|
Name |
Accession |
Description |
Interval |
E-value |
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
2-1470 |
0e+00 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 2446.66 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 2 IERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKL 81
Cdd:COG3096 1 IERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 82 KAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLSLAELKDKLDEME 161
Cdd:COG3096 81 KPGVCYAALDVVNSRGQRLLVGVRLQQVAGRDKKVDIKPFIIQGLPEDVKPTDLLTETLDGRQARVLPLNELKEKAEELE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 162 GVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALRE 241
Cdd:COG3096 161 GVQFKQFNSITDYHAFMFDLGVTPKRLRSSSDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALRE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 242 NRLTLEAIRVTQSDRDLFKHLISEATDYVAADYMRHANERRVHLDQALAFRRELYTSRKQLAAEQYKHVDMARELGEHNG 321
Cdd:COG3096 241 NRMTLEAIRVTQSDRDLFKHLITEATNYVAADYMRHANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 322 AEGSLEADYQAASDHLNLVQTALRQQEKIERYEADLEELQIRLEEQNEVVAEAAEMQDENEARAEAAELEVDELKSQLAD 401
Cdd:COG3096 321 RESDLEQDYQAASDHLNLVQTALRQQEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 402 YQQALDVQQTRAIQYNQAISALARAKELCHLPDLTPESAAEWLDTFQAKEQEATEKLLSLEQKMSVAQTAHSQFEQAYQL 481
Cdd:COG3096 401 YQQALDVQQTRAIQYQQAVQALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYEL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 482 VAAINGPLARSEAWDVARELLRDGVNQRHLAEQVQPLRMRLSELEQRLREQQEAERLLAEFCKRQGKNFDI-DELEALHQ 560
Cdd:COG3096 481 VCKIAGEVERSQAWQTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAaEELEELLA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 561 ELEARIASLSESVSSASEQRMALRQEQEQLQSRIQHLMRRAPVWLAAQNSLNQLSEQCGEEFTSSQEVTEYLQQLLERER 640
Cdd:COG3096 561 ELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLERER 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 641 EAIVERDEVGARKNAVDEEIERLSQPGGAEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQI 720
Cdd:COG3096 641 EATVERDELAARKQALESQIERLSQPGGAEDPRLLALAERLGGVLLSEIYDDVTLEDAPYFSALYGPARHAIVVPDLSAV 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 721 AEQLEGLTDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPSLPIFGRAARENRIESLHAEREVLSER 800
Cdd:COG3096 721 KEQLAGLEDCPEDLYLIEGDPDSFDDSVFDAEELEDAVVVKLSDRQWRYSRFPEVPLFGRAAREKRLEELRAERDELAEQ 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 801 FATLSFDVQKTQRLHQAFSRFIGSHLSVAFEDDPEAEIRRLNGRRVELERALATHENDNQQQRLQFEQAKEGVSALNRLL 880
Cdd:COG3096 801 YAKASFDVQKLQRLHQAFSQFVGGHLAVAFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLL 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 881 PRLNLLADETLADRVDEIQERLDEAQEAARFVQQYGNQLAKLEPVVSVLQSDPEQFEQLKEDYAWSQQMQRDARQQAFAL 960
Cdd:COG3096 881 PQANLLADETLADRLEELREELDAAQEAQAFIQQHGKALAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFAL 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 961 AEVVERRAHFSYSDSAEMLSGNSDLNEKLRQRLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDTKKELLNDLQR 1040
Cdd:COG3096 961 SEVVQRRPHFSYEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQ 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1041 ELQDIGVRADSGAEERARQRRDELHAQLSNNRSRRNQLEKALTFCEAEMENLTRKLRKLERDYHEMREQVVTAKAGWCAV 1120
Cdd:COG3096 1041 ELEELGVQADAEAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAKAGWCAV 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1121 MRMVKDNGVERRLHRRELAYLSADELRSMSDKALGALRLAIADNEHLRDVLRLSEDPKRPERKIQFFVAVYQHLRERIRQ 1200
Cdd:COG3096 1121 LRLARDNDVERRLHRRELAYLSADELRSMSDKALGALRLAVADNEHLRDALRLSEDPRRPERKVQFYIAVYQHLRERIRQ 1200
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1201 DIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRMLNQGLQSVSFGQVNSVRLNVNVR 1280
Cdd:COG3096 1201 DIIRTDDPVEAIEQMEIELARLTEELTSREQKLAISSESVANIIRKTIQREQNRIRMLNQGLQNVSFGQVKGVRLNVNIR 1280
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1281 ETHATLLDVLSEQQEQHQDLFNSNRLTFSEALAKLYQRLNPQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRA 1360
Cdd:COG3096 1281 ETHAQLLDALSEQQEQHQDLFFSNRLTFSEALAKLYQRLNPHIDMGQRSPQTIGEELLDYRNYLELEVEVNRGADGWLRA 1360
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1361 ESGALSTGEAIGTGMSILVMVVQSWEDEARRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPENISP 1440
Cdd:COG3096 1361 ESGALSTGEAIGTGMSILLMVVQSWEEESRRLRGKDISPCRLLFLDEAARLDAKSIATLFELCERLDMQLLIAAPENISP 1440
|
1450 1460 1470
....*....|....*....|....*....|
gi 486184184 1441 EKGTTYKLVRKVFQNTEHVHVVGLRGFAPQ 1470
Cdd:COG3096 1441 EKGTTYKLVRKVFNNQEHVHVVGLRGFGQE 1470
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1-1485 |
0e+00 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 2434.73 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1 MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGK 80
Cdd:PRK04863 1 MIERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 81 LKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLSLAELKDKLDEM 160
Cdd:PRK04863 81 LKAGVCYAALDVVNSRGQRVLVGVRLQQVAGRDRKVDIKPFAIQGLPDSVQPTDLLTETVNERQARVLTLNELKDKAAAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 161 EGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR 240
Cdd:PRK04863 161 EGVQFKQFNSITDYHSLMFDLGIIPRRLRSSSDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 241 ENRLTLEAIRVTQSDRDLFKHLISEATDYVAADYMRHANERRVHLDQALAFRRELYTSRKQLAAEQYKHVDMARELGEHN 320
Cdd:PRK04863 241 ENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELN 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 321 GAEGSLEADYQAASDHLNLVQTALRQQEKIERYEADLEELQIRLEEQNEVVAEAAEMQDENEARAEAAELEVDELKSQLA 400
Cdd:PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 401 DYQQALDVQQTRAIQYNQAISALARAKELCHLPDLTPESAAEWLDTFQAKEQEATEKLLSLEQKMSVAQTAHSQFEQAYQ 480
Cdd:PRK04863 401 DYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 481 LVAAINGPLARSEAWDVARELLRDGVNQRHLAEQVQPLRMRLSELEQRLREQQEAERLLAEFCKRQGKNF-DIDELEALH 559
Cdd:PRK04863 481 LVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLdDEDELEQLQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 560 QELEARIASLSESVSSASEQRMALRQEQEQLQSRIQHLMRRAPVWLAAQNSLNQLSEQCGEEFTSSQEVTEYLQQLLERE 639
Cdd:PRK04863 561 EELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 640 REAIVERDEVGARKNAVDEEIERLSQPGGAEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQ 719
Cdd:PRK04863 641 RELTVERDELAARKQALDEEIERLSQPGGSEDPRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPARHAIVVPDLSD 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 720 IAEQLEGLTDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPSLPIFGRAARENRIESLHAEREVLSE 799
Cdd:PRK04863 721 AAEQLAGLEDCPEDLYLIEGDPDSFDDSVFSVEELEKAVVVKIADRQWRYSRFPEVPLFGRAAREKRIEQLRAEREELAE 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 800 RFATLSFDVQKTQRLHQAFSRFIGSHLSVAFEDDPEAEIRRLNGRRVELERALATHENDNQQQRLQFEQAKEGVSALNRL 879
Cdd:PRK04863 801 RYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRL 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 880 LPRLNLLADETLADRVDEIQERLDEAQEAARFVQQYGNQLAKLEPVVSVLQSDPEQFEQLKEDYAWSQQMQRDARQQAFA 959
Cdd:PRK04863 881 LPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFA 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 960 LAEVVERRAHFSYSDSAEMLSGNSDLNEKLRQRLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDTKKELLNDLQ 1039
Cdd:PRK04863 961 LTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELK 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1040 RELQDIGVRADSGAEERARQRRDELHAQLSNNRSRRNQLEKALTFCEAEMENLTRKLRKLERDYHEMREQVVTAKAGWCA 1119
Cdd:PRK04863 1041 QELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCA 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1120 VMRMVKDNGVERRLHRRELAYLSADELRSMSDKALGALRLAIADNEHLRDVLRLSEDPKRPERKIQFFVAVYQHLRERIR 1199
Cdd:PRK04863 1121 VLRLVKDNGVERRLHRRELAYLSADELRSMSDKALGALRLAVADNEHLRDVLRLSEDPKRPERKVQFYIAVYQHLRERIR 1200
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1200 QDIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRMLNQGLQSVSFGQVNSVRLNVNV 1279
Cdd:PRK04863 1201 QDIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSESVANIIRKTIQREQNRIRMLNQGLQNISFGQVKSVRLNVNV 1280
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1280 RETHATLLDVLSEQQEQHQDLFNSNRLTFSEALAKLYQRLNPQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLR 1359
Cdd:PRK04863 1281 RETHAMLLDALSEQQEQHQDLFNSARLTFSEALAKLYQRLNPHIDMGQRTPQTIGEELLDYRNYLELEVEVNRGADGWLR 1360
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1360 AESGALSTGEAIGTGMSILVMVVQSWEDEARRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPENIS 1439
Cdd:PRK04863 1361 AESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEAARLDAKSIATLFELCERLDMQLLIAAPENIS 1440
|
1450 1460 1470 1480
....*....|....*....|....*....|....*....|....*.
gi 486184184 1440 PEKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPETLPGTQTEDTPS 1485
Cdd:PRK04863 1441 PEKGTTYKLVRKVFNNREHVHVVGLRGFAQLLPDTLPGQDEAESGA 1486
|
|
| MukB |
pfam04310 |
MukB N-terminal; This family represents the N-terminal region of MukB, one of a group of ... |
2-227 |
2.68e-140 |
|
MukB N-terminal; This family represents the N-terminal region of MukB, one of a group of bacterial proteins essential for the movement of nucleoids from mid-cell towards the cell quarters (i.e. chromosome partitioning). The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif (in other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands).
Pssm-ID: 427856 [Multi-domain] Cd Length: 226 Bit Score: 429.21 E-value: 2.68e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 2 IERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKL 81
Cdd:pfam04310 1 IERGKFQSLTMINWNGFFARTFDLDQLVTTLSGGNGAGKSTTMAAFITALIPDLSLLHFRNTTEAGSTSGSRDKGLYGKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 82 KAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLSLAELKDKLDEME 161
Cdd:pfam04310 81 QAGHCYSAIDVANSRGQRLWFGVHLQQVAGRDRKVDITPFAIQGLPEDVQPTDVLLERLDDGHARVRSLNELKDAAAELG 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 486184184 162 GVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSG 227
Cdd:pfam04310 161 GARFKQFNSITDYHNFMFDMGVTPKKLRDQRDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSG 226
|
|
| MukB_hinge |
pfam16330 |
MukB hinge domain; The hinge domain of chromosome partition protein MukB is responsible for ... |
644-810 |
1.48e-79 |
|
MukB hinge domain; The hinge domain of chromosome partition protein MukB is responsible for dimerization and is also involved in protein-DNA interactions and conformational flexibility.
Pssm-ID: 435281 [Multi-domain] Cd Length: 167 Bit Score: 259.19 E-value: 1.48e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 644 VERDEVGARKNAVDEEIERLSQPGGAEDQRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQIAEQ 723
Cdd:pfam16330 1 QERDELAARKERLEKEIERLLQPGGSEDPRLPRLAERLGGVLLSEIYDDISLEDAPYFSALYGPARHAIVVPDLSDAADK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 724 LEGLTDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPSLPIFGRAARENRIESLHAEREVLSERFAT 803
Cdd:pfam16330 81 LNGLEDCPDDLYLIEGDPDSFDESAFSAEELEDAVLVHDSDRQLRYSRFPEVPLFGRAAREKRLEALRAEREELAERYAK 160
|
....*..
gi 486184184 804 LSFDVQK 810
Cdd:pfam16330 161 LAFDVQK 167
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
345-1101 |
5.68e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.97 E-value: 5.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 345 RQQEKIERY---EADLEELQIRL------------EEQNEVVAEAAEMQDENEARAEAAELEVDELKSQLADYQQALDVQ 409
Cdd:TIGR02168 207 RQAEKAERYkelKAELRELELALlvlrleelreelEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 410 QTRAIQYNQAISAL----ARAKELCHLPDLTPESAAEWLDTFQAKEQEATEKLLSLEQKMSVAQTAHSQFEQAYQ-LVAA 484
Cdd:TIGR02168 287 QKELYALANEISRLeqqkQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEeLEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 485 INGPLARSEAWDVARELLRDGVNQRH-----LAEQVQPLRMRLSELE---QRLREQQEAERLLAEFCKRQGKNFDIDELE 556
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKVAQLElqiasLNNEIERLEARLERLEdrrERLQQEIEELLKKLEEAELKELQAELEELE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 557 ALHQELEARIASLSESVSSASEQRMALRQEQEQLQSRIQHLMRRAPVWLAAQNSLNQLSEQCGEEFTSSQEVTEYLQQLL 636
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLS 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 637 ER-----EREAIVE-------RDEVGARKNAVDEEIERLSQ---------------PGGAEDQRLNALA--ERFGGVLLS 687
Cdd:TIGR02168 527 ELisvdeGYEAAIEaalggrlQAVVVENLNAAKKAIAFLKQnelgrvtflpldsikGTEIQGNDREILKniEGFLGVAKD 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 688 EIYDDVSLEDApyFSALYGpsrHAIVVPDLsQIAEQLEGLTDCPEDLYLIEGDpqsfddsvfsvdelekavvvkIADRQW 767
Cdd:TIGR02168 607 LVKFDPKLRKA--LSYLLG---GVLVVDDL-DNALELAKKLRPGYRIVTLDGD---------------------LVRPGG 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 768 RYSRFPSLPIFGRAARENRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRFIgshlsVAFEDDPEAEIRRLNGRRVE 847
Cdd:TIGR02168 660 VITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL-----EQLRKELEELSRQISALRKD 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 848 LERALATHENDNQQQRLQFEQAKEgvsalnrlLPRLNLLADETLADRVDEIQERLDEAQEAARFVQQYGNQLAKLEPVVS 927
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTE--------LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 928 VLQsdpEQFEQLKEDYAWSQQMQRDARQQAFALAEVVERRAHFSYSDSAEMLSGNSDLN------EKLRQRLEQAEAERT 1001
Cdd:TIGR02168 807 ELR---AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEeleeliEELESELEALLNERA 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1002 RAREALRSHAAQLSQYSQVLASLKSSYDTKKELLNDLQRELQDIGVRadsgaEERARQRRDELHAQLSNNRSRRNQLEKA 1081
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR-----LEGLEVRIDNLQERLSEEYSLTLEEAEA 958
|
810 820
....*....|....*....|.
gi 486184184 1082 LTFC-EAEMENLTRKLRKLER 1101
Cdd:TIGR02168 959 LENKiEDDEEEARRRLKRLEN 979
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
327-943 |
6.07e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 6.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 327 EADYQAASDHLNLVQTAL-RQQEKIERYEADLEELQIRLEEQNEVVAEAAEMQDENEARAEAAELEVDELKSQLADYQQA 405
Cdd:COG1196 224 ELEAELLLLKLRELEAELeELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 406 LDVQQTRAIQYNQAISALARAKElchlpdltpeSAAEWLDTFQAKEQEATEKLLSLEQKMSVAQTAHSQFEQAYQLVAAI 485
Cdd:COG1196 304 IARLEERRRELEERLEELEEELA----------ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 486 NGPLARSEAwDVARELLRDGVNQRHLAEQVQPLRMRLSELEQRLREQQEAERLLAEfcKRQGKNFDIDELEALHQELEAR 565
Cdd:COG1196 374 LAEAEEELE-ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE--ALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 566 IASLSESVSSASEQRMALRQEQEQLQSRIQHLMRRAPVWLAAQNSLNQLSEQCGEEFTSSQEVTEYLQQLLEREREAIVE 645
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 646 RDEVGARKNAVDEEIERLSQPGGAEDQRLNALAERFGGVLLSEIyDDVSLEDAPYFSALYGPSRHAIVVPDLSQIAEQLE 725
Cdd:COG1196 531 GVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRA-TFLPLDKIRARAALAAALARGAIGAAVDLVASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 726 gltdcpedlyliegdpqsFDDSVFSVDELEKAVVVKIADRQWRYSRFPSLPIFGRAARENRIESLHAEREVLSERFATLS 805
Cdd:COG1196 610 ------------------EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 806 FDVQKTQRLHQAFSRFIGSHLSVAFEDDPEAEIRRLNGRRVELERALATHENDNQQQRLQFEQAKEGVSALNRLLPRLNL 885
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 486184184 886 LADETLAD-RVDEIQERLDEAQEaarfvqqygnQLAKLEPVvsvlqsDP---EQFEQLKEDY 943
Cdd:COG1196 752 ALEELPEPpDLEELERELERLER----------EIEALGPV------NLlaiEEYEELEERY 797
|
|
| SbcC_Walker_B |
pfam13558 |
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from ... |
1335-1425 |
6.15e-14 |
|
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homolog SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is separated of the Walker A domain by a long coiled-coil domain and forms the nucleotide-binding domain (NBD) when the coiled coils fold back on themselves and bring together Walker A and B domains. Two RAD50-NBDs forms heterotetramers with a Mre11 nuclease dimer that assemble as catalytic head module that binds and cleaves DNA in an ATP-dependent reaction. Through secondary structural analysis, it has been suggested that there is a wide structural conservation in the Rad50/SMC protein family as seen in structural similarities between RAD50's hook and ABC-ATPase MukB's elbow region.
Pssm-ID: 463921 [Multi-domain] Cd Length: 90 Bit Score: 68.80 E-value: 6.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1335 EELLDYRNYLEMEVEVNR--GSDGWLRAESGALSTGEAIGTGMSILV--MVVQSWEDEARRlrgkdiSPCRLLFLDEA-A 1409
Cdd:pfam13558 1 ARVLDYRNWLSFEVEVRDedGSEVETYRRSGGLSGGEKQLLAYLPLAaaLAAQYGSAEGRP------PAPRLVFLDEAfA 74
|
90
....*....|....*.
gi 486184184 1410 RLDARSIATLFELCER 1425
Cdd:pfam13558 75 KLDEENIRTALELLRA 90
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
987-1435 |
4.57e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 71.10 E-value: 4.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 987 EKLRQRLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDTK--KELLNDLQRELQDIgvRADSGAEERARQRRDEL 1064
Cdd:COG4913 620 AELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVAsaEREIAELEAELERL--DASSDDLAALEEQLEEL 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1065 HAQLSNNRSRRNQLEKALTFCEAEMENLTRKLRKLERDYHEMREQVVTAKAGWCAVMRmvkDNGVERRLHRRELAYLSA- 1143
Cdd:COG4913 698 EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF---AAALGDAVERELRENLEEr 774
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1144 -DELRSMSDKALGALRLAIAD--NEHLRDVLRLSEDPKrperkiqfFVAVYQHLRERIRQDiirtddpveaieqmeiELS 1220
Cdd:COG4913 775 iDALRARLNRAEEELERAMRAfnREWPAETADLDADLE--------SLPEYLALLDRLEED----------------GLP 830
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1221 RLTEELtsREQKLAISSRSVANI---IRKTIQREQNRIRMLNQGLQSVSFGQ------VNSVRLNVNVRETHATLLDVLS 1291
Cdd:COG4913 831 EYEERF--KELLNENSIEFVADLlskLRRAIREIKERIDPLNDSLKRIPFGPgrylrlEARPRPDPEVREFRQELRAVTS 908
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1292 EQQEQHQDLFNSNRLTFSEALAKLyQRLNPQIDMGQRtpqtigEELLDYRNYLEMEVEVNRGSDG---WLRAESGALSTG 1368
Cdd:COG4913 909 GASLFDEELSEARFAALKRLIERL-RSEEEESDRRWR------ARVLDVRNHLEFDAEEIDREDGeevETYSSSGGKSGG 981
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 486184184 1369 E-----AIGTGMSIlvmvvqswedeARRLRGKDISP--CRLLFLDEA-ARLDARSIATLFELCERLQMQLIIAAP 1435
Cdd:COG4913 982 EkqklaYFILAAAL-----------AYQLGLEGRGRpsFRTVVLDEAfSKMDEEFARRALRLFKELGLQLLIATP 1045
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
392-1096 |
8.64e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 8.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 392 VDELKSQLadyqQALDVQQTRAIQYnQAISALARAKELchlpdltpESAAEWLDTFQAKEQEATEKLLSLEQKMSVAQTA 471
Cdd:COG1196 195 LGELERQL----EPLERQAEKAERY-RELKEELKELEA--------ELLLLKLRELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 472 HSQFE--------QAYQLVAAINgpLARSEAWDVARELLRDGVNQRHLAEQVQPLRMRLSELEQRLREQQEAERLLAEfc 543
Cdd:COG1196 262 LAELEaeleelrlELEELELELE--EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE-- 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 544 KRQGKNFDIDELEALHQELEARIASLSESVSSASEQRMALRQEQEQLQSRIQHLMRRApvwLAAQNSLNQLSEQCGEEFT 623
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA---AELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 624 SSQEVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGAEDQRLNALAERFGGVLLSEIYDDVSLEDApyfsa 703
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA----- 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 704 lygpsrhaivvpdLSQIAEQLEgltdcpedlylIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRysrfpSLPIFGRAAR 783
Cdd:COG1196 490 -------------AARLLLLLE-----------AEADYEGFLEGVKAALLLAGLRGLAGAVAVLI-----GVEAAYEAAL 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 784 ENRIESLHAEREVLSERFATLSFDVQKTQRLHQAfsRFIGSHLSVAFEDDPEAEIRRLNGRRVELERALATHENDNQQQR 863
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRA--TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 864 LQFEQAKEGVSALNRLLPRLNLLADETLADRVDEIQERLDEAQEAARFVQQYGNQLAKLEpvvsvlqsdpeqfeqlkedy 943
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE-------------------- 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 944 awsQQMQRDARQQAFALAEVVERRAhfsysDSAEMLSGNSDLNEKLRQRLEQAEAERTRAREALRSHAAQLSQYSQVLAS 1023
Cdd:COG1196 679 ---AELEELAERLAEEELELEEALL-----AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1024 LKSSYDTKKELLNDLQRELQDIGVRADS------GAEE---RARQRRDELHAQLSNNRSRRNQLEKALtfceAEMENLTR 1094
Cdd:COG1196 751 EALEELPEPPDLEELERELERLEREIEAlgpvnlLAIEeyeELEERYDFLSEQREDLEEARETLEEAI----EEIDRETR 826
|
..
gi 486184184 1095 KL 1096
Cdd:COG1196 827 ER 828
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
347-689 |
1.35e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 347 QEKIERYEADLEELQIRLeeqNEVVAEAAEMQDENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYNQAISALARA 426
Cdd:TIGR02168 683 EEKIEELEEKIAELEKAL---AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 427 KElchlpdlTPESAAEWLDTFQAKEQEATEKLLSLEQKMSVAQTAHSQFEQAYQlvaaingpLARSEAWDVARELLRDGV 506
Cdd:TIGR02168 760 EA-------EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD--------ELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 507 NQRHLAEQVQPLRMRLSELEQRLREQQEAERLLAEfckrqgknfDIDELEALHQELEARIASLSESVSSASEQRMALRQE 586
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAA---------EIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 587 QEQLQSRIQHLMRRApvwLAAQNSLNQLSEQCGEEFTSSQEVTEYLQQLLERERE-AIVERDEVGARKNAVDEEIERLSQ 665
Cdd:TIGR02168 896 LEELSEELRELESKR---SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALENKIEDDEEEARR 972
|
330 340
....*....|....*....|....
gi 486184184 666 pggaEDQRLNALAERFGGVLLSEI 689
Cdd:TIGR02168 973 ----RLKRLENKIKELGPVNLAAI 992
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
889-1113 |
1.15e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 889 ETLAdRVDEIQERLDEAQEAARFVQQYGNQLAKLEPVVSVLQSDPEQfEQLKEDYAWSQQmQRDARQQAFALAEVVERRA 968
Cdd:COG4913 252 ELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAEL-EELRAELARLEA-ELERLEARLDALREELDEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 969 HFSYSDSAemlsgnsdlneklRQRLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDTKKELLNDLQRELQDIGVR 1048
Cdd:COG4913 329 EAQIRGNG-------------GDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 486184184 1049 ADSgAEERARQRRDELHAQLSNNRSRRNQLekaltfcEAEMENLTRKLRKLERDYHEMREQVVTA 1113
Cdd:COG4913 396 LEE-ELEALEEALAEAEAALRDLRRELREL-------EAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
452-1045 |
1.19e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 1.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 452 QEATEKLLSLEQkmsvAQTAHSQFEQAYQLVAAINGPLARSEAWDVARELLRDGVNQRHLAEQVQPLRMRLSELEQRLRE 531
Cdd:COG4913 245 EDAREQIELLEP----IRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 532 QQEAERLLaefcKRQGKNFDIDELEALHQELEARiaslsesvssaSEQRMALRQEQEQLQSRIQHLMRRAP----VWLAA 607
Cdd:COG4913 321 LREELDEL----EAQIRGNGGDRLEQLEREIERL-----------ERELEERERRRARLEALLAALGLPLPasaeEFAAL 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 608 QNSLNQLSEQCGEEftssqevteyLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGAEDQRL----NALAE---- 679
Cdd:COG4913 386 RAEAAALLEALEEE----------LEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLlalrDALAEalgl 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 680 -----RFGGVLLseiydDVSLEDAPYFSA---LYGPSRHAIVVPD--LSQIAE-----------QLEGLTDCPEDLYLIE 738
Cdd:COG4913 456 deaelPFVGELI-----EVRPEEERWRGAierVLGGFALTLLVPPehYAAALRwvnrlhlrgrlVYERVRTGLPDPERPR 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 739 GDPQS------FDDSVF------------------SVDELE---KAVVV-----------KIADRQWRYSRfpslPIFGR 780
Cdd:COG4913 531 LDPDSlagkldFKPHPFrawleaelgrrfdyvcvdSPEELRrhpRAITRagqvkgngtrhEKDDRRRIRSR----YVLGF 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 781 AAREnRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRFIGSHLSVAFEDDPEAEIRRLNGRRVELERALATHENDN- 859
Cdd:COG4913 607 DNRA-KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSd 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 860 --QQQRLQFEQAKEGVSALNRLLPRLNLLAdETLADRVDEIQERLDEAQEAARFVQQYGN--QLAKLEPVVSVLQSDpEQ 935
Cdd:COG4913 686 dlAALEEQLEELEAELEELEEELDELKGEI-GRLEKELEQAEEELDELQDRLEAAEDLARleLRALLEERFAAALGD-AV 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 936 FEQLKEDYawSQQMQRDARQQAFALAEVVERRAHFSYSDSAEMLSGNSDL--NEKLRQRLEQAEAE-----RTRAREALR 1008
Cdd:COG4913 764 ERELRENL--EERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLesLPEYLALLDRLEEDglpeyEERFKELLN 841
|
650 660 670
....*....|....*....|....*....|....*..
gi 486184184 1009 SHAAQLSqySQVLASLKSSYDTKKELLNDLQRELQDI 1045
Cdd:COG4913 842 ENSIEFV--ADLLSKLRRAIREIKERIDPLNDSLKRI 876
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
8-53 |
1.57e-06 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 46.82 E-value: 1.57e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 486184184 8 RSLTLINWNGFFARTFDLDELVTTL-SGGNGAGKSTTMAAFVTALIP 53
Cdd:pfam13555 2 TRLQLINWGTFDGHTIPIDPRGNTLlTGPSGSGKSTLLDAIQTLLVP 48
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
780-1258 |
4.59e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 4.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 780 RAARENRIESLHAEREVLSERFATLSFDVQKTQ-RLHQAFSRFIGSHLSVAFEddpEAEIRRLNGRRVELERALATHEND 858
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQaEEYELLAELARLEQDIARL---EERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 859 NQQQRLQFEQAKEGVSALNRLLPRLNLLADETLADRVDEIQERLDEAQEAARFVQQYGNQLAKLEPVVSVLQSDPEQFEQ 938
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 939 LKEDYAWSQQMQRDARQQAFALAEVVERRAHfSYSDSAEMLSGNSDLNEKLRQRLEQAEAERTRAREALRSHAAQLSQYS 1018
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEE-ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1019 QVLASLKS--------SYDTKKELLNDLQRELQDIG-------------VRADSGAEERARQRRDELHAQLSNNRSRRNQ 1077
Cdd:COG1196 491 ARLLLLLEaeadyegfLEGVKAALLLAGLRGLAGAVavligveaayeaaLEAALAAALQNIVVEDDEVAAAAIEYLKAAK 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1078 LEKALTFCEAEMENLTRKLRKLERDYHEMREQVVTAKAGWCA-----------VMRMVKDNGVERRLHRRELAYLSADEL 1146
Cdd:COG1196 571 AGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADaryyvlgdtllGRTLVAARLEAALRRAVTLAGRLREVT 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1147 RSMSDKALGALRLAIADNEHLRDVLRLSEDPKRPERKIQFFVAVYQH----LRERIRQDIIRTDDPVEAIEQMEIELSRL 1222
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEallaEEEEERELAEAEEERLEEELEEEALEEQL 730
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 486184184 1223 TEELTSREQKLAISSRSVANI-------------IRKTIQREQNRIRML 1258
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEaleelpeppdleeLERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
987-1293 |
4.88e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 4.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 987 EKLRQRLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDTKKELLNDLQRELQDIGVRAD--SGAEERARQRRDEL 1064
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISrlEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1065 HAQLSNNRSRRNQLEKALTFCEAEMENLTRKLRKLERDYHEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSAD 1144
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1145 ELRSMSDKALGALRLAIADNEHLRDVLRLSEDPKRPERkiqffvAVYQHLRERIRQDIIRTDDPVEAIEQMEIELSRLTE 1224
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE------AELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 486184184 1225 ELTSREQKLaissrsvaNIIRKTIQREQNRIRMLNQGLQSVSfGQVNSVRLNVNVRETHATLLDVLSEQ 1293
Cdd:TIGR02168 469 ELEEAEQAL--------DAAERELAQLQARLDSLERLQENLE-GFSEGVKALLKNQSGLSGILGVLSEL 528
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
632-1317 |
5.05e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 5.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 632 LQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGAEDQRLNALAERFGGvLLSEIYD--------DVSLEDAPYFSA 703
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA-LANEISRleqqkqilRERLANLERQLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 704 LYGpsrhAIVVPDLSQIAEQLEGLTDCPEDLYLIEGDPQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPSlpifGRAAR 783
Cdd:TIGR02168 320 ELE----AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS----KVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 784 ENRIESLHAEREVLSERfatlsfdVQKTQRLHQAFSRFIGSHLSVAFEDDPEAEIRRLNGRRVELERALATHENDNQQQR 863
Cdd:TIGR02168 392 ELQIASLNNEIERLEAR-------LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 864 LQFEQAKEGVSALNRLLPRLNLLADEtlADRVDEIQERLDEAQEAARFVQQYGNQLAKLEPVVSVLQSDPEQFEQLKEDy 943
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQAR--LDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEA- 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 944 AWSQQMQ-------RDARQQAFALAEVVERRAHFSYSDSAemlsGNSDLNEKLRQRLEQAEAERTRAREaLRSHAAqlsQ 1016
Cdd:TIGR02168 542 ALGGRLQavvvenlNAAKKAIAFLKQNELGRVTFLPLDSI----KGTEIQGNDREILKNIEGFLGVAKD-LVKFDP---K 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1017 YSQVLASLKS------SYDTKKELLNDLQRELQDI----------------GVRADSGAEERaRQRRDELHAQLSNNRSR 1074
Cdd:TIGR02168 614 LRKALSYLLGgvlvvdDLDNALELAKKLRPGYRIVtldgdlvrpggvitggSAKTNSSILER-RREIEELEEKIEELEEK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1075 RNQLEKALTFCEAEMENLTRKLRKLERDYHEMREQVVTAKAGWCAVMRmvKDNGVERRLHRRELAYLSADELRSMSDKAL 1154
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA--EVEQLEERIAQLSKELTELEAEIEELEERL 770
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1155 GALRLAIADNEHLR-----DVLRLSEDPKRPERKIQFFVAVYQHLRERIRQDIIRTDDPVEAIEQMEIELSRLTEELTSR 1229
Cdd:TIGR02168 771 EEAEEELAEAEAEIeeleaQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1230 EQKLAISSRSVANI------IRKTIQREQNRIRMLNQGLQSVSFGQVNSVRLNVNVRETHATLLDVLSEQQEQHQDL--- 1300
Cdd:TIGR02168 851 SEDIESLAAEIEELeelieeLESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLelr 930
|
730 740
....*....|....*....|
gi 486184184 1301 ---FNSNRLTFSEALAKLYQ 1317
Cdd:TIGR02168 931 legLEVRIDNLQERLSEEYS 950
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
523-1114 |
7.63e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 7.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 523 SELEQRLREQQEAERLLAEFCKRQGKNF-DIDELEALHQELEARIASLSESVSSASEQRMALRQEQEQLQSRIQHLMRRA 601
Cdd:TIGR02169 301 AEIASLERSIAEKERELEDAEERLAKLEaEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 602 PVWLAAQNSLNQLSEQCGEEFTSSQEVTEYLQQLLEREREAIV------------------ERDEVGARKNAVDEEIERL 663
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAdlnaaiagieakineleeEKEDKALEIKKQEWKLEQL 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 664 SQPGGAEDQRLNALAERFGGV------LLSEIYD-----DVSLEDAPYFSA---LYGPSRHAIV--VPDLSQIAEQLEGL 727
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVekelskLQRELAEaeaqaRASEERVRGGRAveeVLKASIQGVHgtVAQLGSVGERYATA 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 728 tdcpedlylIEGDPQSFDDSVFSVDELEKAVVVKIADRQwRYSRFPSLPIfgraareNRIESLHAEREVLSERFAT---- 803
Cdd:TIGR02169 541 ---------IEVAAGNRLNNVVVEDDAVAKEAIELLKRR-KAGRATFLPL-------NKMRDERRDLSILSEDGVIgfav 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 804 --LSFDvqktQRLHQAFSRFIGShlSVAFEDDPEAeiRRLNG--RRVELERAL------ATHENDNQQQRLQFEQAKEGV 873
Cdd:TIGR02169 604 dlVEFD----PKYEPAFKYVFGD--TLVVEDIEAA--RRLMGkyRMVTLEGELfeksgaMTGGSRAPRGGILFSRSEPAE 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 874 SALNRLLPRLNLLADETLADRVDEIQERLDEAQEAARFVQQygnQLAKLEPVVSVLQSDPEQF----EQLKEDYAWSQQM 949
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASR---KIGEIEKEIEQLEQEEEKLkerlEELEEDLSSLEQE 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 950 QRDARQQAFALAEVVERRAHFSYSDSAEMLSGNSDLN----EKLRQRLEQAEAERTRAREALRSHAAQLSQYSQVLASLK 1025
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARLShsriPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1026 SSYDTKKELLNDLQRELQDIGVRADSGaeeraRQRRDELHAQLSNNRSRRNQLEKALTFCEAEMENLTRKLRKLERDYHE 1105
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENL-----NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907
|
....*....
gi 486184184 1106 MREQVVTAK 1114
Cdd:TIGR02169 908 LEAQIEKKR 916
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
292-536 |
8.25e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 8.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 292 RRELYTSRKQLAAEQYKHVDMARELGEHNGAEGSLEADYQAASDHLNLVQTAL-RQQEKIERYEADLEELQIRLEEQNEV 370
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELtELEAEIEELEERLEEAEEELAEAEAE 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 371 VAEAAEMQDENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYNQAISALARAKELCH--LPDLTP--ESAAEWLDT 446
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEeqIEELSEdiESLAAEIEE 863
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 447 FQAKEQEATEKLLSL-EQKMSVAQTAHSQFEQAYQLVAAINGPLARSEAWDVARELLRDGVNQRHLAEQVqpLRMRLSEL 525
Cdd:TIGR02168 864 LEELIEELESELEALlNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG--LEVRIDNL 941
|
250
....*....|.
gi 486184184 526 EQRLREQQEAE 536
Cdd:TIGR02168 942 QERLSEEYSLT 952
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
8-428 |
2.19e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 8 RSLTLINWNGFFAR-TFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLL--------HFRNTTEA----GATSGSRD 74
Cdd:COG4913 4 QRLQLINWGTFDGVhTIDFDGRGTLLTGDNGSGKSTLLDAIQTLLVPAKRPRfnkaandaGKSDRTLLsyvrGKYGSERD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 75 KGLHGK--LKAGVCYS---MLDTINSRHQRVVVGVRLQQVAGRDRKVDIKP-FAIQGLPMSVqptqlvtETLNERqARVL 148
Cdd:COG4913 84 EAGTRPvyLRPGDTWSaiaATFANDGSGQTVTLAQVFWLKGDASSLGDVKRfFVIADGPLDL-------EDFEEF-AHGF 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 149 SLAELKDKLDEMegvQFKQFNSITDYhslmfdlgiiARRLRSA--SDRSKFYRLieasLYGGIS----SAITRSLRDYLL 222
Cdd:COG4913 156 DIRALKARLKKQ---GVEFFDSFSAY----------LARLRRRlgIGSEKALRL----LHKTQSfkpiGDLDDFVREYML 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 223 PEnsgvRKAFQDMEAALrENRLTL----EAIRVTQSDRDLFKHLISEATDYVAADymrhanERRVHLDQALAfRRELYTS 298
Cdd:COG4913 219 EE----PDTFEAADALV-EHFDDLerahEALEDAREQIELLEPIRELAERYAAAR------ERLAELEYLRA-ALRLWFA 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 299 RKQLAAEQYKHVDMARELGEHNGAEGSLEADYQAASDHLNLVQTALRQQ--EKIERYEADLEELQIRLEEQNEVVAEAAE 376
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggDRLEQLEREIERLERELEERERRRARLEA 366
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 486184184 377 MQDENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQ-YNQAISALARAKE 428
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEaLAEAEAALRDLRR 419
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
339-601 |
2.40e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 339 LVQTALRQQEKIERYEADLEELQIRLEEQNEVVAEAAEmqdenearaeaaelEVDELKSQLADYQQALDVQQTRAIQYNQ 418
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKK--------------EEKALLKQLAALERRIAALARRIRALEQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 419 AISALARAkelchlpdltpesaaewLDTFQAKEQEATEKLLSLEQKMSvAQTAHSQFEQAYQLVAAIngpLARSEAWDVA 498
Cdd:COG4942 77 ELAALEAE-----------------LAELEKEIAELRAELEAQKEELA-ELLRALYRLGRQPPLALL---LSPEDFLDAV 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 499 RELLRDGVNQRHLAEQVQPLRMRLSELEQRLREQQEAERLLAEFCKRQGKnfDIDELEALHQELEARIASLSESVSSASE 578
Cdd:COG4942 136 RRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE--ERAALEALKAERQKLLARLEKELAELAA 213
|
250 260
....*....|....*....|...
