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Conserved domains on  [gi|486282852|ref|WP_001571240|]
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MULTISPECIES: HTH-type transcriptional regulator RutR [Enterobacteriaceae]

Protein Classification

HTH-type transcriptional regulator RutR( domain architecture ID 11487563)

HTH-type transcriptional regulator RutR is a master transcription regulator which represses the degradation of pyrimidines (rutABCDEFG) and purines (gcl operon) for maintenance of metabolic balance between pyrimidines and purines; also regulates the synthesis of pyrimidine nucleotides and arginine from glutamine (carAB) and the supply of glutamate (gadABWX)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15008 PRK15008
HTH-type transcriptional regulator RutR; Provisional
 1-212 9.02e-156

HTH-type transcriptional regulator RutR; Provisional


:

Pssm-ID: 184970 [Multi-domain]  Cd Length: 212  Bit Score: 429.73  E-value: 9.02e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852   1 MTQGAVKITGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAP 80
Cdd:PRK15008   1 MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852  81 LKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ 160
Cdd:PRK15008  81 LKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 486282852 161 HLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR 212
Cdd:PRK15008 161 HLIFMIWASTQHYADFAPQVEAVTGATLRDEAFFNQTVENVQRIIIEGIRPR 212
 
Name Accession Description Interval E-value
PRK15008 PRK15008
HTH-type transcriptional regulator RutR; Provisional
 1-212 9.02e-156

HTH-type transcriptional regulator RutR; Provisional


Pssm-ID: 184970 [Multi-domain]  Cd Length: 212  Bit Score: 429.73  E-value: 9.02e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852   1 MTQGAVKITGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAP 80
Cdd:PRK15008   1 MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852  81 LKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ 160
Cdd:PRK15008  81 LKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 486282852 161 HLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR 212
Cdd:PRK15008 161 HLIFMIWASTQHYADFAPQVEAVTGATLRDEAFFNQTVENVQRIIIEGIRPR 212
RutR TIGR03613
pyrimidine utilization regulatory protein R; This protein is observed in operons extremely ...
 11-212 3.49e-131

pyrimidine utilization regulatory protein R; This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the TetR family of transcriptional regulators defined by the N-teminal model pfam00440 and the C-terminal model pfam08362 (YcdC-like protein, C-terminal region).


Pssm-ID: 274678  Cd Length: 202  Bit Score: 366.91  E-value: 3.49e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852   11 KRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAP 90
Cdd:TIGR03613   1 KRSRAVEAKRKAILSAALDTFSRFGFHGTSLEQIAELAGVSKTNLLYYFPSKDALYLAVLRQILDIWLSPLKAFTEDFAP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852   91 LAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWAST 170
Cdd:TIGR03613  81 LAAIKAYIRAKLEMSRDHPQASRLFCMEMLAGAPLLMDELTGPLKALIDAKSAVIAGWVKSGKLAPIDPQHLIFMIWAST 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 486282852  171 QHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR 212
Cdd:TIGR03613 161 QHYADFAPQVEAVTGKTLRDEVFFNETVANVQRIVLEGILPR 202
TetR_C_3 pfam08362
YcdC-like protein, C-terminal region; This family comprises proteins that belong to the TetR ...
 70-212 9.94e-80

YcdC-like protein, C-terminal region; This family comprises proteins that belong to the TetR family of transcriptional regulators. They bear particular similarity to YcdC, a putative HTH-containing protein. This family features the C-terminal region of these sequences, which does not include the helix-turn-helix.


