Cdd:PRK04863 292 RRELYTSRRQLAAEQYRLVEMarelaelneaesDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEEleeRLEEQNEVV 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 328 ---QRIRSCAHRQFTQLNATGQRLKTWLAEHDgirvwrselagwRALLTQQShdRAQLSQWQQQLLSDTRQRDALPPLTL 404
Cdd:PRK04863 372 eeaDEQQEENEARAEAAEEEVDELKSQLADYQ------------QALDVQQT--RAIQYQQAVQALERAKQLCGLPDLTA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 405 DLTPQALAEARA----LHTRQRPLRHRL-------------AALQGQIVPKQKRQAQLQAAIA--RHHQEQAQYTQRLAD 465
Cdd:PRK04863 438 DNAEDWLEEFQAkeqeATEELLSLEQKLsvaqaahsqfeqaYQLVRKIAGEVSRSEAWDVAREllRRLREQRHLAEQLQQ 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 466 KRlsyktkaQELADVRTICEQEARIKDLeSQRAHLQSGQPCPlcgstthpAIAAYQALeLSANQTRRDALEKEVKTLAEE 545
Cdd:PRK04863 518 LR-------MRLSELEQRLRQQQRAERL-LAEFCKRLGKNLD--------DEDELEQL-QEELEARLESLSESVSEARER 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 546 GAALRGQLDALTQQLQRDESEAQSLLQEEQALTEewqtLCATLGVQLQPQEDLAGWLTAAEEHEQQL----DQL-SQRHA 620
Cdd:PRK04863 581 RMALRQQLEQLQARIQRLAARAPAWLAAQDALAR----LREQSGEEFEDSQDVTEYMQQLLERERELtverDELaARKQA 656
|
....*
gi 486167328 621 LQTQI 625
Cdd:PRK04863 657 LDEEI 661
|
|
| HpsJ_fam |
NF038305 |
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the ... |
773-864 |
4.21e-03 |
|
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the biosynthesis or secretion of an extracellular polysaccharide shared by many Cyanobacteria.
Pssm-ID: 468465 [Multi-domain] Cd Length: 230 Bit Score: 39.88 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 773 LDEETVTRLEKQQQTLESQLQQ------AKALSAQSAQALADHQQQPPAgLDPTCTAEQLAQRLAQLAQQLRENTTRQGE 846
Cdd:NF038305 105 LSTQALQQINQQAGQQETQLQQqlnqlqAQTSPQQLNQLLKSEQKQGQA-LASGQLPEEQKEQLQQFKSNPQALDKFLAQ 183
|
90
....*....|....*...
gi 486167328 847 IRQQIKQDADNRQRQRAL 864
Cdd:NF038305 184 QLTQIRTQAEEAEKQARL 201
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
394-572 |
5.68e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 394 RQRDALPPLTLDLtpQALAEARALHTRQRPLRHRLAALQGQivpkqKRQAQLQAAIARHHQEQAQYTQRLADKRLSYKTK 473
Cdd:COG4913 249 EQIELLEPIRELA--ERYAAARERLAELEYLRAALRLWFAQ-----RRLELLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 474 AQELADVRTICEQ---------EARIKDLESQRAHLQSG-----QPCPLCGSTTHPAIAAYQALELSAnQTRRDALEKEV 539
Cdd:COG4913 322 REELDELEAQIRGnggdrleqlEREIERLERELEERERRrarleALLAALGLPLPASAEEFAALRAEA-AALLEALEEEL 400
|
170 180 190
....*....|....*....|....*....|...
gi 486167328 540 KTLAEEGAALRGQLDALTQQLQRDESEAQSLLQ 572
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| ABC_RecN |
cd03241 |
ATP-binding cassette domain of RecN; RecN ATPase involved in DNA repair; similar to ABC ... |
3-90 |
6.26e-03 |
|
ATP-binding cassette domain of RecN; RecN ATPase involved in DNA repair; similar to ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213208 [Multi-domain] Cd Length: 276 Bit Score: 39.88 E-value: 6.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 3 ILSLRLKNlNSLKGEWKVDFtaepfaSNGLFAITGPTGAGKTTLLDAICLALyhetprlntVSQSQNDLMTRDTAECLAE 82
Cdd:cd03241 1 LLELSIKN-FALIEELELDF------EEGLTVLTGETGAGKSILLDALSLLL---------GGRASADLIRSGAEKAVVE 64
|
....*...
gi 486167328 83 VEFEVKGE 90
Cdd:cd03241 65 GVFDISDE 72
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
4-50 |
7.65e-03 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 38.69 E-value: 7.65e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 486167328 4 LSLRLKNLN-SLKGEWK---------VDFTAEPfasNGLFAITGPTGAGKTTLLDAI 50
Cdd:cd03213 2 VTLSFRNLTvTVKSSPSksgkqllknVSGKAKP---GELTAIMGPSGAGKSTLLNAL 55
|
|
| AAA_15 |
pfam13175 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
1-50 |
8.32e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433011 [Multi-domain] Cd Length: 392 Bit Score: 39.89 E-value: 8.32e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 486167328 1 MKILSLRLKNLNSLKgEWKVDFtaepfaSNGLFAITGPTGAGKTTLLDAI 50
Cdd:pfam13175 1 MKIKSIIIKNFRCLK-DTEIDL------DEDLTVLIGKNNSGKSSILEAL 43
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
404-842 |
8.78e-03 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 39.95 E-value: 8.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 404 LDLTPQALAEARALHTRQRPLRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQYTQRLADKRLSYKTKAQELADVRTI 483
Cdd:COG4995 25 ALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALLAAALALALAAAALA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 484 CEQEARIKDLESQRAHLQSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQLQRD 563
Cdd:COG4995 105 ALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALALALAAAALALLALLL 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 564 ESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRHALQTQIAAHTEQVARFTAQIAQRQ 643
Cdd:COG4995 185 AALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAAAAALLALAAAL 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 644 ASLTADLAQYTLSLPAPENEASWLNERADEAKIWQQRQTEFADLQTQIDRLAPLLETLPQTDTADSDDDVPLDNWRQAHD 723
Cdd:COG4995 265 LLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALLALLLLLAAAAL 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 724 ECVSLQSQLQTLQEQTTQEQQRATEAIAHFDAALKNSPFDRQATFLAALLDEETVTRLEKQQQTLESQLQQAKALSAQSA 803
Cdd:COG4995 345 LAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLLAALALLLALAA 424
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 486167328 804 QALADHQQQ----PPAGLDPTCTAEQLAQRL-AQLAQQLRENTT 842
Cdd:COG4995 425 YAAARLALLalieYIILPDRLYAFVQLYQLLiAPIEAELPGIKR 468
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
244-652 |
9.68e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 40.00 E-value: 9.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 244 QHLHWLTRKNELHTELHARQQALYAAQEAREKAQPQLAA---LTLAQPARQLRPHWERIQEQTRAVERVRQHSDEVNARL 320
Cdd:COG3903 513 DQLAWLARLDAEHDNLRAALRWALAHGDAELALRLAAALapfWFLRGLLREGRRWLERALAAAGEAAAALAAAAALAAAA 592
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 321 QSAYRLRQRIRSCAHRQFTQLNATGQRLKTWLAEHDGIRVWRSELAGWRALLTQQSHDRAQLSQWQQQLLSDTRQRDALP 400
Cdd:COG3903 593 AAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAA 672
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 401 PLTLDLTPQALAEARALHTRQRPLRHRLAALQGQIVPKQKRQAQLQAAIARHHQEQAQYTQRLADKRLSYKTKAQELADV 480
Cdd:COG3903 673 AAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAAAAAALLAAAAAAALAAAAAAAALALAAAAA 752
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 481 RTICEQEARIKDLESQRAHLQSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQL 560
Cdd:COG3903 753 AAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAA 832
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486167328 561 QRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRHALQTQIAAHTEQVARFTAQIA 640
Cdd:COG3903 833 ALAAAAAAAAAAAAAAAAAAALAAALAAAAAAAAAAALAAAAAAAAAAAAALLAAAAAAAAAAAAAAAAAAALAAAAAAA 912
|
410
....*....|..
gi 486167328 641 QRQASLTADLAQ 652
Cdd:COG3903 913 AAAALAAAAAAA 924
|
|
| |