gi 486184184 579 QRMALRQEQEQLQSRIQHLMRRA 601
Cdd:COG4942 214 ELAELQQEAEELEALIARLEAEA 236
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
835-1115 |
2.47e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 835 EAEIRRLNGRRVELERALATHENDNQQQRLQFEQAKEGVSALNRLLPRLNLLADETLADRVDEIQ---ERLDEAQEAA-R 910
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEaeiASLERSIAEKeR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 911 FVQQYGNQLAKLEPVVSVLQSDPEQFEQLKEDyawsQQMQRDARQqafalAEVVERRAHFsysdsaemlsgnsdlnEKLR 990
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEE----ERKRRDKLT-----EEYAELKEEL----------------EDLR 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 991 QRLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDTKKELLNDLQRELQDIgvRAD-SGAEERARQ---RRDELHA 1066
Cdd:TIGR02169 371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL--NAAiAGIEAKINEleeEKEDKAL 448
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 486184184 1067 QLSNNRSRRNQLEKALTFCEAEMENLTRKLRKLERDYHEMREQVVTAKA 1115
Cdd:TIGR02169 449 EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
892-1185 |
2.86e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 2.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 892 ADRVDEIQERLD--EAQEAARFVQQYGNQLAKLEPVVSVLQsdpEQFEQLKEDYAWSQQMQRDARQQAFALAEVVERR-- 967
Cdd:COG1196 212 AERYRELKEELKelEAELLLLKLRELEAELEELEAELEELE---AELEELEAELAELEAELEELRLELEELELELEEAqa 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 968 AHFSYSDSAEMLSGNSDLNEKLRQ----RLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDTKKELLNDLQRELQ 1043
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRReleeRLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1044 DIgVRADSGAEERARQRRDELHAQLSNNRSRRNQLEKALTFCEAEMENLTRKLRKLERDYHEMREQVVTAKAgwcavmrm 1123
Cdd:COG1196 369 EA-EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE-------- 439
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 486184184 1124 vkdngVERRLHRRELAYLSADELRSMSDKALGALRLAIADNEHLRDVLRLSEDPKRPERKIQ 1185
Cdd:COG1196 440 -----EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
835-1107 |
1.61e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 835 EAEIRRLNGRRVELERALATHENDNQQQRLQFEQAKEGVSALNRLLPRLNLlADETLADRVDEIQERLDEAQEAA----R 910
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL-EVSELEEEIEELQKELYALANEIsrleQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 911 FVQQYGNQLAKLEPVVSVLQSDPEQFEQLKEDYA-----WSQQMQRDARQQAFALAEVVERRAhfsysDSAEMLSGNSDL 985
Cdd:TIGR02168 303 QKQILRERLANLERQLEELEAQLEELESKLDELAeelaeLEEKLEELKEELESLEAELEELEA-----ELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 986 NEKLrqrlEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDTKKELLNDLQRELQDIGVRADSGAEERARQRRDELH 1065
Cdd:TIGR02168 378 EEQL----ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ 453
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 486184184 1066 AQLsnnRSRRNQLEKAltfcEAEMENLTRKLRKLERDYHEMR 1107
Cdd:TIGR02168 454 EEL---ERLEEALEEL----REELEEAEQALDAAERELAQLQ 488
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
781-1110 |
1.71e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 781 AARENRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRFIGSHLSVAFEDDPEAEIRRLNGRRVELERALATH---EN 857
Cdd:COG4717 84 EEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELrelEE 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 858 DNQQQRLQFEQAKEGVSALNRLLPRLNLLADETLADRVDEIQERLDEAQEAARFVQQYGNQLAKLEPVVSVLQSDPEQFE 937
Cdd:COG4717 164 ELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 938 QLKE-----------------------------------------DYAWSQQMQRDARQQAFALAEVVERRA-------- 968
Cdd:COG4717 244 RLKEarlllliaaallallglggsllsliltiagvlflvlgllalLFLLLAREKASLGKEAEELQALPALEEleeeelee 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 969 -----HFSYSDSAEMLSGNSDLNEKLRQRLEQAEAERTRAR-EALRSHAAQLSQYSQV--------LASLKSSYDTKKEL 1034
Cdd:COG4717 324 llaalGLPPDLSPEELLELLDRIEELQELLREAEELEEELQlEELEQEIAALLAEAGVedeeelraALEQAEEYQELKEE 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1035 LNDLQRELQDIG----VRADSGAEERARQRRDELHAQLSNNRSRRNQLEKALTFCEAEMENL--TRKLRKLERDYHEMRE 1108
Cdd:COG4717 404 LEELEEQLEELLgeleELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLeeDGELAELLQELEELKA 483
|
..
gi 486184184 1109 QV 1110
Cdd:COG4717 484 EL 485
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
214-680 |
1.77e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 214 TRSLRDYLLPENSGVRKAFQDMEAALRENRltlEAIRVTQSDRDLFKHLISEATDYV-----AADYMRHANERRVHLDQA 288
Cdd:PRK02224 235 TRDEADEVLEEHEERREELETLEAEIEDLR---ETIAETEREREELAEEVRDLRERLeeleeERDDLLAEAGLDDADAEA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 289 LAFRRELYTSRKQLAAEQYKHVDMAreLGEHNG-AEGSLE--ADYQAASDHL-----NLVQTALRQQEKIERYEADLEEL 360
Cdd:PRK02224 312 VEARREELEDRDEELRDRLEECRVA--AQAHNEeAESLREdaDDLEERAEELreeaaELESELEEAREAVEDRREEIEEL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 361 QIRLEEQNEVVAEAAEMQDENEARAEAAELEVDELKSQLADYQQALDVQQTRaIQYNQAISALARAKElCHLPdLTPESA 440
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER-VEEAEALLEAGKCPE-CGQP-VEGSPH 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 441 AEWLDTFQAKEQEATEKLLSLEQKMSVAQTAHSQFEQAYQLVAAINGPLARSEAWDVARELLRDGVNQRhlAEQVQPLRM 520
Cdd:PRK02224 467 VETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEK--RERAEELRE 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 521 RLSELEQRLREQQEA---ERLLAEFCKRQGKNFDiDELEALHQELEA--RIASLSESVSSASEQRMALRQEQEQLQS--- 592
Cdd:PRK02224 545 RAAELEAEAEEKREAaaeAEEEAEEAREEVAELN-SKLAELKERIESleRIRTLLAAIADAEDEIERLREKREALAElnd 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 593 -RIQHL--MRRAPVWLAAQNSLNQLSEQCGEEftssQEVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSqpggA 669
Cdd:PRK02224 624 eRRERLaeKRERKRELEAEFDEARIEEAREDK----ERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE----E 695
|
490
....*....|.
gi 486184184 670 EDQRLNALAER 680
Cdd:PRK02224 696 LRERREALENR 706
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
887-1115 |
3.04e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 887 ADETLADRVDEIQERLDEAQEA-ARFVQQYGnqlakLEPVVSVLQSDPEQFEQLKEDYAWSQQMQRDARQQAFALAEVVE 965
Cdd:COG3206 176 ALEFLEEQLPELRKELEEAEAAlEEFRQKNG-----LVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLG 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 966 rrahfSYSDSAEMLSGNSDLNEkLRQRLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSydtkkellndLQRELQDI 1045
Cdd:COG3206 251 -----SGPDALPELLQSPVIQQ-LRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ----------LQQEAQRI 314
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1046 GVRADSGAEErARQRRDELHAQLSNNRSRRNQLEKAltfcEAEMENLTRKLRKLERDYHEMREQVVTAKA 1115
Cdd:COG3206 315 LASLEAELEA-LQAREASLQAQLAQLEARLAELPEL----EAELRRLEREVEVARELYESLLQRLEEARL 379
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
894-1115 |
4.37e-04 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 45.18 E-value: 4.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 894 RVDEIQERLDEAQEAARFVQQ----YGNQLAKLEPVVSVLQSDPeQFEQLKEDYAWSQQMQRDARQQAFALAEVVERRA- 968
Cdd:PRK10246 251 RLDELQQEASRRQQALQQALAaeekAQPQLAALSLAQPARQLRP-HWERIQEQSAALAHTRQQIEEVNTRLQSTMALRAr 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 969 --HFSYSDSAEMLSGNSDLNEKL----RQRLEQAEAERTRAREA-LRSHAAQLSQYSQVLASLKSSYDTKKELLNDLQRE 1041
Cdd:PRK10246 330 irHHAAKQSAELQAQQQSLNTWLaehdRFRQWNNELAGWRAQFSqQTSDREQLRQWQQQLTHAEQKLNALPAITLTLTAD 409
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 486184184 1042 lqDIGVRADSGAEERA-RQRRDELHAQLSNNRSRRNQLEKALTFCEAEMENLTRKLRKLERDYHEMREQVVTAKA 1115
Cdd:PRK10246 410 --EVAAALAQHAEQRPlRQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKT 482
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
889-1115 |
8.13e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 8.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 889 ETLADRVDEIQERL-----DEAQEAARFVQQYGNQLAKLEPVVSVLQSDPEQFEQLKEDYAWSQQMQRDARQQafaLAEV 963
Cdd:PRK03918 499 KELAEQLKELEEKLkkynlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEE---LAEL 575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 964 VERRAHFSYSDSAEMLSGNSDLNEKLRQ--RLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDTKKELLNDLQRE 1041
Cdd:PRK03918 576 LKELEELGFESVEELEERLKELEPFYNEylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1042 LQDIGVRADSGAEERARQRRDELHAQLSNNRSRRNQLEKALTFCEAEMENLTRKLRKLER------DYHEMREQVVTAKA 1115
Cdd:PRK03918 656 YSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKlekaleRVEELREKVKKYKA 735
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
439-705 |
8.23e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 8.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 439 SAAEWLDTFQAKEQEATEKLLSLEQKMSVAQTAHSQFEQayqlvaaingplaRSEAWDVARELLRDGVNqrhlaeqVQPL 518
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQE-------------RREALQRLAEYSWDEID-------VASA 666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 519 RMRLSELEQRLREQQEAERLLAEFcKRQgknfdIDELEALHQELEARIASLSESVSSASEQRMALRQEQEQLQSRIQHLM 598
Cdd:COG4913 667 EREIAELEAELERLDASSDDLAAL-EEQ-----LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAE 740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 599 RRAPVWLAAqnslnqlseqcgeeftssqEVTEYLQQLLEREREAIVeRDEVGARKNAVDEEIERLSqpggaedQRLNALA 678
Cdd:COG4913 741 DLARLELRA-------------------LLEERFAAALGDAVEREL-RENLEERIDALRARLNRAE-------EELERAM 793
|
250 260
....*....|....*....|....*...
gi 486184184 679 ERFGGVLLSEIYD-DVSLEDAPYFSALY 705
Cdd:COG4913 794 RAFNREWPAETADlDADLESLPEYLALL 821
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
986-1115 |
8.34e-04 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 43.50 E-value: 8.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 986 NEKLRQRLEQAEAERTRAREALRSHAAQLSQYSQvLASLKSSYDTKKELLNDLQRELQdigvRADSGAEERA--RQRRDE 1063
Cdd:COG1566 78 PTDLQAALAQAEAQLAAAEAQLARLEAELGAEAE-IAAAEAQLAAAQAQLDLAQRELE----RYQALYKKGAvsQQELDE 152
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 486184184 1064 LHAQLSNNRSRRNQLEKALTFCEAEMENLTRkLRKLERDYHEMREQVVTAKA 1115
Cdd:COG1566 153 ARAALDAAQAQLEAAQAQLAQAQAGLREEEE-LAAAQAQVAQAEAALAQAEL 203
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
986-1232 |
1.04e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 986 NEKLRQRLEQAEAERTRAREALRSHAAQLSQYSQVlaslkssydtKKELLNDLQRELQDIgvradsgAEERARQ----RR 1061
Cdd:pfam17380 391 NERVRQELEAARKVKILEEERQRKIQQQKVEMEQI----------RAEQEEARQREVRRL-------EEERAREmervRL 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1062 DELHAQLSNNRSRRNQLEkaltfceaemenltRKLRKLERDYHEMREQVVTAKAgwcavmRMVkdngVERRLHRRELAYL 1141
Cdd:pfam17380 454 EEQERQQQVERLRQQEEE--------------RKRKKLELEKEKRDRKRAEEQR------RKI----LEKELEERKQAMI 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1142 SADELRSMSDKALGALRLAIADNEHLRDvlrlSEDPKRPERKIQffvavyqhLRERIRQDIIRTDDPVEAIEQMEIELSR 1221
Cdd:pfam17380 510 EEERKRKLLEKEMEERQKAIYEEERRRE----AEEERRKQQEME--------ERRRIQEQMRKATEERSRLEAMEREREM 577
|
250
....*....|.
gi 486184184 1222 LTEELTSREQK 1232
Cdd:pfam17380 578 MRQIVESEKAR 588
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
897-1295 |
1.19e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 897 EIQERLDEAQEAARFVQQ-YGNQLAKLEPVVSVLQSDPEQFEQ--------LKEDYAWSQQMQRDARQQAFALAEVVERR 967
Cdd:pfam05483 212 EMHFKLKEDHEKIQHLEEeYKKEINDKEKQVSLLLIQITEKENkmkdltflLEESRDKANQLEEKTKLQDENLKELIEKK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 968 AHFSYS------DSAEMLSGNSDLNEKLR-------QRLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDTKKEL 1034
Cdd:pfam05483 292 DHLTKEledikmSLQRSMSTQKALEEDLQiatkticQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQR 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1035 LNDLQRELQDIGV---RADSGAEERARQRR------DELHAQLSNNRS---RRNQLEKALTFCEAEMENLTRKLRKLERD 1102
Cdd:pfam05483 372 LEKNEDQLKIITMelqKKSSELEEMTKFKNnkevelEELKKILAEDEKlldEKKQFEKIAEELKGKEQELIFLLQAREKE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1103 YHEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSAD-ELRSMSDKAL--GALRLAIADNEHLRDVLRLSEDPKR 1179
Cdd:pfam05483 452 IHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHcDKLLLENKELtqEASDMTLELKKHQEDIINCKKQEER 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1180 PERKIQFFVAVYQHLR---ERIRQDIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIR 1256
Cdd:pfam05483 532 MLKQIENLEEKEMNLRdelESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIE 611
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 486184184 1257 MLNQGLQSV-SFGQVNSVRLNVNVRETHATLLDVLSEQQE 1295
Cdd:pfam05483 612 ELHQENKALkKKGSAENKQLNAYEIKVNKLELELASAKQK 651
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
781-1058 |
2.34e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 781 AARENRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRFIGSH---LSVAfeddpEAEIRRLNGRRVELERALATHEN 857
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALerrIAAL-----ARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 858 DNQQQRLQFEQAKegvsalnrllprlnlladETLADRVDEIQERLDEAQEAARFVQQYGNQLAK-LEPVVSVLQSDPEQF 936
Cdd:COG4942 91 EIAELRAELEAQK------------------EELAELLRALYRLGRQPPLALLLSPEDFLDAVRrLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 937 EQLKEDYAWSQQMQRDARQQAFALAEVVERrahfsysdsaemlsgnsdlNEKLRQRLEQAEAERtraREALRSHAAQLSQ 1016
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAE-------------------LEEERAALEALKAER---QKLLARLEKELAE 210
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 486184184 1017 YSQVLASLKSSYDTKKELLNDLQRELQDIGVRADSGAEERAR 1058
Cdd:COG4942 211 LAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
987-1313 |
2.70e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.81 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 987 EKLRQRLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDTKKELLNDLQRELQDIgvradSGAEERARQRRDELHA 1066
Cdd:COG4372 48 EQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESL-----QEEAEELQEELEELQK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1067 QLSNNRSRRNQLEKALTFCEAEMENLTRKLRKLERDYHEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSADEL 1146
Cdd:COG4372 123 ERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEEL 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1147 RSMSDKALGALRLAIADNEHLRDVLRLSEDPKRPERKIQFFVAVYQHLRERIRQDIIRTDDpVEAIEQMEIELSRLTEEL 1226
Cdd:COG4372 203 AEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEEL-ELAILVEKDTEEEELEIA 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1227 TSREQKLAISSRSVANIIRKTIQREQNRIRMLNQGLQSVSFGQVNSVRLNVNVRETHATLLDVLSEQQEQHQDLFNSNRL 1306
Cdd:COG4372 282 ALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLSK 361
|
....*..
gi 486184184 1307 TFSEALA 1313
Cdd:COG4372 362 GAEAGVA 368
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1014-1296 |
4.74e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 4.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1014 LSQYSQVLASLKSSYDTKKEL-----------LNDLQRELQDIGVRADSGAEERAR--QRRDELHAQLSNNrsrRNQLEK 1080
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNELhekqkfylrqsVIDLQTKLQEMQMERDAMADIRRResQSQEDLRNQLQNT---VHELEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1081 ALTFCEAEMENLT---RKLRKL----ERDYHEMREQVVTAKAgwcAVMRMVKDNGVERRLHRRELAYLSADELRSMsDKA 1153
Cdd:pfam15921 157 AKCLKEDMLEDSNtqiEQLRKMmlshEGVLQEIRSILVDFEE---ASGKKIYEHDSMSTMHFRSLGSAISKILREL-DTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1154 LGALRLAIADNEHLRDVLRlSEDPKRPERKIQffvavyQHlRERIRQdiirtddpveAIEQMEIELSRLTEEltsreqkl 1233
Cdd:pfam15921 233 ISYLKGRIFPVEDQLEALK-SESQNKIELLLQ------QH-QDRIEQ----------LISEHEVEITGLTEK-------- 286
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 486184184 1234 AISSRSVANIIRKTIQREQNRIRMLNQG-LQSVSFGQVNSVRLNVNVRETHATLLDVLSEQQEQ 1296
Cdd:pfam15921 287 ASSARSQANSIQSQLEIIQEQARNQNSMyMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQ 350
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1055-1260 |
5.76e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 5.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1055 ERARQRRDELHAQLSNNRSRRNQLEKALTFCEAEMENLTRKLRKLERDYHEMREQVVTAKAgwcavmrmvKDNGVERRLH 1134
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK---------EIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1135 RRELAYlsADELRSMSdkalgalRLAIADNEhlrDVLRLSEDPKRPERKIQFFVAVYQHLRERI---RQDIIRTDDPVEA 1211
Cdd:COG4942 101 AQKEEL--AELLRALY-------RLGRQPPL---ALLLSPEDFLDAVRRLQYLKYLAPARREQAeelRADLAELAALRAE 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 486184184 1212 IEQMEIELSRLTEELTSREQKLA---ISSRSVANIIRKTIQREQNRIRMLNQ 1260
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEalkAERQKLLARLEKELAELAAELAELQQ 220
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
889-1098 |
6.62e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.10 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 889 ETLADRVDEIQERLDE---AQEAARFVQQYGNQLAKLEPVVSVLQSDPEQFEQLKEDYAwsqQMQRDARQQAFALAEVVE 965
Cdd:COG5185 285 NNLIKQFENTKEKIAEytkSIDIKKATESLEEQLAAAEAEQELEESKRETETGIQNLTA---EIEQGQESLTENLEAIKE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 966 RRAHFSY----SDSAEMLSGNSDLNEKLRQRLEQAEAERTRA--------REALRSHAAQLSQYSQVLASLKSSYD---- 1029
Cdd:COG5185 362 EIENIVGevelSKSSEELDSFKDTIESTKESLDEIPQNQRGYaqeilatlEDTLKAADRQIEELQRQIEQATSSNEevsk 441
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 486184184 1030 TKKELLNDLQRELQDIGVRADSGAEERARQRRDELHAQLSNNRSRRNQLEKALTFCEAEMENLTRKLRK 1098
Cdd:COG5185 442 LLNELISELNKVMREADEESQSRLEEAYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLER 510
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
10-51 |
7.26e-03 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 39.40 E-value: 7.26e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 486184184 10 LTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTAL 51
Cdd:pfam13476 1 LTIENFRSFRDQTIDFSKGLTLITGPNGSGKTTILDAIKLAL 42
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
986-1115 |
7.57e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 986 NEKLRQ--RLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDTKKELLNDLQRELQDIgvradSGAEERARQRRDE 1063
Cdd:COG1579 3 PEDLRAllDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRL-----ELEIEEVEARIKK 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 486184184 1064 LHAQLSNNRSrrnqlEKALTFCEAEMENLTRKLRKLERDYHEMREQVVTAKA 1115
Cdd:COG1579 78 YEEQLGNVRN-----NKEYEALQKEIESLKRRISDLEDEILELMERIEELEE 124
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
513-680 |
7.61e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 7.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 513 EQVQPLRMRLSELEQRLREQQEAERLLAEfckrqgknfDIDELEALHQELEARIaslsesvssaseQRMALRQEQEQLQS 592
Cdd:COG4717 88 EEYAELQEELEELEEELEELEAELEELRE---------ELEKLEKLLQLLPLYQ------------ELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 593 RIQHLMRRAPVWLAAQNSLNQLSEQCGEEFTSSQEVTEYL-QQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGAED 671
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELE 226
|
....*....
gi 486184184 672 QRLNALAER 680
Cdd:COG4717 227 EELEQLENE 235
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
6-51 |
7.97e-03 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 39.22 E-value: 7.97e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 486184184 6 KFRSLTLINWNGFF-ARTFDLDELVTTLSGGNGAGKSTTMAAFVTAL 51
Cdd:COG0419 1 KLLRLRLENFRSYRdTETIDFDDGLNLIVGPNGAGKSTILEAIRYAL 47
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
987-1240 |
8.25e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 8.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 987 EKLRQRLEQAEAERTRARE--ALRSHAAQLSQYsqVLASLKSSYDTKKEL----LNDLQRELQDIGVRADSGAEE--RAR 1058
Cdd:TIGR02169 194 DEKRQQLERLRREREKAERyqALLKEKREYEGY--ELLKEKEALERQKEAierqLASLEEELEKLTEEISELEKRleEIE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1059 QRRDELHAQ---LSNNRSRR------------NQLEKALTFCEAEMENLTRKLRKLERDYH-------EMREQVVTAKAG 1116
Cdd:TIGR02169 272 QLLEELNKKikdLGEEEQLRvkekigeleaeiASLERSIAEKERELEDAEERLAKLEAEIDkllaeieELEREIEEERKR 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486184184 1117 WCAVMRMVKDNGVERRLHRRELAYLSAD--ELRSMSDKALGALRLAIAD-NEHLRDVLRLSEDPKRPERKIQFFVAVYQH 1193
Cdd:TIGR02169 352 RDKLTEEYAELKEELEDLRAELEEVDKEfaETRDELKDYREKLEKLKREiNELKRELDRLQEELQRLSEELADLNAAIAG 431
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 486184184 1194 LRERIRQDIIRTDDPVEAIEQ----------------------------MEIELSRLTEELTSREQKLAISSRSV 1240
Cdd:TIGR02169 432 IEAKINELEEEKEDKALEIKKqewkleqlaadlskyeqelydlkeeydrVEKELSKLQRELAEAEAQARASEERV 506
|
|
| |