Pssm-ID: 429946  Cd Length: 143  Bit Score: 234.51  E-value: 9.94e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852   70 LRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWV 149
Cdd:pfam08362   1 LESILEPWLAPLRPFEVDDDPAEALAAYIRAKLEISRDRPHASRVFANEIMHGAPHLPPELSERLKAQADRKAAVIQRWI 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 486282852  150 KSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR 212
Cdd:pfam08362  81 DQGRIAPVDPYHLIFTIWASTQHYADFDWQVEAVTGKTLLDDSDYDEAAETVTRLVLKGCGPR 143
AcrR COG1309
DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];
13-171 3.47e-24

DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];


Pssm-ID: 440920 [Multi-domain]  Cd Length: 156  Bit Score: 93.42  E-value: 3.47e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852  13 SRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLA 92
Cdd:COG1309    1 RRRREATRERILDAALELFAEKGYEGTSVRDIAARAGVSKGTLYRHFGSKEELLLAVLERLLEELLAALEEALAAEDPRE 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 486282852  93 AIKEYIRLKLEVSRDYPQASRLFcMEMLAGAPLLMDELTGDLKALIDEKSALIAgwvKSGKLAPIDPQHLIFMIWASTQ 171
Cdd:COG1309   81 RLRALLRAYLEFLAENPALARLL-LAEAAELPELRAALRALLRRLRALLAELLR---AGGLLADVDPDALARALLALLD 155
ScbR_bind_reg NF041196
ScbR family autoregulator-binding transcription factor;
14-90 2.40e-09

ScbR family autoregulator-binding transcription factor;


Pssm-ID: 469100 [Multi-domain]  Cd Length: 191  Bit Score: 54.52  E-value: 2.40e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 486282852  14 RAVsAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAP 90
Cdd:NF041196   3 RAI-RTRRAILEAAAEVFDERGYAAATISDILERAGVTKGALYFHFSSKEALARAVLEEQVARLREAVEPQRAGGGS 78
septum_RefZ NF037937
forespore capture DNA-binding protein RefZ; RefZ (regulator of FtsZ), a DNA-binding protein in ...
 20-119 3.29e-09

forespore capture DNA-binding protein RefZ; RefZ (regulator of FtsZ), a DNA-binding protein in the family of TetR/AcrR family transcriptional regulators, participates in septum placement and in chromosome capture during the asymmetrical cell division in endospore formation. The five nearly palindromic DNA motifs (RBMs) to which RefZ binds affect chromosomal localization, not transcription, so RefZ is not considered a transcription factor.


Pssm-ID: 468281 [Multi-domain]  Cd Length: 195  Bit Score: 54.46  E-value: 3.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852  20 KKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEAL-----------YIAVLRQILDIwlaplkafREDF 88
Cdd:NF037937   1 KEKILDAAISLFNTKGFDGTSVRDIAKKAKVNVALISYYFKGKQGLleylvtsffegYLEILEEGFEE--------LKNL 72

                         90       100       110
                 ....*....|....*....|....*....|.
gi 486282852  89 APLAAIKEYIRLKLEVSRDYPQASRLFCMEM 119
Cdd:NF037937  73 SAKECLKQLVRNILHYQQEHHQLTRFVHREL 103
 
Name Accession Description Interval E-value
PRK15008 PRK15008
HTH-type transcriptional regulator RutR; Provisional
 1-212 9.02e-156

HTH-type transcriptional regulator RutR; Provisional


Pssm-ID: 184970 [Multi-domain]  Cd Length: 212  Bit Score: 429.73  E-value: 9.02e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852   1 MTQGAVKITGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAP 80
Cdd:PRK15008   1 MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852  81 LKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ 160
Cdd:PRK15008  81 LKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 486282852 161 HLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR 212
Cdd:PRK15008 161 HLIFMIWASTQHYADFAPQVEAVTGATLRDEAFFNQTVENVQRIIIEGIRPR 212
RutR TIGR03613
pyrimidine utilization regulatory protein R; This protein is observed in operons extremely ...
 11-212 3.49e-131

pyrimidine utilization regulatory protein R; This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the TetR family of transcriptional regulators defined by the N-teminal model pfam00440 and the C-terminal model pfam08362 (YcdC-like protein, C-terminal region).


Pssm-ID: 274678  Cd Length: 202  Bit Score: 366.91  E-value: 3.49e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852   11 KRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAP 90
Cdd:TIGR03613   1 KRSRAVEAKRKAILSAALDTFSRFGFHGTSLEQIAELAGVSKTNLLYYFPSKDALYLAVLRQILDIWLSPLKAFTEDFAP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852   91 LAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWAST 170
Cdd:TIGR03613  81 LAAIKAYIRAKLEMSRDHPQASRLFCMEMLAGAPLLMDELTGPLKALIDAKSAVIAGWVKSGKLAPIDPQHLIFMIWAST 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 486282852  171 QHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR 212
Cdd:TIGR03613 161 QHYADFAPQVEAVTGKTLRDEVFFNETVANVQRIVLEGILPR 202
TetR_C_3 pfam08362
YcdC-like protein, C-terminal region; This family comprises proteins that belong to the TetR ...
 70-212 9.94e-80

YcdC-like protein, C-terminal region; This family comprises proteins that belong to the TetR family of transcriptional regulators. They bear particular similarity to YcdC, a putative HTH-containing protein. This family features the C-terminal region of these sequences, which does not include the helix-turn-helix.


Pssm-ID: 429946  Cd Length: 143  Bit Score: 234.51  E-value: 9.94e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852   70 LRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWV 149
Cdd:pfam08362   1 LESILEPWLAPLRPFEVDDDPAEALAAYIRAKLEISRDRPHASRVFANEIMHGAPHLPPELSERLKAQADRKAAVIQRWI 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 486282852  150 KSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR 212
Cdd:pfam08362  81 DQGRIAPVDPYHLIFTIWASTQHYADFDWQVEAVTGKTLLDDSDYDEAAETVTRLVLKGCGPR 143
AcrR COG1309
DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];
13-171 3.47e-24

DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];


Pssm-ID: 440920 [Multi-domain]  Cd Length: 156  Bit Score: 93.42  E-value: 3.47e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852  13 SRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLA 92
Cdd:COG1309    1 RRRREATRERILDAALELFAEKGYEGTSVRDIAARAGVSKGTLYRHFGSKEELLLAVLERLLEELLAALEEALAAEDPRE 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 486282852  93 AIKEYIRLKLEVSRDYPQASRLFcMEMLAGAPLLMDELTGDLKALIDEKSALIAgwvKSGKLAPIDPQHLIFMIWASTQ 171
Cdd:COG1309   81 RLRALLRAYLEFLAENPALARLL-LAEAAELPELRAALRALLRRLRALLAELLR---AGGLLADVDPDALARALLALLD 155
TetR_N pfam00440
Bacterial regulatory proteins, tetR family;
23-69 1.62e-11

Bacterial regulatory proteins, tetR family;


Pssm-ID: 425684 [Multi-domain]  Cd Length: 47  Bit Score: 57.03  E-value: 1.62e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 486282852   23 ILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAV 69
Cdd:pfam00440   1 ILDAARELFAERGYDATTVREIAKRAGVSKGALYRYFGSKEELLEAL 47
ScbR_bind_reg NF041196
ScbR family autoregulator-binding transcription factor;
14-90 2.40e-09

ScbR family autoregulator-binding transcription factor;


Pssm-ID: 469100 [Multi-domain]  Cd Length: 191  Bit Score: 54.52  E-value: 2.40e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 486282852  14 RAVsAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAP 90
Cdd:NF041196   3 RAI-RTRRAILEAAAEVFDERGYAAATISDILERAGVTKGALYFHFSSKEALARAVLEEQVARLREAVEPQRAGGGS 78
septum_RefZ NF037937
forespore capture DNA-binding protein RefZ; RefZ (regulator of FtsZ), a DNA-binding protein in ...
 20-119 3.29e-09

forespore capture DNA-binding protein RefZ; RefZ (regulator of FtsZ), a DNA-binding protein in the family of TetR/AcrR family transcriptional regulators, participates in septum placement and in chromosome capture during the asymmetrical cell division in endospore formation. The five nearly palindromic DNA motifs (RBMs) to which RefZ binds affect chromosomal localization, not transcription, so RefZ is not considered a transcription factor.


Pssm-ID: 468281 [Multi-domain]  Cd Length: 195  Bit Score: 54.46  E-value: 3.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852  20 KKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEAL-----------YIAVLRQILDIwlaplkafREDF 88
Cdd:NF037937   1 KEKILDAAISLFNTKGFDGTSVRDIAKKAKVNVALISYYFKGKQGLleylvtsffegYLEILEEGFEE--------LKNL 72

                         90       100       110
                 ....*....|....*....|....*....|.
gi 486282852  89 APLAAIKEYIRLKLEVSRDYPQASRLFCMEM 119
Cdd:NF037937  73 SAKECLKQLVRNILHYQQEHHQLTRFVHREL 103
PRK11552 PRK11552
putative DNA-binding transcriptional regulator; Provisional
 8-138 7.51e-09

putative DNA-binding transcriptional regulator; Provisional


Pssm-ID: 236928 [Multi-domain]  Cd Length: 225  Bit Score: 53.90  E-value: 7.51e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852   8 ITGKRSRAVSAKKKaILSAALDTFSQFGFHGTRlEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIwlaplkaFRED 87
Cdd:PRK11552   4 NPAMTTRGEQAKQQ-LIAAALAQFGEYGLHATT-RDIAAQAGQNIAAITYYFGSKEDLYLAVAQWIADF-------IGEQ 74

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 486282852  88 FAPLAaiKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALI 138
Cdd:PRK11552  75 FRPHA--EEAERLFAQPAPDRAAIRELILRACLNMIKLLTQDDTVNLSKFI 123
YbjK COG3226
DNA-binding transcriptional regulator YbjK [Transcription];
12-123 1.26e-08

DNA-binding transcriptional regulator YbjK [Transcription];


Pssm-ID: 442459 [Multi-domain]  Cd Length: 191  Bit Score: 52.63  E-value: 1.26e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852  12 RSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPL 91
Cdd:COG3226    2 RRRRGEERRERILEAALRVIARDGVRGVTHRAVAAEAGVPLGSTTYYFRTRDELLAAAFERLAEREAARLRALLAAADDL 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 486282852  92 AAIKEYI-RLKLEVSRDYPQASRLFcMEMLAGA 123
Cdd:COG3226   82 EDAAEALaDLLAELLPADRDRLLAR-YELYLEA 113
PRK00767 PRK00767
transcriptional regulator BetI; Validated
 20-75 2.88e-05

transcriptional regulator BetI; Validated


Pssm-ID: 179115 [Multi-domain]  Cd Length: 197  Bit Score: 43.29  E-value: 2.88e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 486282852  20 KKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILD 75
Cdd:PRK00767  11 RQQLIDATLRAIGEVGLLDATIAQIARRAGVSTGIISHYFGGKDGLLEATMRHLLR 66
PRK11640 PRK11640
putative transcriptional regulator; Provisional
 23-77 7.59e-04

putative transcriptional regulator; Provisional


Pssm-ID: 183252 [Multi-domain]  Cd Length: 191  Bit Score: 38.82  E-value: 7.59e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 486282852  23 ILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLR---QILDIW 77
Cdd:PRK11640   6 VLGEALKLLEQQGLANTTLEMLAERVDYPLDELQRFWPDREALLYDALRyhsQQIDTW 63
PRK09975 PRK09975
DNA-binding transcriptional regulator EnvR; Provisional
 11-98 1.13e-03

DNA-binding transcriptional regulator EnvR; Provisional


Pssm-ID: 182177 [Multi-domain]  Cd Length: 213  Bit Score: 38.57  E-value: 1.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486282852  11 KRSRAVSAK-KKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAV------LRQIL------DIW 77
Cdd:PRK09975   3 KKTKAEALKtRQELIETAIAQFALRGVSNTTLNDIADAANVTRGAIYWHFENKTQLFNEMwlqqppLRELIqehltaGLE 82

                         90       100
                 ....*....|....*....|.
gi 486282852  78 LAPLKAFREDFapLAAIkEYI 98
Cdd:PRK09975  83 HDPLQQLREKF--IAGL-QYI 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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