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Conserved domains on  [gi|486324084|ref|WP_001582764|]
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phage tail assembly protein T [Escherichia coli]

Protein Classification

phage tail assembly protein T( domain architecture ID 10533305)

phage tail assembly protein T is involved in the assembly of the initiator complex for tail polymerization

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_tail_T pfam06223
Minor tail protein T; Minor tail protein T is located at the distal end and is involved in the ...
 11-111 8.74e-57

Minor tail protein T; Minor tail protein T is located at the distal end and is involved in the assembly of the initiator complex for tail polymerization.


:

Pssm-ID: 283804  Cd Length: 100  Bit Score: 172.34  E-value: 8.74e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486324084   11 KLAREMGRPDWRAMLAGMSSTEYADWHRFYSTHYFHDVLLDMHFSGLTYTVLSLfFSDPEMHPLDFSLLNRREADEEPED 90
Cdd:pfam06223   1 KLAREFRRPDWRAMLAEMSSTELGEWADFFSTNSFSDALLDAEFSTLKYTVSGL-VTGPEMDADDFSLLTAPEADEEPTD 79

                          90       100
                  ....*....|....*....|.
gi 486324084   91 DVLMQKSAGLAGGVRFAPDGN 111
Cdd:pfam06223  80 DELMQKAAGITGGVRYGPDSE 100
 
Name Accession Description Interval E-value
Phage_tail_T pfam06223
Minor tail protein T; Minor tail protein T is located at the distal end and is involved in the ...
 11-111 8.74e-57

Minor tail protein T; Minor tail protein T is located at the distal end and is involved in the assembly of the initiator complex for tail polymerization.


Pssm-ID: 283804  Cd Length: 100  Bit Score: 172.34  E-value: 8.74e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486324084   11 KLAREMGRPDWRAMLAGMSSTEYADWHRFYSTHYFHDVLLDMHFSGLTYTVLSLfFSDPEMHPLDFSLLNRREADEEPED 90
Cdd:pfam06223   1 KLAREFRRPDWRAMLAEMSSTELGEWADFFSTNSFSDALLDAEFSTLKYTVSGL-VTGPEMDADDFSLLTAPEADEEPTD 79

                          90       100
                  ....*....|....*....|.
gi 486324084   91 DVLMQKSAGLAGGVRFAPDGN 111
Cdd:pfam06223  80 DELMQKAAGITGGVRYGPDSE 100
phage_lam_T TIGR01715
phage tail assembly protein T; This model represents a translation of the T gene in phage ...
 16-110 3.10e-45

phage tail assembly protein T; This model represents a translation of the T gene in phage lambda and related phage. A translational frameshift from the upstream gene G into the frame of T produces a minor protein gpG-T, essential in tail assembly but not found in the mature virion. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273771  Cd Length: 95  Bit Score: 142.70  E-value: 3.10e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486324084   16 MGRPDWRAMLAGMSSTEYADWHRFYSTHYFHDVLLDMHFSGLTYTVLSLFFSdPEMHPLDFSLLNRREADEEPEDDVLMQ 95
Cdd:TIGR01715   1 FRRPDWRAMLAEMSSTELGEWARFFRTNSFSDALLDAEFSTLKYAVSSLVTG-PEMDASDFSLLTEPQTERPDTDDMLMR 79

                          90
                  ....*....|....*
gi 486324084   96 KSAGLAGGVRFAPDG 110
Cdd:TIGR01715  80 KAAGISGGVRFGPDS 94
 
Name Accession Description Interval E-value
Phage_tail_T pfam06223
Minor tail protein T; Minor tail protein T is located at the distal end and is involved in the ...
 11-111 8.74e-57

Minor tail protein T; Minor tail protein T is located at the distal end and is involved in the assembly of the initiator complex for tail polymerization.


Pssm-ID: 283804  Cd Length: 100  Bit Score: 172.34  E-value: 8.74e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486324084   11 KLAREMGRPDWRAMLAGMSSTEYADWHRFYSTHYFHDVLLDMHFSGLTYTVLSLfFSDPEMHPLDFSLLNRREADEEPED 90
Cdd:pfam06223   1 KLAREFRRPDWRAMLAEMSSTELGEWADFFSTNSFSDALLDAEFSTLKYTVSGL-VTGPEMDADDFSLLTAPEADEEPTD 79

                          90       100
                  ....*....|....*....|.
gi 486324084   91 DVLMQKSAGLAGGVRFAPDGN 111
Cdd:pfam06223  80 DELMQKAAGITGGVRYGPDSE 100
phage_lam_T TIGR01715
phage tail assembly protein T; This model represents a translation of the T gene in phage ...
 16-110 3.10e-45

phage tail assembly protein T; This model represents a translation of the T gene in phage lambda and related phage. A translational frameshift from the upstream gene G into the frame of T produces a minor protein gpG-T, essential in tail assembly but not found in the mature virion. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273771  Cd Length: 95  Bit Score: 142.70  E-value: 3.10e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 486324084   16 MGRPDWRAMLAGMSSTEYADWHRFYSTHYFHDVLLDMHFSGLTYTVLSLFFSdPEMHPLDFSLLNRREADEEPEDDVLMQ 95
Cdd:TIGR01715   1 FRRPDWRAMLAEMSSTELGEWARFFRTNSFSDALLDAEFSTLKYAVSSLVTG-PEMDASDFSLLTEPQTERPDTDDMLMR 79

                          90
                  ....*....|....*
gi 486324084   96 KSAGLAGGVRFAPDG 110
Cdd:TIGR01715  80 KAAGISGGVRFGPDS 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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