NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|486207028|ref|WP_001553111|]
View 

MULTISPECIES: conjugative transfer protein MobI(A/C) [Gammaproteobacteria]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MobI pfam19456
MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), ...
 50-165 9.44e-31

MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), integrative conjugative elements of the SXT/R391 family and numerous genomic islands mobilized by IncC plasmids. Alongside a relaxase of the MOBH1 family, this protein is essential to conjugative transfer of these elements and is likely a relaxosome component involved in recognition of the origin of transfer.


:

Pssm-ID: 466093  Cd Length: 116  Bit Score: 108.20  E-value: 9.44e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486207028   50 LAVEAQQEADMYWSAHKSAREEASEDEQGRVGTRVRILGVSLVAEWYRNRFVEQvPGQKKRVLSTHIKKGRGYAYSMSHF 129
Cdd:pfam19456   1 LYAEAKALADRFWEAVKAEREKETGSERGRLGLRVRRRGNSLTIEWYRNRFYGK-KGGGKRRISKYIAKGKGKRYSKSAF 79

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 486207028  130 KK-EPAWAQELIQEVETRYAALRQRATAIAKIRRALN 165
Cdd:pfam19456  80 SKfAKDWELELVEETEEELAEIRRQAAHLSKARRSLR 116
 
Name Accession Description Interval E-value
MobI pfam19456
MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), ...
 50-165 9.44e-31

MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), integrative conjugative elements of the SXT/R391 family and numerous genomic islands mobilized by IncC plasmids. Alongside a relaxase of the MOBH1 family, this protein is essential to conjugative transfer of these elements and is likely a relaxosome component involved in recognition of the origin of transfer.


Pssm-ID: 466093  Cd Length: 116  Bit Score: 108.20  E-value: 9.44e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486207028   50 LAVEAQQEADMYWSAHKSAREEASEDEQGRVGTRVRILGVSLVAEWYRNRFVEQvPGQKKRVLSTHIKKGRGYAYSMSHF 129
Cdd:pfam19456   1 LYAEAKALADRFWEAVKAEREKETGSERGRLGLRVRRRGNSLTIEWYRNRFYGK-KGGGKRRISKYIAKGKGKRYSKSAF 79

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 486207028  130 KK-EPAWAQELIQEVETRYAALRQRATAIAKIRRALN 165
Cdd:pfam19456  80 SKfAKDWELELVEETEEELAEIRRQAAHLSKARRSLR 116
 
Name Accession Description Interval E-value
MobI pfam19456
MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), ...
 50-165 9.44e-31

MobI protein; MobI is conserved across conjugative plasmids of incompatibility group C (IncC), integrative conjugative elements of the SXT/R391 family and numerous genomic islands mobilized by IncC plasmids. Alongside a relaxase of the MOBH1 family, this protein is essential to conjugative transfer of these elements and is likely a relaxosome component involved in recognition of the origin of transfer.


Pssm-ID: 466093  Cd Length: 116  Bit Score: 108.20  E-value: 9.44e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486207028   50 LAVEAQQEADMYWSAHKSAREEASEDEQGRVGTRVRILGVSLVAEWYRNRFVEQvPGQKKRVLSTHIKKGRGYAYSMSHF 129
Cdd:pfam19456   1 LYAEAKALADRFWEAVKAEREKETGSERGRLGLRVRRRGNSLTIEWYRNRFYGK-KGGGKRRISKYIAKGKGKRYSKSAF 79

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 486207028  130 KK-EPAWAQELIQEVETRYAALRQRATAIAKIRRALN 165
Cdd:pfam19456  80 SKfAKDWELELVEETEEELAEIRRQAAHLSKARRSLR 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH